Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

54024870 .. 54025733

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGTCCTCTCTTCACCCAAACCCGACCACCTTCCTCAAACCCGTACCCAGACCCAGACCATTCACAACCACGCCCACCCCCACCGTCGTCCGCGTTCCCGTACGGTGCGGCCCACGCGACAAGCGTGGACCCTTGGTCAAAGGCCGGGTCCTCAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGGACCCATCCCACCTCCCCGCCCTGGCCTTCTCTGCCTTCCGATCGGAATACCAACCCGACCTGTCCGTCTACACCGAGGTGGCTTTGGCGCTCGCCAGAAATGGGATGGTGGAGGAGATAGACACTCTGGTTTGTGAGCTCCAAAAGGAGAGCGGAGGAGTCCAGTGGGACAGTGATAAGGGGCTGATAAGGTTGATCAAGGCCGTCATTGGCGCCGACCGGAGGGAATCGACGGTCAGGATTTACGAGGTGCTGAAGAGGAAAGGATGGGGGTCTAGTAGTTTTAAAGCGGATGAGTATATGGTTAGGGTGTTGAGCAAGGGATTGAGGAGGCTTGGTGAGGCTGAACTAGCTGATGAGGTTGATGTCAAATTTGGAAAACTCAACATCATTCTCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.68

Weight (kDa)

