AT3G47380

21 kDa protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004281
Physical Location & Seq
Forward (+)
17457614 .. 17458599
986 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47380.1

Sequence Viewer

Length: 609 bp
ATGGCAAAACAAATATTCTACACTCTCTTTCTATTCCTCTTATCCACGGCTATTCTCACGGCGTCGTCCTCCGCCCCCAGAGCCGCAATAACTTCAAAACGTGCTATAAACTTCATACAAGCCTCTTGCAAAGCCACAACATACCCAACCGTATGCGTCAACTCTCTCACCGGTTACGCCAACTCCATCCAAACAAGCCCTCGACGTCTAGCCGAGACCGCACTCAATGTGACCGTGACTCAGGCCCAGTCCACCAAGGTCTTCGTCTGGCGCTTGGGGCGTTTCACTAGTCTCAAGAAACGAGAGATTCAAGCCGTTAAGGACTGCATCGAGGAGATCCATGATGCCGTTGACCGTTTGACCATGTCGATCCATGAAGTGAAGATGTGTGGTAGTGCTAAAGGTCGTGACCAGTTTTGGTTCCACATGAGCAATGCTCAAACGTGGACCAGCGCTGCTTTGACTAATGCAAACACTTGCTCCGATGGGTTTGCGGGTCGGGTCATGGATGGGCGGGTAAAGAACTCAGTAAGGGCACGGATCTTGAATTTGGGAAGAGGAACTAGTAACGCTTTAGCCTTGATCAATGCTTTCGCTAAAAAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0008150 GO:0009987 GO:0030234 GO:0043086 GO:0044092 GO:0046910 GO:0048046 GO:0050790 GO:0065007 GO:0065009 GO:0071554 GO:0071669 GO:0098772
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

202

Amino Acids

22.23

Weight (kDa)

