Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

26759928 .. 26760467

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGTCCTCTCTTCACCCAAACACGACCACCTTCCTCAAACCCGTACCCAGACCATTCACAACCACACCCACCCCCACCGTAGTCCGAGTTCCCACACGGTGCCTTGGTCAAAGACCGGGTCCTCAGCATCGAGGCCATCAAGCCGTCCAAGCCCTCAAACGGACCCAAAGATCTGACCCGAACCCATCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCAGACCTTGACGTCGTCCTCAAAGAGCTTCTACAGCAGGATCAGTGGCACCTGGCTCTCCAGGCCTTCTCCGCCTTCCGATCCGAATACCAACCCAACCTGTCCGTCTACGCCGAGGTGGCTTTGGCTCTCGCCAGAAATGGGATGGTGGAAGAGATAGACACTCTGGTTTGTGAGCTCGAAAAGGAGAGTGAGGAGTCCAATGGGACAGTGATAAGGTTTAGTGGTTTCGGAGATGAGAGAGAGAGAGAGAGAGAATCTGACTTCAAGGGTATTTTAGGAAGTGTAAAAATATTTGAGATGAAATATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.23

Weight (kDa)

7.8

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AatII	GACGTC	1 cut(s)	240
AccB1I	GGYRCC	2 cut(s)	102, 273
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	2 cut(s)	214, 297
AclWI	GGATC	2 cut(s)	273, 300
AcyI	GRCGYC	2 cut(s)	5, 237
AdeI	CACNNNGTG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	162, 193, 366
AgsI	TTSAA	1 cut(s)	493
AjnI	CCWGG	3 cut(s)	192, 276, 285
AluBI	AGCT	2 cut(s)	253, 403
AluI	AGCT	2 cut(s)	253, 403
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	273, 300
AoxI	GGCC	2 cut(s)	136, 288
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspS9I	GGNCC	2 cut(s)	122, 165
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	122, 165
BanI	GGYRCC	2 cut(s)	102, 273
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	126
BccI	CCATC	3 cut(s)	147, 196, 364
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	3 cut(s)	194, 278, 287
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	202
BfmI	CTRYAG	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	173
Bme1390I	CCNGG	4 cut(s)	120, 194, 278, 287
Bme18I	GGWCC	2 cut(s)	122, 165
BmgT120I	GGNCC	2 cut(s)	122, 165
BmiI	GGNNCC	4 cut(s)	104, 123, 167, 275
BmrFI	CCNGG	4 cut(s)	120, 194, 278, 287
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	120
BsaHI	GRCGYC	2 cut(s)	5, 237
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	106, 192, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 193, 366
BseBI	CCWGG	3 cut(s)	194, 278, 287
BseDI	CCNNGG	3 cut(s)	106, 192, 339
BseGI	GGATG	2 cut(s)	188, 375
BseLI	CCNNNNNNNGG	3 cut(s)	162, 193, 366
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	138, 290
BshNI	GGYRCC	2 cut(s)	102, 273
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	162, 193, 366
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	138, 290
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	173, 265, 305
BspACI	CCGC	2 cut(s)	214, 297
BspANI	GGCC	2 cut(s)	138, 290
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	4 cut(s)	104, 123, 167, 275
BspPI	GGATC	2 cut(s)	273, 300
BspT107I	GGYRCC	2 cut(s)	102, 273
BspTNI	GGTCTC	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	106, 192, 339
BssMI	GATC	3 cut(s)	173, 265, 305
BssNI	GRCGYC	2 cut(s)	5, 237
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	3 cut(s)	194, 278, 287
Bst4CI	ACNGT	3 cut(s)	82, 102, 436
Bst6I	CTCTTC	2 cut(s)	18, 372
BstACI	GRCGYC	2 cut(s)	5, 237
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	188, 375
BstKTI	GATC	3 cut(s)	176, 268, 308
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	173, 265, 305
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 259, 287, 296, 344
BstNI	CCWGG	3 cut(s)	194, 278, 287
BstSCI	CCNGG	4 cut(s)	118, 192, 276, 285