9.76

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	2 cut(s)	96, 120
AciI	CCGC	5 cut(s)	94, 111, 231, 366, 503
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	488
AcyI	GRCGYC	2 cut(s)	5, 426
AfaI	GTAC	2 cut(s)	48, 105
AfiI	CCNNNNNNNGG	5 cut(s)	192, 193, 235, 315, 435
AhdI	GACNNNNNGTC	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	234
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	2 cut(s)	352, 566
AluI	AGCT	2 cut(s)	352, 566
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	6 cut(s)	112, 145, 165, 195, 237, 414
ApaI	GGGCCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	584
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	2 cut(s)	304, 428
AspS9I	GGNCC	6 cut(s)	113, 131, 151, 195, 196, 214
AsuC2I	CCSGG	2 cut(s)	149, 212
AsuHPI	GGTGA	2 cut(s)	8, 563
AvaII	GGWCC	3 cut(s)	131, 151, 214
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	2 cut(s)	199, 354
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	155
BccI	CCATC	4 cut(s)	176, 226, 313, 474
BceAI	ACGGC	2 cut(s)	161, 401
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	2 cut(s)	149, 212
BfaI	CTAG	2 cut(s)	489, 563
BfoI	RGCGCY	2 cut(s)	305, 429
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	3 cut(s)	149, 212, 236
Bme18I	GGWCC	3 cut(s)	131, 151, 214
BmeRI	GACNNNNNGTC	1 cut(s)	137
BmgT120I	GGNCC	6 cut(s)	113, 131, 151, 195, 196, 214
BmiI	GGNNCC	5 cut(s)	133, 152, 197, 216, 427
BmrFI	CCNGG	3 cut(s)	149, 212, 236
BmsI	GCATC	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	149, 212
BsaHI	GRCGYC	2 cut(s)	5, 426
BsaJI	CCNNGG	3 cut(s)	135, 234, 288
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 193, 235, 315, 435
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	135, 234, 288
BseGI	GGATG	5 cut(s)	168, 218, 324, 485, 511
BseLI	CCNNNNNNNGG	5 cut(s)	192, 193, 235, 315, 435
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	3 cut(s)	341, 384, 556
BseSI	GKGCMC	1 cut(s)	199
Bsh1236I	CGCG	2 cut(s)	96, 120
Bsh1285I	CGRYCG	2 cut(s)	257, 433
BshFI	GGCC	6 cut(s)	114, 147, 167, 197, 239, 416
BshNI	GGYRCC	1 cut(s)	425
BsiEI	CGRYCG	2 cut(s)	257, 433
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	3 cut(s)	148, 212, 433
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	5 cut(s)	192, 193, 235, 315, 435
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	6 cut(s)	114, 147, 167, 197, 239, 416
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	199, 354
Bsp143I	GATC	3 cut(s)	203, 254, 408
BspACI	CCGC	5 cut(s)	94, 111, 231, 366, 503
BspANI	GGCC	6 cut(s)	114, 147, 167, 197, 239, 416
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	96, 120
BspLI	GGNNCC	5 cut(s)	133, 152, 197, 216, 427
BspPI	GGATC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	425
BsrBI	CCGCTC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	3 cut(s)	135, 234, 288
BssMI	GATC	3 cut(s)	203, 254, 408
BssNI	GRCGYC	2 cut(s)	5, 426
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	4 cut(s)	88, 108, 386, 448
Bst6I	CTCTTC	2 cut(s)	18, 464
BstACI	GRCGYC	2 cut(s)	5, 426
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	168, 218, 324, 485, 511
BstFNI	CGCG	2 cut(s)	96, 120
BstH2I	RGCGCY	2 cut(s)	305, 429
BstHHI	GCGC	2 cut(s)	304, 428
BstKTI	GATC	3 cut(s)	206, 257, 411
BstMBI	GATC	3 cut(s)	203, 254, 408
BstMCI	CGRYCG	2 cut(s)	257, 433
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 173, 182, 245, 563
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	3 cut(s)	147, 210, 234
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	2 cut(s)	96, 120
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	6 cut(s)	114, 147, 167, 197, 239, 416
BtsCI	GGATG	5 cut(s)	168, 218, 324, 485, 511
BtsIMutI	CAGTG	2 cut(s)	383, 391
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	2 cut(s)	304, 428
Cfr13I	GGNCC	6 cut(s)	113, 131, 151, 195, 196, 214
Csp6I	GTAC	2 cut(s)	47, 104
CviQI	GTAC	2 cut(s)	47, 104
DdeI	CTNAG	1 cut(s)	155
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	3 cut(s)	205, 256, 410
DpnII	GATC	3 cut(s)	203, 254, 408
DraI	TTTAAA	1 cut(s)	499
DrdI	GACNNNNNNGTC	1 cut(s)	278
DriI	GACNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	2 cut(s)	18, 464
Eam1105I	GACNNNNNGTC	1 cut(s)	137
EarI	CTCTTC	2 cut(s)	18, 464
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	199, 354
Eco47I	GGWCC	3 cut(s)	131, 151, 214
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	199, 354
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	135
FaiI	YATR	2 cut(s)	513, 515
FaqI	GGGAC	1 cut(s)	395
FauI	CCCGC	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	5 cut(s)	155, 205, 331, 492, 518
FriOI	GRGCYC	2 cut(s)	199, 354
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	489, 563
GlaI	GCGC	2 cut(s)	303, 427
GluI	GCNGC	1 cut(s)	112
HaeII	RGCGCY	2 cut(s)	305, 429
HaeIII	GGCC	6 cut(s)	114, 147, 167, 197, 239, 416
HapII	CCGG	3 cut(s)	148, 212, 433
HhaI	GCGC	2 cut(s)	304, 428
Hin1I	GRCGYC	2 cut(s)	5, 426
Hin6I	GCGC	2 cut(s)	302, 426
HinP1I	GCGC	2 cut(s)	302, 426
HinfI	GANTC	2 cut(s)	372, 440
HpaII	CCGG	3 cut(s)	148, 212, 433
HphI	GGTGA	2 cut(s)	8, 563
Hpy166II	GTNNAC	2 cut(s)	131, 283
Hpy188I	TCNGA	4 cut(s)	208, 254, 259, 611
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	2 cut(s)	131, 283
Hpy99I	CGWCG	2 cut(s)	92, 448
HpyAV	CCTTC	3 cut(s)	43, 250, 259
HpyCH4III	ACNGT	4 cut(s)	88, 108, 386, 448
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 173, 182, 245, 563
HpyF3I	CTNAG	1 cut(s)	155
Hsp92I	GRCGYC	2 cut(s)	5, 426
HspAI	GCGC	2 cut(s)	302, 426
KasI	GGCGCC	1 cut(s)	425
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	3 cut(s)	203, 254, 408
LmnI	GCTCC	1 cut(s)	357
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	489, 563
MalI	GATC	3 cut(s)	205, 256, 410
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	3 cut(s)	203, 254, 408
MboII	GAAGA	2 cut(s)	5, 481
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	199, 354
MluCI	AATT	1 cut(s)	584
Mly113I	GGCGCC	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	231
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	3 cut(s)	148, 212, 433
MspR9I	CCNGG	3 cut(s)	149, 212, 236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	96, 120
MwoI	GCNNNNNNNGC	5 cut(s)	117, 173, 182, 245, 563
NarI	GGCGCC	1 cut(s)	426
NciI	CCSGG	2 cut(s)	149, 212
NdeII	GATC	3 cut(s)	203, 254, 408
NlaIV	GGNNCC	5 cut(s)	133, 152, 197, 216, 427
OliI	CACNNNNGTG	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	440
Pfl23II	CGTACG	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	113
Ple19I	CGATCG	1 cut(s)	257
PleI	GAGTC	1 cut(s)	380
PluTI	GGCGCC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	5 cut(s)	133, 152, 197, 216, 427
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	6 cut(s)	113, 131, 151, 195, 196, 214
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	203
PvuI	CGATCG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	48, 105
RsaNI	GTAC	2 cut(s)	47, 104
RseI	CAYNNNNRTG	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	3 cut(s)	203, 254, 408
Sau96I	GGNCC	6 cut(s)	113, 131, 151, 195, 196, 214
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	3 cut(s)	149, 212, 236
SduI	GDGCHC	2 cut(s)	199, 354
SetI	ASST	9 cut(s)	35, 228, 276, 294, 354, 407, 465, 568, 576
SfaNI	GCATC	1 cut(s)	168
SfoI	GGCGCC	1 cut(s)	427
SinI	GGWCC	3 cut(s)	131, 151, 214
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	584
SsiI	CCGC	5 cut(s)	94, 111, 231, 366, 503
SspDI	GGCGCC	1 cut(s)	425
SspMI	CTAG	2 cut(s)	489, 563
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	147, 210, 234
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	88, 108, 386, 448
TaqI	TCGA	2 cut(s)	162, 443
TasI	AATT	1 cut(s)	584
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	383, 391
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	2 cut(s)	383, 391
VpaK11BI	GGWCC	3 cut(s)	131, 151, 214
XapI	RAATTY	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	2 cut(s)	489, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.