Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

53520077 .. 53520784

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG392700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCGTCCTCTCTTCACCCAAACCCGACCACCTTCCTCAAACCCGTACCCAGACCATTCACAACCACGCCCACCCCCACCCCCACCGTCGTCCGCGTTCCCGTACGGTGCGGCCCACGCGACAAGCGTGGACCCTTGGTCAAAGGCCGGGTCCTCAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGGACCCATCCCACCTCCCCGCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCCGACCTCGTCGCCGCCCTCAAAGAGCTTCTACGGCAGGATCAGTGCCACCTGGCCCTCCAGGCCTTCTCCGCCTTCCGATCGGAATACCAACCCGACCTGTCCGTCTACGCCGAGGTGGCTTTGGCGCTCGCCAGAAGTGGGATGGTGGAGGAGATAGACACTCTGGTTTGTGAGCTCGAAAAGGAGAGCGGAGGAGTCCAGTGGGACAGTGATAAGGGGCTGATAAGGTTGATCAAGGCCGTCATTGGGGCCGACCGGAGGGAATCGACGGTCAGGATTTACGAGATGCTGAAGAGGAATGGATGGGGGTCTAGTAGTTTTAAAGCGGATGAGTATATGGTTAGGGTGTTGAGCAAGGGATTGAGGAGGCTTGGTGAGGCTGAACTAGCTGATGAGGTTGATGTCAAATTTGGTCCACAGCTGTTATTTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.02

Weight (kDa)

