Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

4026791 .. 4028316

Gene Structure 1526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG052400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGGAGTAAAAGCAAGAGGGAGAAGCATTTGCCGGAAACGAGCGACGATGATTCACCGTCGTCCTCTCCTTCAAGCTCCGACATATCCGACCGGTCCTCGGAACGGCACCGGGTCCACAACATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGAACCCATCCCTGGTCTCCAAAACGCTCTCCCGCCTAATCAAATCAGACCTTGACGCCGTCCTCAAAGAGCTTCTACGGCAGGATCAGTGGCACCTGGCTCTCCAGGCCTTCTCCGCCTTCCGATCCGAATACCAACCAGACCTGTCCGTCTACGCCGAGGTGGCTTTGGCTCTCGCCAGAAATGGGATGGTGGAGGAGATAGACACTGATACCCCAGGGTACTTGGTGCGTTCTATTTGCGTCTTACAGGCTCTAATGCGGATATGTGCCAGTAGATGCATAGAGCCTTTGAAGCTTAACTGTCAAAAGTTGAGGCGTAATAAATTGCCCGATGGAACTTTGGCCTTGATCCATGTGGATGAAGTTGTTGATGAACTTCTGACAAAAGATTATTCGTGCGACATTGCCTTGCCAAGAGCTTTAAGAAGATGGACTCTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

23.21

Weight (kDa)