10.13

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 37 - 194 3.6e-37 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 208
AciI CCGC 5 cut(s) 72, 84, 219, 494, 514
AclWI GGATC 3 cut(s) 331, 364, 548
AcsI RAATTY 1 cut(s) 547
AcyI GRCGYC 2 cut(s) 62, 205
AfeI AGCGCT 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 170
AgsI TTSAA 3 cut(s) 96, 311, 547
AhlI ACTAGT 2 cut(s) 287, 563
Alw26I GTCTC 2 cut(s) 209, 296
AlwI GGATC 3 cut(s) 331, 364, 548
Aor51HI AGCGCT 1 cut(s) 454
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 547
AsiGI ACCGGT 1 cut(s) 170
AspLEI GCGC 2 cut(s) 273, 455
AspS9I GGNCC 2 cut(s) 244, 447
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 442
BccI CCATC 3 cut(s) 194, 479, 503
BceAI ACGGC 4 cut(s) 63, 75, 299, 332
BcgI CGANNNNNNTGC 2 cut(s) 473, 507
BclI TGATCA 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 209, 296
BcuI ACTAGT 2 cut(s) 287, 563
BfaI CTAG 3 cut(s) 209, 288, 564
BfoI RGCGCY 2 cut(s) 274, 456
BisI GCNGC 2 cut(s) 84, 456
BlsI GCNGC 2 cut(s) 85, 457
Bme18I GGWCC 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 244, 447
BmiI GGNNCC 1 cut(s) 422
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 334, 336
BmuI ACTGGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpuEI CTTGAG 1 cut(s) 278
BsaHI GRCGYC 2 cut(s) 62, 205
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 45, 255
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 464, 494
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 247, 412
Bse3DI GCAATG 1 cut(s) 439
BseDI CCNNGG 2 cut(s) 45, 255
BseGI GGATG 2 cut(s) 186, 514
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 254, 540
BseNI ACTGG 2 cut(s) 247, 412
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 1 cut(s) 245
BshTI ACCGGT 1 cut(s) 170
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 209, 296
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 4 cut(s) 336, 369, 540, 582
BspACI CCGC 5 cut(s) 72, 84, 219, 494, 514
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 253, 539
BspLI GGNNCC 1 cut(s) 422
BspPI GGATC 3 cut(s) 331, 364, 548
BspTNI GGTCTC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 2 cut(s) 247, 412
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 45, 255
BssMI GATC 4 cut(s) 336, 369, 540, 582
BssNI GRCGYC 2 cut(s) 62, 205
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 3 cut(s) 151, 235, 356
Bst6I CTCTTC 1 cut(s) 550
BstACI GRCGYC 2 cut(s) 62, 205
BstDEI CTNAG 2 cut(s) 240, 526
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 186, 514
BstH2I RGCGCY 2 cut(s) 274, 456
BstHHI GCGC 2 cut(s) 273, 455
BstKTI GATC 4 cut(s) 339, 372, 543, 585
BstMAI GTCTC 2 cut(s) 209, 296
BstMBI GATC 4 cut(s) 336, 369, 540, 582
BstMWI GCNNNNNNNGC 3 cut(s) 80, 218, 277
BstSLI GKGCMC 1 cut(s) 538
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 2 cut(s) 336, 540
BstYI RGATCY 2 cut(s) 336, 540
BsuRI GGCC 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 186, 514
CfoI GCGC 2 cut(s) 273, 455
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 244, 447
CseI GACGC 2 cut(s) 51, 145
CspAI ACCGGT 1 cut(s) 170
CviAII CATG 5 cut(s) 341, 364, 374, 427, 505
CviJI RGCY 9 cut(s) 50, 83, 122, 134, 198, 212, 245, 314, 578
CviKI_1 RGCY 9 cut(s) 50, 83, 122, 134, 198, 212, 245, 314, 578
DdeI CTNAG 2 cut(s) 240, 526
DpnI GATC 4 cut(s) 338, 371, 542, 584
DpnII GATC 4 cut(s) 336, 369, 540, 582
Eam1104I CTCTTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 550
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 447
Eco47III AGCGCT 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 5 cut(s) 344, 367, 377, 430, 508
FaiI YATR 9 cut(s) 107, 116, 142, 154, 342, 365, 375, 428, 506
FatI CATG 5 cut(s) 340, 363, 373, 426, 504
FauI CCCGC 2 cut(s) 487, 507
FbaI TGATCA 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 84, 456
FokI GGATG 2 cut(s) 173, 521
Fsp4HI GCNGC 2 cut(s) 84, 456
FspBI CTAG 3 cut(s) 209, 288, 564
GlaI GCGC 2 cut(s) 272, 454
GluI GCNGC 2 cut(s) 84, 456
HaeII RGCGCY 2 cut(s) 274, 456
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 171
HgaI GACGC 2 cut(s) 51, 145
HhaI GCGC 2 cut(s) 273, 455
Hin1I GRCGYC 2 cut(s) 62, 205
Hin1II CATG 5 cut(s) 344, 367, 377, 430, 508
Hin6I GCGC 2 cut(s) 271, 453
HinP1I GCGC 2 cut(s) 271, 453
HincII GTYRAC 2 cut(s) 160, 352
HindII GTYRAC 2 cut(s) 160, 352
HinfI GANTC 2 cut(s) 238, 307
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 4 cut(s) 160, 252, 352, 447
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 3 cut(s) 295, 407, 544
Hpy8I GTNNAC 4 cut(s) 160, 252, 352, 447
Hpy99I CGWCG 2 cut(s) 67, 207
HpyCH4III ACNGT 3 cut(s) 151, 235, 356
HpyCH4IV ACGT 3 cut(s) 100, 205, 443
HpyCH4V TGCA 3 cut(s) 129, 327, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 218, 277
HpyF3I CTNAG 2 cut(s) 240, 526
HpySE526I ACGT 3 cut(s) 100, 205, 443
Hsp92I GRCGYC 2 cut(s) 62, 205
Hsp92II CATG 5 cut(s) 344, 367, 377, 430, 508
HspAI GCGC 2 cut(s) 271, 453
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 4 cut(s) 336, 369, 540, 582
LmnI GCTCC 1 cut(s) 485
LpnPI CCDG 7 cut(s) 91, 184, 227, 253, 260, 425, 463
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 2 cut(s) 334, 336
MaeI CTAG 3 cut(s) 209, 288, 564
MaeII ACGT 3 cut(s) 100, 205, 443
MaeIII GTNAC 5 cut(s) 173, 229, 235, 407, 566
MalI GATC 4 cut(s) 338, 371, 542, 584
MboI GATC 4 cut(s) 336, 369, 540, 582
MboII GAAGA 3 cut(s) 253, 394, 567
MflI RGATCY 2 cut(s) 336, 540
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 1 cut(s) 547
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 6 cut(s) 47, 79, 133, 210, 325, 551
MseI TTAA 1 cut(s) 318
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 80, 218, 277
NdeII GATC 4 cut(s) 336, 369, 540, 582
NlaIII CATG 5 cut(s) 344, 367, 377, 430, 508
NlaIV GGNNCC 1 cut(s) 422
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 3 cut(s) 229, 235, 407
PfeI GAWTC 1 cut(s) 307
PflFI GACNNNGTC 1 cut(s) 364
PinAI ACCGGT 1 cut(s) 170
PkrI GCNGC 2 cut(s) 85, 457
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 2 cut(s) 244, 447
PsuI RGATCY 2 cut(s) 336, 540
PsyI GACNNNGTC 1 cut(s) 364
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 84, 456
Sau3AI GATC 4 cut(s) 336, 369, 540, 582
Sau96I GGNCC 2 cut(s) 244, 447
SchI GAGTC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 538
SetI ASST 5 cut(s) 103, 208, 261, 406, 446
SfaNI GCATC 2 cut(s) 334, 336
SinI GGWCC 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SpeI ACTAGT 2 cut(s) 287, 563
Sse9I AATT 1 cut(s) 547
SsiI CCGC 5 cut(s) 72, 84, 219, 494, 514
SspI AATATT 1 cut(s) 15
SspMI CTAG 3 cut(s) 209, 288, 564
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 3 cut(s) 151, 235, 356
TaiI ACGT 3 cut(s) 103, 208, 446
TaqI TCGA 3 cut(s) 202, 330, 368
TasI AATT 1 cut(s) 547
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 3 cut(s) 229, 235, 407
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 3 cut(s) 229, 235, 407
TspDTI ATGAA 2 cut(s) 103, 390
TspGWI ACGGA 1 cut(s) 553
Tth111I GACNNNGTC 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 447
XapI RAATTY 1 cut(s) 547
XspI CTAG 3 cut(s) 209, 288, 564
ZraI GACGTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.