Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

4595787 .. 4596646

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G064300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTTCCTCTCTGCTTCCAAACCCAACCCACTTCCTCAAACTCAAACCCCTCACGCTCACAACCAACCGCACCATAACCCACGTTTCCGTACGGTGTGGACCACGCGACAACCGTGGACCCTTGGTCAAGGGCCGGGTCCTCAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGACCGAATTGCCCACTCTCGCATCCAAGACCCTCTCGCGCCTAATAAAAGCCGACCTCGTCGCCGCCCTCAGAGAGCTTCTACGGCAGGAACAGTGCCACCTGGCTCTCCAGGTCTTCTCCACCTTCCGATCAGAATACCCACCCGACTTATCTGTTTACGCCGAGATGGCATTGGCGCTCGCGAGAAATGGGATGGCAGAGGATATGGACGGCTTGATTTGTGTCCTGGAGAAAGAAAGTGGGGTCCAGTGGGATAGTGACAAAGGATTGATAAGGTTGATCAGGGCCGTTGTTACTGCGGATAGGAGGGAATCAACGGTCAAGATTTATGAGATGTTGAAGAGGAATGGGTGGGGTTCTAGTGATTTTAAAGCGGACGAGTATATGGTTAGGGTTCTGAGTAAGGGGCTGAGGAGACTTGGGGAGGTTGGATTGGCTGATGAGGTTGATATGAAATTTGGTAGCCCCTATGAGGGTAATTTGGAGAAATTAACTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.98

Weight (kDa)

