Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

51051418 .. 51053171

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG442000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGGAGTAAAAGCAAGAGGGAGAAGCATTTGCCAGAAACGAGCGACGATGATTCACCGTCGTCCTCTCCTTCAAGCTCCGACGTATCCGACCGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGAACCCATCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCAGACCTTGACGCCGTCCTCAAAGAGCTTCTACGGCAGGATCAGTGGCACCTGGCTCTCCAGGCCTTCTCCGCCTTCCGATCCGAATACCAACCCGACCTGTCCGTCTACGCCGAGGTGGCTTTGGCTCTCGCCAGAAATGGGATGGTGGAGGAGATAGACACTCTGGTTTGTGAGCTCGAAAAGGAGAGTGAGGAGTCCAGTGGGACAGTGATAAGAGACAGCATCGAGCATGTTGGAGATGAAAGAAGCCGCCCCTCTGAGCGTCTCGGCCAGAATGATATTGTCATGGATGAGAACGTCATGGCAGTAATTTCTAGCAATAGGGACCCGCGAGAGAAGAAGTGGGATGGGTTCGATTTCTCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.9

Weight (kDa)

4.74

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	526
AciI	CCGC	5 cut(s)	94, 181, 264, 445, 524
AclWI	GGATC	3 cut(s)	135, 240, 267
AcoI	YGGCCR	1 cut(s)	463
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	5 cut(s)	100, 129, 130, 160, 333
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	3 cut(s)	159, 243, 252
AluBI	AGCT	3 cut(s)	78, 220, 370
AluI	AGCT	3 cut(s)	78, 220, 370
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	3 cut(s)	169, 405, 464
AlwI	GGATC	3 cut(s)	135, 240, 267
AoxI	GGCC	4 cut(s)	102, 132, 255, 463
ApaI	GGGCCC	1 cut(s)	136
AspS9I	GGNCC	3 cut(s)	132, 133, 520
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	2 cut(s)	136, 372
Bbv12I	GWGCWC	1 cut(s)	372
BccI	CCATC	4 cut(s)	113, 163, 331, 536
BceAI	ACGGC	3 cut(s)	98, 191, 242
BciT130I	CCWGG	3 cut(s)	161, 245, 254
BciVI	GTATCC	1 cut(s)	97
BcoDI	GTCTC	3 cut(s)	169, 405, 464
BfaI	CTAG	1 cut(s)	510
BfuI	GTATCC	1 cut(s)	97
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	161, 245, 254
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	3 cut(s)	132, 133, 520
BmiI	GGNNCC	4 cut(s)	134, 242, 521, 522
BmrFI	CCNGG	3 cut(s)	161, 245, 254
BmsI	GCATC	2 cut(s)	105, 426
BpmI	CTGGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	159, 306
Bsc4I	CCNNNNNNNGG	5 cut(s)	100, 129, 130, 160, 333
Bse1I	ACTGG	1 cut(s)	393
BseBI	CCWGG	3 cut(s)	161, 245, 254
BseDI	CCNNGG	2 cut(s)	159, 306
BseGI	GGATG	5 cut(s)	105, 155, 342, 490, 547
BseLI	CCNNNNNNNGG	5 cut(s)	100, 129, 130, 160, 333
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	359, 401
BseSI	GKGCMC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	526
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	104, 134, 257, 465
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	372
BslFI	GGGAC	2 cut(s)	412, 533
BslI	CCNNNNNNNGG	5 cut(s)	100, 129, 130, 160, 333
BsmAI	GTCTC	3 cut(s)	169, 405, 464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	412, 533
BsnI	GGCC	4 cut(s)	104, 134, 257, 465
Bso31I	GGTCTC	1 cut(s)	169
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	136, 372
Bsp143I	GATC	3 cut(s)	140, 232, 272
BspACI	CCGC	5 cut(s)	94, 181, 264, 445, 524
BspANI	GGCC	4 cut(s)	104, 134, 257, 465
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	134, 242, 521, 522
BspPI	GGATC	3 cut(s)	135, 240, 267
BspT107I	GGYRCC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	159, 306
BssMI	GATC	3 cut(s)	140, 232, 272
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	161, 245, 254
Bst4CI	ACNGT	2 cut(s)	60, 403
BstACI	GRCGYC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	5 cut(s)	105, 155, 342, 490, 547
BstFNI	CGCG	1 cut(s)	526
BstKTI	GATC	3 cut(s)	143, 235, 275
BstMAI	GTCTC	3 cut(s)	169, 405, 464
BstMBI	GATC	3 cut(s)	140, 232, 272
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 119, 226, 254, 263, 311
BstNI	CCWGG	3 cut(s)	161, 245, 254
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	3 cut(s)	159, 243, 252
