Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000743.1

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

9168 .. 9994

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000743.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgattcaccgtcgtcctctccttcaagctccgacgtatccgaccggtcctcgaaacggcgtcatcgccaccgtcacagaatcgacgacggctccagacgagaaagagaaaggagaagggagaggagagagaaacggcgaatccgcgttcccacacggtgccttggtcaaagaccgggtcctcagcatcgaggccatccaagccgtccaagccctcaaacgggcccaaagatctgacccgaacccatccctggtctccaaaaccctctcccgcttaatcaagtcagaccttgacgccgtcctcaaagagcttctacagcaggatcagtggcacctggctctccaggccttctccgccttccgatccgaataccaacccgacctgtccgtctacgccgaggtggctttggctcttcccagaaatgggatggtggaggagatagaaactctggtttgtgagctcgaaaaggagagtgaggagtccaatgggacagtgataaggttcagtggtttcggagatgtgagagagagagaatctgacttcaagggtattttaggaagtgtaaaaatatttgagatgaaatattattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.85

Weight (kDa)

5.38

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AccB1I	GGYRCC	2 cut(s)	158, 330
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	146
AciI	CCGC	3 cut(s)	144, 271, 354
AclWI	GGATC	2 cut(s)	330, 357
AcyI	GRCGYC	2 cut(s)	60, 294
AdeI	CACNNNGTG	1 cut(s)	158
AfiI	CCNNNNNNNGG	6 cut(s)	56, 219, 220, 250, 422, 423
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	26, 544
AjnI	CCWGG	3 cut(s)	249, 333, 342
AluBI	AGCT	3 cut(s)	29, 310, 460
AluI	AGCT	3 cut(s)	29, 310, 460
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	2 cut(s)	330, 357
AoxI	GGCC	3 cut(s)	192, 222, 345
ApaI	GGGCCC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AsiGI	ACCGGT	1 cut(s)	44
AspS9I	GGNCC	4 cut(s)	47, 178, 222, 223
AsuC2I	CCSGG	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	47, 178
BaeGI	GKGCMC	1 cut(s)	226
BanI	GGYRCC	2 cut(s)	158, 330
BanII	GRGCYC	2 cut(s)	226, 462
Bbv12I	GWGCWC	1 cut(s)	462
BbvCI	CCTCAGC	1 cut(s)	182
BccI	CCATC	3 cut(s)	203, 253, 421
BceAI	ACGGC	5 cut(s)	73, 105, 151, 188, 281
BciT130I	CCWGG	3 cut(s)	251, 335, 344
BciVI	GTATCC	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	401
BglII	AGATCT	1 cut(s)	230
Bme1390I	CCNGG	4 cut(s)	176, 251, 335, 344
Bme18I	GGWCC	2 cut(s)	47, 178
BmgT120I	GGNCC	4 cut(s)	47, 178, 222, 223
BmiI	GGNNCC	5 cut(s)	93, 160, 179, 224, 332
BmrFI	CCNGG	4 cut(s)	176, 251, 335, 344
BmsI	GCATC	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	78, 326
Bpu10I	CCTNAGC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	176
BsaHI	GRCGYC	2 cut(s)	60, 294
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	162, 249, 396
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 219, 220, 250, 422, 423
Bse118I	RCCGGY	1 cut(s)	44
BseBI	CCWGG	3 cut(s)	251, 335, 344
BseDI	CCNNGG	3 cut(s)	162, 249, 396
BseGI	GGATG	3 cut(s)	195, 245, 432
BseLI	CCNNNNNNNGG	6 cut(s)	56, 219, 220, 250, 422, 423
BseMII	CTCAG	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	138, 449, 491
BseSI	GKGCMC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	194, 224, 347
BshNI	GGYRCC	2 cut(s)	158, 330
BshTI	ACCGGT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	45, 175
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	6 cut(s)	56, 219, 220, 250, 422, 423
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	3 cut(s)	194, 224, 347
Bso31I	GGTCTC	1 cut(s)	259
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	226, 462
Bsp143I	GATC	3 cut(s)	230, 322, 362
BspACI	CCGC	3 cut(s)	144, 271, 354
BspANI	GGCC	3 cut(s)	194, 224, 347
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	5 cut(s)	93, 160, 179, 224, 332
BspPI	GGATC	2 cut(s)	330, 357
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	2 cut(s)	158, 330
BspTNI	GGTCTC	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	162, 249, 396
BssMI	GATC	3 cut(s)	230, 322, 362
BssNI	GRCGYC	2 cut(s)	60, 294
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	3 cut(s)	251, 335, 344
Bst4CI	ACNGT	4 cut(s)	11, 73, 158, 493
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	2 cut(s)	60, 294
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	3 cut(s)	195, 245, 432
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	3 cut(s)	233, 325, 365