9.3

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	459
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	2 cut(s)	96, 120
AciI	CCGC	8 cut(s)	94, 111, 231, 256, 282, 339, 459, 596
AclWI	GGATC	2 cut(s)	198, 315
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	48, 105
AfiI	CCNNNNNNNGG	6 cut(s)	192, 193, 235, 408, 516, 528
AgsI	TTSAA	1 cut(s)	701
AhdI	GACNNNNNGTC	1 cut(s)	137
AjnI	CCWGG	3 cut(s)	234, 318, 327
AluBI	AGCT	4 cut(s)	295, 445, 659, 691
AluI	AGCT	4 cut(s)	295, 445, 659, 691
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	198, 315
AoxI	GGCC	8 cut(s)	112, 145, 165, 195, 321, 330, 507, 519
ApaI	GGGCCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	677
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	9 cut(s)	113, 131, 151, 195, 196, 214, 322, 519, 683
AsuC2I	CCSGG	2 cut(s)	149, 212
AsuHPI	GGTGA	2 cut(s)	8, 656
AvaII	GGWCC	4 cut(s)	131, 151, 214, 683
BaeGI	GKGCMC	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	199, 447
Bbv12I	GWGCWC	1 cut(s)	447
BbvCI	CCTCAGC	1 cut(s)	155
BccI	CCATC	4 cut(s)	176, 226, 406, 567
BceAI	ACGGC	3 cut(s)	161, 317, 494
BciT130I	CCWGG	3 cut(s)	236, 320, 329
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	2 cut(s)	149, 212
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	582, 656
BfoI	RGCGCY	1 cut(s)	398
BglI	GCCNNNNNGGC	2 cut(s)	329, 386
BisI	GCNGC	2 cut(s)	112, 282
BlsI	GCNGC	2 cut(s)	113, 283
Bme1390I	CCNGG	5 cut(s)	149, 212, 236, 320, 329
Bme18I	GGWCC	4 cut(s)	131, 151, 214, 683
BmeRI	GACNNNNNGTC	1 cut(s)	137
BmgT120I	GGNCC	9 cut(s)	113, 131, 151, 195, 196, 214, 322, 519, 683
BmiI	GGNNCC	5 cut(s)	133, 152, 197, 216, 520
BmrFI	CCNGG	5 cut(s)	149, 212, 236, 320, 329
BmsI	GCATC	2 cut(s)	168, 546
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	149, 212
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	135, 234, 381
BsaWI	WCCGGW	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	6 cut(s)	192, 193, 235, 408, 516, 528
Bse1I	ACTGG	1 cut(s)	469
BseBI	CCWGG	3 cut(s)	236, 320, 329
BseDI	CCNNGG	3 cut(s)	135, 234, 381
BseGI	GGATG	5 cut(s)	168, 218, 417, 578, 604
BseLI	CCNNNNNNNGG	6 cut(s)	192, 193, 235, 408, 516, 528
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	3 cut(s)	434, 477, 649
BseSI	GKGCMC	1 cut(s)	199
Bsh1236I	CGCG	2 cut(s)	96, 120
Bsh1285I	CGRYCG	2 cut(s)	350, 526
BshFI	GGCC	8 cut(s)	114, 147, 167, 197, 323, 332, 509, 521
BsiEI	CGRYCG	2 cut(s)	350, 526
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	148, 212, 526
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	6 cut(s)	192, 193, 235, 408, 516, 528
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	8 cut(s)	114, 147, 167, 197, 323, 332, 509, 521
Bso31I	GGTCTC	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	199, 447
Bsp143I	GATC	4 cut(s)	203, 307, 347, 501
BspACI	CCGC	8 cut(s)	94, 111, 231, 256, 282, 339, 459, 596
BspANI	GGCC	8 cut(s)	114, 147, 167, 197, 323, 332, 509, 521
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	96, 120
BspLI	GGNNCC	5 cut(s)	133, 152, 197, 216, 520
BspPI	GGATC	2 cut(s)	198, 315
BspTNI	GGTCTC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	3 cut(s)	135, 234, 381
BssMI	GATC	4 cut(s)	203, 307, 347, 501
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	236, 320, 329
Bst4CI	ACNGT	4 cut(s)	88, 108, 479, 541
Bst6I	CTCTTC	2 cut(s)	18, 557
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	168, 218, 417, 578, 604
BstFNI	CGCG	2 cut(s)	96, 120
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	4 cut(s)	206, 310, 350, 504
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	4 cut(s)	203, 307, 347, 501
BstMCI	CGRYCG	2 cut(s)	350, 526
BstMWI	GCNNNNNNNGC	8 cut(s)	117, 173, 182, 301, 329, 338, 386, 656
BstNI	CCWGG	3 cut(s)	236, 320, 329
BstSCI	CCNGG	5 cut(s)	147, 210, 234, 318, 327
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	2 cut(s)	96, 120
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	8 cut(s)	114, 147, 167, 197, 323, 332, 509, 521
BtsCI	GGATG	5 cut(s)	168, 218, 417, 578, 604
BtsIMutI	CAGTG	3 cut(s)	317, 476, 484
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	9 cut(s)	113, 131, 151, 195, 196, 214, 322, 519, 683
Csp6I	GTAC	2 cut(s)	47, 104
CviQI	GTAC	2 cut(s)	47, 104
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	4 cut(s)	205, 309, 349, 503