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	4 cut(s)	104, 134, 257, 465
BtsCI	GGATG	5 cut(s)	105, 155, 342, 490, 547
BtsIMutI	CAGTG	3 cut(s)	242, 400, 408
Cfr13I	GGNCC	3 cut(s)	132, 133, 520
CseI	GACGC	2 cut(s)	212, 446
CviAII	CATG	3 cut(s)	425, 481, 496
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	3 cut(s)	142, 234, 274
DpnII	GATC	3 cut(s)	140, 232, 272
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	463
EciI	GGCGGA	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	2 cut(s)	136, 372
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	3 cut(s)	159, 243, 252
EcoT38I	GRGCYC	2 cut(s)	136, 372
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	3 cut(s)	428, 484, 499
FaiI	YATR	4 cut(s)	426, 482, 497, 562
FaqI	GGGAC	2 cut(s)	412, 533
FatI	CATG	3 cut(s)	424, 480, 495
FauI	CCCGC	2 cut(s)	188, 531
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	5 cut(s)	92, 142, 349, 497, 554
FriOI	GRGCYC	2 cut(s)	136, 372
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	104, 134, 257, 465
HgaI	GACGC	2 cut(s)	212, 446
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	428, 484, 499
HinfI	GANTC	2 cut(s)	53, 389
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	7 cut(s)	82, 91, 145, 196, 272, 277, 454
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	3 cut(s)	50, 64, 86
HpyAV	CCTTC	3 cut(s)	81, 268, 277
HpyCH4III	ACNGT	2 cut(s)	60, 403
HpyCH4IV	ACGT	2 cut(s)	84, 492
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 119, 226, 254, 263, 311
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	2 cut(s)	84, 492
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	428, 484, 499
KflI	GGGWCCC	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	140, 232, 272
LmnI	GCTCC	1 cut(s)	83
LweI	GCATC	2 cut(s)	105, 426
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	84, 492
MalI	GATC	3 cut(s)	142, 234, 274
MboI	GATC	3 cut(s)	140, 232, 272
MboII	GAAGA	1 cut(s)	544
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	136, 372
MluCI	AATT	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	4 cut(s)	105, 114, 168, 409
MspR9I	CCNGG	3 cut(s)	161, 245, 254
MvaI	CCWGG	3 cut(s)	161, 245, 254
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	6 cut(s)	110, 119, 226, 254, 263, 311
NdeII	GATC	3 cut(s)	140, 232, 272
NlaIII	CATG	3 cut(s)	428, 484, 499
NlaIV	GGNNCC	4 cut(s)	134, 242, 521, 522
NmeAIII	GCCGAG	2 cut(s)	331, 441
NspI	RCATGY	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	446
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	3 cut(s)	159, 243, 252
PspGI	CCWGG	3 cut(s)	159, 243, 252
PspN4I	GGNNCC	4 cut(s)	134, 242, 521, 522
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	132, 133, 520
PspPPI	RGGWCCY	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	372
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	3 cut(s)	140, 232, 272
Sau96I	GGNCC	3 cut(s)	132, 133, 520
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	3 cut(s)	161, 245, 254
SduI	GDGCHC	2 cut(s)	136, 372
SetI	ASST	9 cut(s)	80, 87, 201, 222, 246, 294, 312, 372, 495
SfaNI	GCATC	2 cut(s)	105, 426
SinI	GGWCC	1 cut(s)	520
Sse9I	AATT	1 cut(s)	504
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	5 cut(s)	94, 181, 264, 445, 524
SspMI	CTAG	1 cut(s)	510
SstI	GAGCTC	1 cut(s)	372
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	159, 243, 252
TaaI	ACNGT	2 cut(s)	60, 403
TaiI	ACGT	2 cut(s)	87, 495
TaqI	TCGA	4 cut(s)	99, 372, 420, 549
TasI	AATT	1 cut(s)	504
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	3 cut(s)	242, 400, 408
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	3 cut(s)	242, 400, 408
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	520
XceI	RCATGY	1 cut(s)	428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.