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	3 cut(s)	230, 322, 362
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	6 cut(s)	200, 209, 316, 344, 353, 401
BstNI	CCWGG	3 cut(s)	251, 335, 344
BstSCI	CCNGG	4 cut(s)	174, 249, 333, 342
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	194, 224, 347
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	195, 245, 432
BtsIMutI	CAGTG	3 cut(s)	332, 498, 511
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	4 cut(s)	47, 178, 222, 223
CseI	GACGC	2 cut(s)	49, 302
CspAI	ACCGGT	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	3 cut(s)	232, 324, 364
DpnII	GATC	3 cut(s)	230, 322, 362
DraIII	CACNNNGTG	1 cut(s)	158
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	347
Eco24I	GRGCYC	2 cut(s)	226, 462
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	47, 178
Eco53kI	GAGCTC	1 cut(s)	460
EcoICRI	GAGCTC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	249, 333, 342
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	226, 462
ErhI	CCWWGG	1 cut(s)	162
FaqI	GGGAC	1 cut(s)	502
FauI	CCCGC	1 cut(s)	278
FblI	GTMKAC	1 cut(s)	390
FokI	GGATG	3 cut(s)	182, 232, 439
FriOI	GRGCYC	2 cut(s)	226, 462
GsuI	CTGGAG	2 cut(s)	78, 326
HaeIII	GGCC	3 cut(s)	194, 224, 347
HapII	CCGG	2 cut(s)	45, 175
HgaI	GACGC	2 cut(s)	49, 302
Hin1I	GRCGYC	2 cut(s)	60, 294
HinfI	GANTC	5 cut(s)	4, 80, 140, 479, 533
HpaII	CCGG	2 cut(s)	45, 175
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	8 cut(s)	33, 42, 235, 286, 362, 367, 515, 538
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	4 cut(s)	15, 37, 88, 91
HpyAV	CCTTC	4 cut(s)	32, 110, 358, 367
HpyCH4III	ACNGT	4 cut(s)	11, 73, 158, 493
HpyCH4IV	ACGT	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	6 cut(s)	200, 209, 316, 344, 353, 401
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	2 cut(s)	60, 294
Kzo9I	GATC	3 cut(s)	230, 322, 362
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	34, 97
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	232, 324, 364
MboI	GATC	3 cut(s)	230, 322, 362
MboII	GAAGA	1 cut(s)	404
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	2 cut(s)	226, 462
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	56, 65
MseI	TTAA	2 cut(s)	275, 589
MspI	CCGG	2 cut(s)	45, 175
MspR9I	CCNGG	4 cut(s)	176, 251, 335, 344
MvaI	CCWGG	3 cut(s)	251, 335, 344
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	6 cut(s)	200, 209, 316, 344, 353, 401
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	3 cut(s)	230, 322, 362
NlaIV	GGNNCC	5 cut(s)	93, 160, 179, 224, 332
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	4, 80, 140, 533
PflFI	GACNNNGTC	2 cut(s)	176, 296
PinAI	ACCGGT	1 cut(s)	44
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	3 cut(s)	249, 333, 342
PspGI	CCWGG	3 cut(s)	249, 333, 342
PspN4I	GGNNCC	5 cut(s)	93, 160, 179, 224, 332
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	4 cut(s)	47, 178, 222, 223
PspPPI	RGGWCCY	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	230
PsyI	GACNNNGTC	2 cut(s)	176, 296
SacI	GAGCTC	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	275, 589
Sau3AI	GATC	3 cut(s)	230, 322, 362
Sau96I	GGNCC	4 cut(s)	47, 178, 222, 223
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	4 cut(s)	176, 251, 335, 344
SduI	GDGCHC	2 cut(s)	226, 462
SetI	ASST	9 cut(s)	31, 38, 291, 312, 336, 384, 402, 462, 503
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	314
SinI	GGWCC	2 cut(s)	47, 178
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	3 cut(s)	144, 271, 354
SspI	AATATT	2 cut(s)	570, 584
SstI	GAGCTC	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	4 cut(s)	174, 249, 333, 342
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	4 cut(s)	11, 73, 158, 493
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	52, 83, 189, 462
TfiI	GAWTC	4 cut(s)	4, 80, 140, 533
Tru1I	TTAA	2 cut(s)	275, 589
Tru9I	TTAA	2 cut(s)	275, 589
TscAI	CASTG	3 cut(s)	332, 498, 511
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	3 cut(s)	332, 498, 511
Tth111I	GACNNNGTC	2 cut(s)	176, 296
VpaK11BI	GGWCC	2 cut(s)	47, 178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.