Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8519951.1

Orthogroup ID

OG0004281

Physical Location & Seq

Genomic Coordinates Forward (+)

537 .. 1022

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8519951.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgaaaacatcttgtagtgcaacaagatacccaaaactttgtcttacttcccttgcaagccaagcaactgcaatccaaacaagtccgaaactcatggcggctgcagcccttagagtgacactttcctctgctaaatcaacctctaccatgatgttgagtctctcccacagccacggaatgaagcctagagaagttgctgccatgagggactgcgttgaagtgttgagcgattctgtggacgagcttcagaggtcaatttccgagatggctaactttaagagctcggattttgagatgatgataagtgatgtacaaacttgggttagcgcggccttaacggatgagagtacctgcacagatgggtttgctggaaatgggttgaacgggaatttgaagactgttgtgagggggaagattgtaaacattgcacaattgactagcaatgccttggccttaatcaacagatacgcctcagttcacggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

161

Amino Acids

17.15

Weight (kDa)

8.4

Isoelectric Point (pI)

21.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47380 AT4G25260 AT5G62330 AT5G62340 AT5G62350 AT5G62360
fragaria_vesca	FvH4_7g27800
malus_domestica	MD00G1105200.v1.1 MD00G1105300.v1.1 MD07G1255400.v1.1 MD07G1255500.v1.1
prunus_persica	Prupe.2G279700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0374671 RchiOBHm_Chr1g0374691
rosa_laevigata	RLG00000026722
rosa_multiflora	Rmu_co8519951.1_g000001 Rmu_sc0003443.1_g000004 Rmu_sc0004947.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283320 Rroxscaffold_4G00283350
rosa_rugosa	Rorug01G0384300 Rorug01G0384300
rosa_samantha	Rh1AG395600 Rh1AG395900 Rh1BG359700 Rh1BG360000 Rh1CG373300 Rh1CG373400 Rh1DG390800 Rh1DG391000
rosa_wichuraiana	Rw1G035080 Rw1G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccII	CGCG	1 cut(s)	329
AciI	CCGC	2 cut(s)	98, 329
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	312, 349
AgsI	TTSAA	3 cut(s)	218, 382, 394
AluBI	AGCT	2 cut(s)	244, 282
AluI	AGCT	2 cut(s)	244, 282
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	330, 450
ApeKI	GCWGC	3 cut(s)	101, 104, 197
ApoI	RAATTY	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	88, 116, 184
BccI	CCATC	2 cut(s)	259, 353
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	186, 438
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	5 cut(s)	99, 102, 105, 198, 330
BlsI	GCNGC	5 cut(s)	100, 103, 106, 199, 331
BpiI	GAAGAC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	172, 447
Bse3DI	GCAATG	2 cut(s)	423, 448
BseDI	CCNNGG	2 cut(s)	172, 447
BseGI	GGATG	1 cut(s)	346
BseMI	GCAATG	2 cut(s)	423, 448
BseMII	CTCAG	1 cut(s)	486
BseXI	GCAGC	3 cut(s)	88, 116, 184
BsgI	GTGCAG	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	332, 452
BsiHKAI	GWGCWC	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	332, 452
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	310
BspACI	CCGC	2 cut(s)	98, 329
BspANI	GGCC	2 cut(s)	332, 452
BspCNI	CTCAG	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	329
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	423, 448
BsrGI	TGTACA	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	172, 447
BssT1I	CCWWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	400, 482
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	110, 472
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	329
BstMAI	GTCTC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 104
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	88, 116, 184
BstV2I	GAAGAC	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	332, 452
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	311, 348
CviAII	CATG	3 cut(s)	94, 148, 202
CviQI	GTAC	2 cut(s)	311, 348
DdeI	CTNAG	2 cut(s)	110, 472
Ecl136II	GAGCTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	97, 151, 205
FaiI	YATR	3 cut(s)	95, 149, 203
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	93, 147, 201
Fnu4HI	GCNGC	5 cut(s)	99, 102, 105, 198, 330
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	5 cut(s)	99, 102, 105, 198, 330
FspBI	CTAG	2 cut(s)	186, 438
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	5 cut(s)	99, 102, 105, 198, 330
HaeIII	GGCC	2 cut(s)	332, 452
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	3 cut(s)	97, 151, 205
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	157, 230
Hpy166II	GTNNAC	3 cut(s)	238, 421, 478
Hpy188I	TCNGA	4 cut(s)	87, 249, 262, 286
Hpy8I	GTNNAC	3 cut(s)	238, 421, 478
HpyCH4III	ACNGT	2 cut(s)	400, 482
HpyCH4V	TGCA	6 cut(s)	20, 56, 71, 104, 354, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 104
HpyF3I	CTNAG	2 cut(s)	110, 472
Hsp92II	CATG	3 cut(s)	97, 151, 205
HspAI	GCGC	1 cut(s)	327
LpnPI	CCDG	2 cut(s)	354, 364
Lsp1109I	GCAGC	3 cut(s)	88, 116, 184
MaeI	CTAG	2 cut(s)	186, 438
MaeIII	GTNAC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	406, 424
MfeI	CAATTG	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	255, 388, 431
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	6 cut(s)	136, 151, 198, 243, 399, 481
MseI	TTAA	4 cut(s)	276, 335, 455, 484
MunI	CAATTG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	62, 104
NlaIII	CATG	3 cut(s)	97, 151, 205
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	100, 103, 106, 199, 331
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	312, 349
RsaNI	GTAC	2 cut(s)	311, 348
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	4 cut(s)	276, 335, 455, 484
SatI	GCNGC	5 cut(s)	99, 102, 105, 198, 330
SchI	GAGTC	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	5 cut(s)	143, 246, 254, 284, 353
SfcI	CTRYAG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	255, 388, 431
SsiI	CCGC	2 cut(s)	98, 329
SspMI	CTAG	2 cut(s)	186, 438
SstI	GAGCTC	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	400, 482
TasI	AATT	3 cut(s)	255, 388, 431
TatI	WGTACW	1 cut(s)	310
TauI	GCSGC	2 cut(s)	101, 332
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	4 cut(s)	276, 335, 455, 484
Tru9I	TTAA	4 cut(s)	276, 335, 455, 484
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	3 cut(s)	101, 104, 197
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	17, 194
TspGWI	ACGGA	2 cut(s)	189, 353
XapI	RAATTY	1 cut(s)	388
XspI	CTAG	2 cut(s)	186, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.