7.66

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	152 - 205	9e-07	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AccB1I	GGYRCC	2 cut(s)	108, 267
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	3 cut(s)	208, 291, 436
AclWI	GGATC	4 cut(s)	162, 267, 294, 520
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	6 cut(s)	100, 105, 156, 157, 187, 360
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	75, 469
AjnI	CCWGG	4 cut(s)	186, 270, 279, 391
AluBI	AGCT	4 cut(s)	78, 247, 472, 596
AluI	AGCT	4 cut(s)	78, 247, 472, 596
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	4 cut(s)	162, 267, 294, 520
AoxI	GGCC	4 cut(s)	129, 159, 282, 519
ApaI	GGGCCC	1 cut(s)	163
AsiGI	ACCGGT	1 cut(s)	93
AspS9I	GGNCC	4 cut(s)	96, 115, 159, 160
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	2 cut(s)	96, 115
BaeGI	GKGCMC	1 cut(s)	163
BanI	GGYRCC	2 cut(s)	108, 267
BanII	GRGCYC	1 cut(s)	163
BccI	CCATC	5 cut(s)	140, 190, 358, 503, 600
BceAI	ACGGC	4 cut(s)	122, 125, 218, 269
BciT130I	CCWGG	4 cut(s)	188, 272, 281, 393
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	196
BglI	GCCNNNNNGGC	1 cut(s)	338
Bme1390I	CCNGG	5 cut(s)	113, 188, 272, 281, 393
Bme18I	GGWCC	2 cut(s)	96, 115
BmgT120I	GGNCC	4 cut(s)	96, 115, 159, 160
BmiI	GGNNCC	4 cut(s)	110, 116, 161, 269
BmrFI	CCNGG	5 cut(s)	113, 188, 272, 281, 393
BmsI	GCATC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	5 cut(s)	99, 186, 333, 391, 392
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 105, 156, 157, 187, 360
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	4 cut(s)	188, 272, 281, 393
BseDI	CCNNGG	5 cut(s)	99, 186, 333, 391, 392
BseGI	GGATG	4 cut(s)	132, 182, 369, 541
BseLI	CCNNNNNNNGG	6 cut(s)	100, 105, 156, 157, 187, 360
BseMI	GCAATG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	131, 161, 284, 521
BshNI	GGYRCC	2 cut(s)	108, 267
BshTI	ACCGGT	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	94
BsiSI	CCGG	3 cut(s)	35, 94, 112
BslI	CCNNNNNNNGG	6 cut(s)	100, 105, 156, 157, 187, 360
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	4 cut(s)	131, 161, 284, 521
Bso31I	GGTCTC	1 cut(s)	196
Bsp120I	GGGCCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	167, 259, 299, 525
BspACI	CCGC	3 cut(s)	208, 291, 436
BspANI	GGCC	4 cut(s)	131, 161, 284, 521
BspLI	GGNNCC	4 cut(s)	110, 116, 161, 269
BspPI	GGATC	4 cut(s)	162, 267, 294, 520
BspT107I	GGYRCC	2 cut(s)	108, 267
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	5 cut(s)	99, 186, 333, 391, 392
BssMI	GATC	4 cut(s)	167, 259, 299, 525
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	4 cut(s)	188, 272, 281, 393
Bst4CI	ACNGT	2 cut(s)	60, 479
BstACI	GRCGYC	1 cut(s)	231
BstF5I	GGATG	4 cut(s)	132, 182, 369, 541
BstKTI	GATC	4 cut(s)	170, 262, 302, 528
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	4 cut(s)	167, 259, 299, 525
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 146, 253, 281, 290, 338, 469
BstNI	CCWGG	4 cut(s)	188, 272, 281, 393
BstSCI	CCNGG	5 cut(s)	111, 186, 270, 279, 391
BstSLI	GKGCMC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	4 cut(s)	131, 161, 284, 521
BtsCI	GGATG	4 cut(s)	132, 182, 369, 541
BtsIMutI	CAGTG	2 cut(s)	269, 381
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	96, 115, 159, 160
CseI	GACGC	2 cut(s)	239, 406
Csp6I	GTAC	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	1 cut(s)	530
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	4 cut(s)	169, 261, 301, 527
DpnII	GATC	4 cut(s)	167, 259, 299, 525
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EciI	GGCGGA	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	96, 115
EcoRII	CCWGG	4 cut(s)	186, 270, 279, 391
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	1 cut(s)	533
FaiI	YATR	4 cut(s)	86, 442, 458, 531
FatI	CATG	1 cut(s)	529
FauI	CCCGC	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	327
FokI	GGATG	4 cut(s)	119, 169, 376, 548
FriOI	GRGCYC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	4 cut(s)	131, 161, 284, 521
HapII	CCGG	3 cut(s)	35, 94, 112
HgaI	GACGC	2 cut(s)	239, 406
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	2 cut(s)	53, 610
HpaII	CCGG	3 cut(s)	35, 94, 112
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	118, 328
Hpy188I	TCNGA	8 cut(s)	82, 91, 103, 172, 223, 299, 304, 558
Hpy8I	GTNNAC	2 cut(s)	118, 328
Hpy99I	CGWCG	2 cut(s)	50, 64
HpyAV	CCTTC	3 cut(s)	81, 295, 304
HpyCH4III	ACNGT	2 cut(s)	60, 479
HpyCH4V	TGCA	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 146, 253, 281, 290, 338, 469
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	4 cut(s)	167, 259, 299, 525
LmnI	GCTCC	1 cut(s)	83
LweI	GCATC	1 cut(s)	443
MalI	GATC	4 cut(s)	169, 261, 301, 527
MboI	GATC	4 cut(s)	167, 259, 299, 525
MboII	GAAGA	1 cut(s)	615
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	3 cut(s)	105, 114, 195
MnlI	CCTC	9 cut(s)	12, 76, 109, 121, 161, 248, 328, 364, 483
Mph1103I	ATGCAT	1 cut(s)	458
MseI	TTAA	2 cut(s)	474, 599
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	3 cut(s)	35, 94, 112
MspR9I	CCNGG	5 cut(s)	113, 188, 272, 281, 393
MvaI	CCWGG	4 cut(s)	188, 272, 281, 393
MwoI	GCNNNNNNNGC	7 cut(s)	137, 146, 253, 281, 290, 338, 469
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	4 cut(s)	167, 259, 299, 525
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	4 cut(s)	110, 116, 161, 269
NmeAIII	GCCGAG	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	458
PasI	CCCWGGG	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	233
PinAI	ACCGGT	1 cut(s)	93
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Psp6I	CCWGG	4 cut(s)	186, 270, 279, 391
PspGI	CCWGG	4 cut(s)	186, 270, 279, 391
PspN4I	GGNNCC	4 cut(s)	110, 116, 161, 269
PspOMI	GGGCCC	1 cut(s)	159
PspPI	GGNCC	4 cut(s)	96, 115, 159, 160
PsuI	RGATCY	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	474, 599
Sau3AI	GATC	4 cut(s)	167, 259, 299, 525
Sau96I	GGNCC	4 cut(s)	96, 115, 159, 160
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	5 cut(s)	113, 188, 272, 281, 393
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	8 cut(s)	80, 228, 249, 273, 321, 339, 474, 598
SfaNI	GCATC	1 cut(s)	443
SinI	GGWCC	2 cut(s)	96, 115
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	1 cut(s)	500
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	3 cut(s)	208, 291, 436
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	5 cut(s)	111, 186, 270, 279, 391
TaaI	ACNGT	2 cut(s)	60, 479
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	474, 599
Tru9I	TTAA	2 cut(s)	474, 599
TscAI	CASTG	2 cut(s)	269, 388
TspDTI	ATGAA	2 cut(s)	552, 564
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	2 cut(s)	269, 388
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	96, 115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.