DpnII	GATC	4 cut(s)	203, 307, 347, 501
DraI	TTTAAA	1 cut(s)	592
DrdI	GACNNNNNNGTC	1 cut(s)	371
DriI	GACNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	371
Eam1104I	CTCTTC	2 cut(s)	18, 557
Eam1105I	GACNNNNNGTC	1 cut(s)	137
EarI	CTCTTC	2 cut(s)	18, 557
EciI	GGCGGA	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	2 cut(s)	199, 447
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	4 cut(s)	131, 151, 214, 683
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	3 cut(s)	234, 318, 327
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	199, 447
ErhI	CCWWGG	1 cut(s)	135
FaiI	YATR	2 cut(s)	606, 608
FaqI	GGGAC	1 cut(s)	488
FauI	CCCGC	2 cut(s)	238, 263
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	112, 282
FokI	GGATG	5 cut(s)	155, 205, 424, 585, 611
FriOI	GRGCYC	2 cut(s)	199, 447
Fsp4HI	GCNGC	2 cut(s)	112, 282
FspBI	CTAG	2 cut(s)	582, 656
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	2 cut(s)	112, 282
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	8 cut(s)	114, 147, 167, 197, 323, 332, 509, 521
HapII	CCGG	3 cut(s)	148, 212, 526
HhaI	GCGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	2 cut(s)	465, 533
HpaII	CCGG	3 cut(s)	148, 212, 526
HphI	GGTGA	2 cut(s)	8, 656
Hpy166II	GTNNAC	3 cut(s)	131, 376, 686
Hpy188I	TCNGA	4 cut(s)	208, 271, 347, 352
Hpy188III	TCNNGA	2 cut(s)	544, 705
Hpy8I	GTNNAC	3 cut(s)	131, 376, 686
Hpy99I	CGWCG	3 cut(s)	92, 281, 541
HpyAV	CCTTC	3 cut(s)	43, 343, 352
HpyCH4III	ACNGT	4 cut(s)	88, 108, 479, 541
HpyF10VI	GCNNNNNNNGC	8 cut(s)	117, 173, 182, 301, 329, 338, 386, 656
HpyF3I	CTNAG	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	203, 307, 347, 501
LweI	GCATC	2 cut(s)	168, 546
MaeI	CTAG	2 cut(s)	582, 656
MalI	GATC	4 cut(s)	205, 309, 349, 503
MbiI	CCGCTC	1 cut(s)	459
MboI	GATC	4 cut(s)	203, 307, 347, 501
MboII	GAAGA	2 cut(s)	5, 574
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	199, 447
MluCI	AATT	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	474
MmeI	TCCRAC	2 cut(s)	231, 294
MseI	TTAA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	691
MspI	CCGG	3 cut(s)	148, 212, 526
MspR9I	CCNGG	5 cut(s)	149, 212, 236, 320, 329
MvaI	CCWGG	3 cut(s)	236, 320, 329
MvnI	CGCG	2 cut(s)	96, 120
MwoI	GCNNNNNNNGC	8 cut(s)	117, 173, 182, 301, 329, 338, 386, 656
NciI	CCSGG	2 cut(s)	149, 212
NdeII	GATC	4 cut(s)	203, 307, 347, 501
NlaIV	GGNNCC	5 cut(s)	133, 152, 197, 216, 520
NmeAIII	GCCGAG	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	533
Pfl23II	CGTACG	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	113, 283
Ple19I	CGATCG	1 cut(s)	350
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	234, 318, 327
PspGI	CCWGG	3 cut(s)	234, 318, 327
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	5 cut(s)	133, 152, 197, 216, 520
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	9 cut(s)	113, 131, 151, 195, 196, 214, 322, 519, 683
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	275
PvuI	CGATCG	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	691
RsaI	GTAC	2 cut(s)	48, 105
RsaNI	GTAC	2 cut(s)	47, 104
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	2 cut(s)	112, 282
Sau3AI	GATC	4 cut(s)	203, 307, 347, 501
Sau96I	GGNCC	9 cut(s)	113, 131, 151, 195, 196, 214, 322, 519, 683
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	5 cut(s)	149, 212, 236, 320, 329
SduI	GDGCHC	2 cut(s)	199, 447
SfaNI	GCATC	2 cut(s)	168, 546
SfiI	GGCCNNNNNGGCC	1 cut(s)	329
SinI	GGWCC	4 cut(s)	131, 151, 214, 683
Sse9I	AATT	1 cut(s)	677
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	8 cut(s)	94, 111, 231, 256, 282, 339, 459, 596
SspMI	CTAG	2 cut(s)	582, 656
SstI	GAGCTC	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	5 cut(s)	147, 210, 234, 318, 327
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	88, 108, 479, 541
TaqI	TCGA	3 cut(s)	162, 447, 536
TasI	AATT	1 cut(s)	677
TauI	GCSGC	2 cut(s)	114, 284
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	3 cut(s)	317, 476, 484
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	3 cut(s)	317, 476, 484
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	4 cut(s)	131, 151, 214, 683
XapI	RAATTY	1 cut(s)	677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	2 cut(s)	582, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.