9.13

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	108, 238, 383
AciI	CCGC	4 cut(s)	70, 264, 500, 575
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	656
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	4 cut(s)	180, 181, 673, 674
AgsI	TTSAA	1 cut(s)	541
AhdI	GACNNNNNGTC	1 cut(s)	125
AjnI	CCWGG	3 cut(s)	300, 309, 426
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	4 cut(s)	133, 153, 183, 486
ApaI	GGGCCC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	656
AspLEI	GCGC	2 cut(s)	240, 379
AspS9I	GGNCC	8 cut(s)	101, 119, 133, 139, 183, 184, 445, 486
AsuC2I	CCSGG	1 cut(s)	137
AvaII	GGWCC	4 cut(s)	101, 119, 139, 445
BaeGI	GKGCMC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	307
BbvCI	CCTCAGC	2 cut(s)	143, 611
BccI	CCATC	3 cut(s)	164, 361, 388
BceAI	ACGGC	4 cut(s)	149, 299, 427, 473
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	3 cut(s)	302, 311, 428
BclI	TGATCA	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	368
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	4 cut(s)	137, 302, 311, 428
Bme18I	GGWCC	4 cut(s)	101, 119, 139, 445
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmgT120I	GGNCC	8 cut(s)	101, 119, 133, 139, 183, 184, 445, 486
BmiI	GGNNCC	4 cut(s)	121, 140, 185, 446
BmrFI	CCNGG	4 cut(s)	137, 302, 311, 428
BmsI	GCATC	2 cut(s)	156, 230
BpiI	GAAGAC	1 cut(s)	307
BpmI	CTGGAG	2 cut(s)	293, 449
Bpu10I	CCTNAGC	2 cut(s)	143, 611
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	115, 123
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 181, 673, 674
Bse1I	ACTGG	1 cut(s)	448
BseBI	CCWGG	3 cut(s)	302, 311, 428
BseDI	CCNNGG	2 cut(s)	115, 123
BseGI	GGATG	3 cut(s)	156, 221, 399
BseLI	CCNNNNNNNGG	4 cut(s)	180, 181, 673, 674
BseMII	CTCAG	4 cut(s)	157, 283, 590, 602
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	1 cut(s)	628
BseSI	GKGCMC	1 cut(s)	187
Bsh1236I	CGCG	3 cut(s)	108, 238, 383
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	4 cut(s)	135, 155, 185, 488
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	136
BsiWI	CGTACG	1 cut(s)	91
BslI	CCNNNNNNNGG	4 cut(s)	180, 181, 673, 674
BsmAI	GTCTC	1 cut(s)	610
BsnI	GGCC	4 cut(s)	135, 155, 185, 488
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	191, 329, 480
Bsp68I	TCGCGA	1 cut(s)	383
BspACI	CCGC	4 cut(s)	70, 264, 500, 575
BspANI	GGCC	4 cut(s)	135, 155, 185, 488
BspCNI	CTCAG	4 cut(s)	156, 282, 591, 603
BspFNI	CGCG	3 cut(s)	108, 238, 383
BspLI	GGNNCC	4 cut(s)	121, 140, 185, 446
BspPI	GGATC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	115, 123
BssMI	GATC	3 cut(s)	191, 329, 480
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	302, 311, 428
Bst4CI	ACNGT	5 cut(s)	96, 116, 294, 520, 697
Bst6I	CTCTTC	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	4 cut(s)	143, 269, 599, 611
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	156, 221, 399
BstFNI	CGCG	3 cut(s)	108, 238, 383
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	240, 379
BstKTI	GATC	3 cut(s)	194, 332, 483
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	3 cut(s)	191, 329, 480
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 283, 368
BstNI	CCWGG	3 cut(s)	302, 311, 428
BstSCI	CCNGG	4 cut(s)	135, 300, 309, 426
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	3 cut(s)	108, 238, 383
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	4 cut(s)	135, 155, 185, 488
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	3 cut(s)	156, 221, 399
BtsIMutI	CAGTG	2 cut(s)	299, 455
BtuMI	TCGCGA	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	2 cut(s)	240, 379
Cfr13I	GGNCC	8 cut(s)	101, 119, 133, 139, 183, 184, 445, 486
Csp6I	GTAC	1 cut(s)	92
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	4 cut(s)	143, 269, 599, 611
DpnI	GATC	3 cut(s)	193, 331, 482
DpnII	GATC	3 cut(s)	191, 329, 480
DraI	TTTAAA	1 cut(s)	571
DriI	GACNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	536
Eam1105I	GACNNNNNGTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	4 cut(s)	101, 119, 139, 445
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	3 cut(s)	300, 309, 426
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	8 cut(s)	77, 407, 531, 585, 587, 653, 672, 700
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	3 cut(s)	143, 208, 406
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	2 cut(s)	239, 378
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	2 cut(s)	293, 449
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	4 cut(s)	135, 155, 185, 488
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	2 cut(s)	240, 379
Hin6I	GCGC	2 cut(s)	238, 377
HinP1I	GCGC	2 cut(s)	238, 377
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	101, 119, 358
Hpy188I	TCNGA	5 cut(s)	196, 272, 329, 334, 600
Hpy188III	TCNNGA	2 cut(s)	382, 523
Hpy8I	GTNNAC	3 cut(s)	101, 119, 358
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	5 cut(s)	96, 116, 294, 520, 697
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 283, 368
HpyF3I	CTNAG	4 cut(s)	143, 269, 599, 611
HpySE526I	ACGT	1 cut(s)	84
HspAI	GCGC	2 cut(s)	238, 377
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	191, 329, 480
LweI	GCATC	2 cut(s)	156, 230
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	458, 493
MalI	GATC	3 cut(s)	193, 331, 482
MboI	GATC	3 cut(s)	191, 329, 480
MboII	GAAGA	2 cut(s)	307, 553
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	4 cut(s)	206, 656, 679, 689
MmeI	TCCRAC	2 cut(s)	219, 610
MseI	TTAA	2 cut(s)	570, 692
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	4 cut(s)	137, 302, 311, 428
MvaI	CCWGG	3 cut(s)	302, 311, 428
MvnI	CGCG	3 cut(s)	108, 238, 383
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 283, 368
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	3 cut(s)	191, 329, 480
NlaIV	GGNNCC	4 cut(s)	121, 140, 185, 446
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	458
NruI	TCGCGA	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	512
Pfl23II	CGTACG	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	300, 309, 426
PspGI	CCWGG	3 cut(s)	300, 309, 426
PspLI	CGTACG	1 cut(s)	91
PspN4I	GGNNCC	4 cut(s)	121, 140, 185, 446
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	8 cut(s)	101, 119, 133, 139, 183, 184, 445, 486
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	257
RruI	TCGCGA	1 cut(s)	383
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	570, 692
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	191, 329, 480
Sau96I	GGNCC	8 cut(s)	101, 119, 133, 139, 183, 184, 445, 486
ScrFI	CCNGG	4 cut(s)	137, 302, 311, 428
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	9 cut(s)	87, 258, 279, 303, 315, 326, 479, 630, 648
SfaNI	GCATC	2 cut(s)	156, 230
SinI	GGWCC	4 cut(s)	101, 119, 139, 445
Sse9I	AATT	4 cut(s)	206, 656, 679, 689
SsiI	CCGC	4 cut(s)	70, 264, 500, 575
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	4 cut(s)	135, 300, 309, 426
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	5 cut(s)	96, 116, 294, 520, 697
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	150
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	4 cut(s)	206, 656, 679, 689
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	570, 692
Tru9I	TTAA	2 cut(s)	570, 692
TscAI	CASTG	2 cut(s)	299, 455
TseFI	GTSAC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	1 cut(s)	668
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	299, 455
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	4 cut(s)	101, 119, 139, 445
XapI	RAATTY	1 cut(s)	656
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.