AT5G62360

Invertase pectin methylesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004281
Physical Location & Seq
Forward (+)
25040540 .. 25041504
965 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62360.1

Sequence Viewer

Length: 612 bp
ATGGGTGAATCTTTTAGATTATTCAATCATCATCACTTCCTCACAACTTTTCTCATAATCATAGCCATGCTCAAATTGGTTCATACAACAACAACAACAACTACAACAACAACAACAAACACCGAGTTCGTAAAATCATCATGCACTTTCACAACGTACCCAAGACTCTGTTTCTCTTCACTCTCAACTCATGCTAGTCTCATCCAAACAAGCCCCAAGCTCATGGCTCATGCGGCTCTCAACATCACATTAGCCTCGGCTAAAGTAACTTCAGCAATGATGGTGCGTCTCTCGAATAGTCGGCTCAAGCCTAAAGAAGTCTCGGCCATGAGAGACTGCGTCGAGGAGTTAGGTGACACGTTGGAGGAGCTTAGGAAATCGATTGGTGAGATGTGTCAGCTAAGTGGCTCGAACTATGAAGTTTACATAAGCGATATACAGACTTGGGTCAGTGCGGCTTTGACAGATGTGAACACATGTACTGACGGATTTGAAGGAGAAGATATGGACGGGAAGGTTAAGGTTTTGGTTAGAGGGAGGATTTTGGTTATTGCTCATTTAACAAGTAATGCTTTAGCTTTGATTAATCACTTTGCTTCTATTCATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0030234 GO:0043086 GO:0044092 GO:0050790 GO:0050896 GO:0065007 GO:0065009 GO:0098772
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

203

Amino Acids

22.34

Weight (kDa)

6.74

Isoelectric Point (pI)

18.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 43 - 194 6.9e-37 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 455
AcoI YGGCCR 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 2 cut(s) 158, 481
AflIII ACRYGT 2 cut(s) 357, 476
AgsI TTSAA 2 cut(s) 25, 494
AluBI AGCT 4 cut(s) 220, 370, 400, 578
AluI AGCT 4 cut(s) 220, 370, 400, 578
Alw26I GTCTC 4 cut(s) 203, 293, 325, 327
AoxI GGCC 1 cut(s) 324
AseI ATTAAT 1 cut(s) 585
AsuHPI GGTGA 3 cut(s) 17, 365, 398
BccI CCATC 1 cut(s) 274
BcoDI GTCTC 4 cut(s) 203, 293, 325, 327
BfaI CTAG 1 cut(s) 195
BisI GCNGC 2 cut(s) 234, 456
BlsI GCNGC 2 cut(s) 235, 457
BoxI GACNNNNGTC 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 359, 380
BshFI GGCC 1 cut(s) 326
BshVI ATCGAT 1 cut(s) 380
BsmAI GTCTC 4 cut(s) 203, 293, 325, 327
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 326
BspACI CCGC 2 cut(s) 233, 455
BspANI GGCC 1 cut(s) 326
BspDI ATCGAT 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 371, 401
BstF5I GGATG 1 cut(s) 201
BstMAI GTCTC 4 cut(s) 203, 293, 325, 327
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 480
BstPAI GACNNNNGTC 1 cut(s) 446
BstXI CCANNNNNNTGG 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 380
BsuRI GGCC 1 cut(s) 326
BsuTUI ATCGAT 1 cut(s) 380
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 457
ClaI ATCGAT 1 cut(s) 380
CseI GACGC 2 cut(s) 275, 328
Csp6I GTAC 2 cut(s) 157, 480
CviAII CATG 8 cut(s) 67, 141, 191, 223, 230, 328, 477, 605
CviQI GTAC 2 cut(s) 157, 480
DdeI CTNAG 2 cut(s) 371, 401
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 8 cut(s) 70, 144, 194, 226, 233, 331, 480, 608
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FatI CATG 8 cut(s) 66, 140, 190, 222, 229, 327, 476, 604
Fnu4HI GCNGC 2 cut(s) 234, 456
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 234, 456
FspBI CTAG 1 cut(s) 195
GluI GCNGC 2 cut(s) 234, 456
HaeIII GGCC 1 cut(s) 326
HgaI GACGC 2 cut(s) 275, 328
Hin1II CATG 8 cut(s) 70, 144, 194, 226, 233, 331, 480, 608
HinfI GANTC 2 cut(s) 8, 165
HphI GGTGA 3 cut(s) 17, 365, 398
Hpy166II GTNNAC 2 cut(s) 424, 472
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 2 cut(s) 424, 472
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 488, 508
HpyCH4IV ACGT 2 cut(s) 155, 359
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 371, 401
HpySE526I ACGT 2 cut(s) 155, 359
Hsp92II CATG 8 cut(s) 70, 144, 194, 226, 233, 331, 480, 608
LmnI GCTCC 1 cut(s) 367
MaeI CTAG 1 cut(s) 195
MaeII ACGT 2 cut(s) 155, 359
MaeIII GTNAC 2 cut(s) 265, 353
MboII GAAGA 2 cut(s) 168, 512
MluCI AATT 1 cut(s) 74
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 6 cut(s) 50, 265, 337, 358, 527, 531
MseI TTAA 3 cut(s) 519, 560, 585
MslI CAYNNNNRTG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 233
NlaIII CATG 8 cut(s) 70, 144, 194, 226, 233, 331, 480, 608
NmeAIII GCCGAG 2 cut(s) 236, 302
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 480
PciI ACATGT 1 cut(s) 476
PfeI GAWTC 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 235, 457
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PscI ACATGT 1 cut(s) 476
PshAI GACNNNNGTC 1 cut(s) 446
PshBI ATTAAT 1 cut(s) 585
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 2 cut(s) 158, 481
RsaNI GTAC 2 cut(s) 157, 480
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 3 cut(s) 519, 560, 585
SatI GCNGC 2 cut(s) 234, 456
SchI GAGTC 1 cut(s) 159
SetI ASST 9 cut(s) 158, 222, 355, 362, 372, 402, 519, 525, 580
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 74
SsiI CCGC 2 cut(s) 233, 455
SspMI CTAG 1 cut(s) 195
TaiI ACGT 2 cut(s) 158, 362
TaqI TCGA 4 cut(s) 293, 342, 380, 410
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 479
TauI GCSGC 2 cut(s) 236, 458
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 3 cut(s) 519, 560, 585
Tru9I TTAA 3 cut(s) 519, 560, 585
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 3 cut(s) 71, 432, 593
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 338
VspI ATTAAT 1 cut(s) 585
XceI RCATGY 1 cut(s) 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.