BstSFI	CTRYAG	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	138, 290
BtsCI	GGATG	2 cut(s)	188, 375
BtsIMutI	CAGTG	2 cut(s)	275, 441
Cfr13I	GGNCC	2 cut(s)	122, 165
Csp6I	GTAC	1 cut(s)	47
CviJI	RGCY	9 cut(s)	138, 146, 155, 253, 281, 290, 347, 353, 403
CviKI_1	RGCY	9 cut(s)	138, 146, 155, 253, 281, 290, 347, 353, 403
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	175, 267, 307
DpnII	GATC	3 cut(s)	173, 265, 305
DraIII	CACNNNGTG	1 cut(s)	102
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	18, 372
EarI	CTCTTC	2 cut(s)	18, 372
EciI	GGCGGA	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	122, 165
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	3 cut(s)	192, 276, 285
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	106
FaqI	GGGAC	1 cut(s)	445
FauI	CCCGC	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	2 cut(s)	175, 382
FriOI	GRGCYC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	138, 290
HapII	CCGG	1 cut(s)	119
Hin1I	GRCGYC	2 cut(s)	5, 237
HinfI	GANTC	2 cut(s)	422, 482
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	7 cut(s)	89, 178, 229, 305, 310, 458, 487
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	43, 301, 310
HpyCH4III	ACNGT	3 cut(s)	82, 102, 436
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 259, 287, 296, 344
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	2 cut(s)	5, 237
Kzo9I	GATC	3 cut(s)	173, 265, 305
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	237
MalI	GATC	3 cut(s)	175, 267, 307
MboI	GATC	3 cut(s)	173, 265, 305
MboII	GAAGA	2 cut(s)	5, 389
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	9 cut(s)	19, 47, 128, 135, 167, 218, 254, 334, 412
MseI	TTAA	1 cut(s)	538
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	4 cut(s)	120, 194, 278, 287
MvaI	CCWGG	3 cut(s)	194, 278, 287
MwoI	GCNNNNNNNGC	5 cut(s)	152, 259, 287, 296, 344
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	3 cut(s)	173, 265, 305
NlaIV	GGNNCC	4 cut(s)	104, 123, 167, 275
NmeAIII	GCCGAG	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	482
PflFI	GACNNNGTC	2 cut(s)	120, 239
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	3 cut(s)	192, 276, 285
PspGI	CCWGG	3 cut(s)	192, 276, 285
PspN4I	GGNNCC	4 cut(s)	104, 123, 167, 275
PspPI	GGNCC	2 cut(s)	122, 165
PspPPI	RGGWCCY	1 cut(s)	122
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsuI	RGATCY	1 cut(s)	173
PsyI	GACNNNGTC	2 cut(s)	120, 239
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	538
Sau3AI	GATC	3 cut(s)	173, 265, 305
Sau96I	GGNCC	2 cut(s)	122, 165
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	4 cut(s)	120, 194, 278, 287
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	9 cut(s)	35, 234, 240, 255, 279, 327, 345, 405, 446
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	257
SinI	GGWCC	2 cut(s)	122, 165
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	2 cut(s)	214, 297
SspI	AATATT	2 cut(s)	519, 533
SstI	GAGCTC	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	4 cut(s)	118, 192, 276, 285
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	82, 102, 436
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	133, 405
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	1 cut(s)	538
Tru9I	TTAA	1 cut(s)	538
TscAI	CASTG	2 cut(s)	275, 441
TspGWI	ACGGA	2 cut(s)	178, 319
TspRI	CASTG	2 cut(s)	275, 441
Tth111I	GACNNNGTC	2 cut(s)	120, 239
VpaK11BI	GGWCC	2 cut(s)	122, 165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	333
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.