Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

56235921 .. 56236229

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG376000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCGTCCTCTCTTCACCCAAACCAGACCACCTTCCTCAAACCCGTACCTAGACCATTCACAACCACACCCACCCCCACCGTAGTCCGCGTTTCCACACGGTGCCTTGGTCAAAGACCGGGCCCTCAGCATCGAGACCATCCAAGCCAAGCCCTCAAAAGGGCCCAAAGATCCGACCCGAACCCATCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCAGACCTTGACGCCGTCCTCAAAGAGCTTCTACGGGCAGGATCAGTGGCACCTGGCTCTCCAGGCCTTCTCCGCCTTTCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.05

Weight (kDa)

11.65

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	102, 271
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	88, 211, 295
AclWI	GGATC	2 cut(s)	165, 271
AcyI	GRCGYC	2 cut(s)	5, 234
AdeI	CACNNNGTG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	159, 160, 190
AjnI	CCWGG	3 cut(s)	189, 274, 283
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	129, 199
AlwI	GGATC	2 cut(s)	165, 271
AoxI	GGCC	3 cut(s)	121, 162, 286
ApaI	GGGCCC	2 cut(s)	125, 166
AspS9I	GGNCC	4 cut(s)	121, 122, 162, 163
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	8
BaeGI	GKGCMC	2 cut(s)	125, 166
BanI	GGYRCC	2 cut(s)	102, 271
BanII	GRGCYC	2 cut(s)	125, 166
BbvCI	CCTCAGC	1 cut(s)	126
BccI	CCATC	2 cut(s)	147, 193
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	3 cut(s)	191, 276, 285
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	129, 199
BfaI	CTAG	1 cut(s)	51
Bme1390I	CCNGG	4 cut(s)	120, 191, 276, 285
BmgT120I	GGNCC	4 cut(s)	121, 122, 162, 163
BmiI	GGNNCC	4 cut(s)	104, 123, 164, 273
BmrFI	CCNGG	4 cut(s)	120, 191, 276, 285
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	120
BsaHI	GRCGYC	2 cut(s)	5, 234
BsaI	GGTCTC	2 cut(s)	129, 199
BsaJI	CCNNGG	2 cut(s)	106, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 160, 190
BseBI	CCWGG	3 cut(s)	191, 276, 285
BseDI	CCNNGG	2 cut(s)	106, 189
BseGI	GGATG	2 cut(s)	139, 185
BseLI	CCNNNNNNNGG	3 cut(s)	159, 160, 190
BseMII	CTCAG	1 cut(s)	140
BseSI	GKGCMC	2 cut(s)	125, 166
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	123, 164, 288
BshNI	GGYRCC	2 cut(s)	102, 271
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	3 cut(s)	159, 160, 190
BsmAI	GTCTC	2 cut(s)	129, 199
BsnI	GGCC	3 cut(s)	123, 164, 288
Bso31I	GGTCTC	2 cut(s)	129, 199
Bsp120I	GGGCCC	2 cut(s)	121, 162
Bsp1286I	GDGCHC	2 cut(s)	125, 166
Bsp143I	GATC	3 cut(s)	170, 263, 303
BspACI	CCGC	3 cut(s)	88, 211, 295
BspANI	GGCC	3 cut(s)	123, 164, 288
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	104, 123, 164, 273
BspPI	GGATC	2 cut(s)	165, 271
BspT107I	GGYRCC	2 cut(s)	102, 271
BspTNI	GGTCTC	2 cut(s)	129, 199
BssECI	CCNNGG	2 cut(s)	106, 189
BssMI	GATC	3 cut(s)	170, 263, 303
BssNI	GRCGYC	2 cut(s)	5, 234
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	3 cut(s)	191, 276, 285
Bst4CI	ACNGT	2 cut(s)	82, 102
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	2 cut(s)	5, 234
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	139, 185
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	173, 266, 306
BstMAI	GTCTC	2 cut(s)	129, 199
BstMBI	GATC	3 cut(s)	170, 263, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	285, 294
BstNI	CCWGG	3 cut(s)	191, 276, 285
BstSCI	CCNGG	4 cut(s)	118, 189, 274, 283
BstSLI	GKGCMC	2 cut(s)	125, 166
BstUI	CGCG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	123, 164, 288
BtsCI	GGATG	2 cut(s)	139, 185
BtsIMutI	CAGTG	1 cut(s)	273
Cfr13I	GGNCC	4 cut(s)	121, 122, 162, 163
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	47
CviJI	RGCY	7 cut(s)	123, 147, 152, 164, 250, 279, 288
CviKI_1	RGCY	7 cut(s)	123, 147, 152, 164, 250, 279, 288
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	172, 265, 305
DpnII	GATC	3 cut(s)	170, 263, 303
DraIII	CACNNNGTG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	2 cut(s)	125, 166
Eco31I	GGTCTC	2 cut(s)	129, 199
EcoO109I	RGGNCCY	2 cut(s)	122, 162
EcoRII	CCWGG	3 cut(s)	189, 274, 283
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	2 cut(s)	125, 166
ErhI	CCWWGG	1 cut(s)	106
FauI	CCCGC	1 cut(s)	218
FokI	GGATG	2 cut(s)	126, 172
FriOI	GRGCYC	2 cut(s)	125, 166
FspBI	CTAG	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	123, 164, 288
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	2 cut(s)	5, 234
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	8
Hpy188I	TCNGA	3 cut(s)	175, 226, 308
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	43, 299
HpyCH4III	ACNGT	2 cut(s)	82, 102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	285, 294
HpyF3I	CTNAG	1 cut(s)	126
Hsp92I	GRCGYC	2 cut(s)	5, 234
Kzo9I	GATC	3 cut(s)	170, 263, 303
LpnPI	CCDG	9 cut(s)	38, 132, 176, 203, 246, 261, 270, 288, 297
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	51
MalI	GATC	3 cut(s)	172, 265, 305
MboI	GATC	3 cut(s)	170, 263, 303
MboII	GAAGA	1 cut(s)	5
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	125, 166
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	6 cut(s)	19, 47, 135, 164, 215, 251
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	4 cut(s)	120, 191, 276, 285
MvaI	CCWGG	3 cut(s)	191, 276, 285
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	285, 294
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	3 cut(s)	170, 263, 303
NlaIV	GGNNCC	4 cut(s)	104, 123, 164, 273
PceI	AGGCCT	1 cut(s)	288
PflFI	GACNNNGTC	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	189, 274, 283
PspGI	CCWGG	3 cut(s)	189, 274, 283
PspN4I	GGNNCC	4 cut(s)	104, 123, 164, 273
PspOMI	GGGCCC	2 cut(s)	121, 162
PspPI	GGNCC	4 cut(s)	121, 122, 162, 163
PsuI	RGATCY	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	170, 263, 303
Sau96I	GGNCC	4 cut(s)	121, 122, 162, 163
ScrFI	CCNGG	4 cut(s)	120, 191, 276, 285
SduI	GDGCHC	2 cut(s)	125, 166
SetI	ASST	5 cut(s)	35, 52, 231, 252, 277
SfaNI	GCATC	1 cut(s)	139
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	88, 211, 295
SspMI	CTAG	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	4 cut(s)	118, 189, 274, 283
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	82, 102
TaqI	TCGA	2 cut(s)	133, 302
TscAI	CASTG	1 cut(s)	273
TspRI	CASTG	1 cut(s)	273
Tth111I	GACNNNGTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.