Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004947.1

Orthogroup ID

OG0004281

Physical Location & Seq

Genomic Coordinates Reverse (-)

66989 .. 67585

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004947.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggcctcctcatctttcacatctcttcttatagtactttccattagttgctgcatattctactcaacctcagcagctagagaccttccaccaaaaaccaacactgagttcatgaaaacatcttgtagtgcaacaagatacccaaaactttgtcttacttcccttgcaagccaagcaactgcaatccaaacaagtccgaaactcatggcggctgcagcccttagagtgacactttcctctgctaaatcaacctctaccatgatgttgagtctctcccacagccacggaatgaagcctagagaagttgctgccatgagggactgcgttgaagtgttgagcgattctgtggacgagcttcagaggtcaatttccgagatggctaactttaagagctcggattttgagatgatgataagtgatgtacaaacttgggttagcgcggccttaacggatgagagtacctgcacagatgggtttgctggaaatgggttgaacgggaatttgaagactgttgtgagggggaagattgtaaacattgcacaattgactagcaatgccttggccttaatcaacagatacgcctcagttcacggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

198

Amino Acids

21.14

Weight (kDa)

8.23

Isoelectric Point (pI)

26.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47380 AT4G25260 AT5G62330 AT5G62340 AT5G62350 AT5G62360
fragaria_vesca	FvH4_7g27800
malus_domestica	MD00G1105200.v1.1 MD00G1105300.v1.1 MD07G1255400.v1.1 MD07G1255500.v1.1
prunus_persica	Prupe.2G279700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0374671 RchiOBHm_Chr1g0374691
rosa_laevigata	RLG00000026722
rosa_multiflora	Rmu_co8519951.1_g000001 Rmu_sc0003443.1_g000004 Rmu_sc0004947.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283320 Rroxscaffold_4G00283350
rosa_rugosa	Rorug01G0384300 Rorug01G0384300
rosa_samantha	Rh1AG395600 Rh1AG395900 Rh1BG359700 Rh1BG360000 Rh1CG373300 Rh1CG373400 Rh1DG390800 Rh1DG391000
rosa_wichuraiana	Rw1G035080 Rw1G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AccII	CGCG	1 cut(s)	440
AciI	CCGC	2 cut(s)	209, 440
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	3 cut(s)	36, 423, 460
AgsI	TTSAA	3 cut(s)	329, 493, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	77, 355, 393
AluI	AGCT	3 cut(s)	77, 355, 393
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	75, 275
AoxI	GGCC	3 cut(s)	3, 441, 561
ApeKI	GCWGC	5 cut(s)	51, 74, 212, 215, 308
ApoI	RAATTY	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	395
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	5 cut(s)	38, 86, 199, 227, 295
BccI	CCATC	2 cut(s)	370, 464
BcoDI	GTCTC	2 cut(s)	75, 275
BfaI	CTAG	3 cut(s)	78, 297, 549
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	470
BisI	GCNGC	7 cut(s)	52, 75, 210, 213, 216, 309, 441
BlsI	GCNGC	7 cut(s)	53, 76, 211, 214, 217, 310, 442
BmcAI	AGTACT	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	283, 558
Bse3DI	GCAATG	2 cut(s)	534, 559
BseDI	CCNNGG	2 cut(s)	283, 558
BseGI	GGATG	1 cut(s)	457
BseMI	GCAATG	2 cut(s)	534, 559
BseMII	CTCAG	3 cut(s)	84, 96, 597
BseXI	GCAGC	5 cut(s)	38, 86, 199, 227, 295
BsgI	GTGCAG	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	3 cut(s)	5, 443, 563
BsiHKAI	GWGCWC	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	332
BsmAI	GTCTC	2 cut(s)	75, 275
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	3 cut(s)	5, 443, 563
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	421
BspACI	CCGC	2 cut(s)	209, 440
BspANI	GGCC	3 cut(s)	5, 443, 563
BspCNI	CTCAG	3 cut(s)	83, 97, 596
BspFNI	CGCG	1 cut(s)	440
BspHI	TCATGA	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	534, 559
BsrGI	TGTACA	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	283, 558
BssT1I	CCWWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	511, 593
Bst6I	CTCTTC	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	421
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	4 cut(s)	70, 105, 221, 583
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	440
BstMAI	GTCTC	2 cut(s)	75, 275
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 215
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	5 cut(s)	38, 86, 199, 227, 295
BstV2I	GAAGAC	1 cut(s)	512
BsuRI	GGCC	3 cut(s)	5, 443, 563
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	169
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	1 cut(s)	440
Csp6I	GTAC	3 cut(s)	35, 422, 459
CviAII	CATG	4 cut(s)	112, 205, 259, 313
CviQI	GTAC	3 cut(s)	35, 422, 459
DdeI	CTNAG	4 cut(s)	70, 105, 221, 583
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	395
Eco31I	GGTCTC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	4 cut(s)	115, 208, 262, 316
FaiI	YATR	6 cut(s)	32, 56, 113, 206, 260, 314
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	4 cut(s)	111, 204, 258, 312
Fnu4HI	GCNGC	7 cut(s)	52, 75, 210, 213, 216, 309, 441
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	7 cut(s)	52, 75, 210, 213, 216, 309, 441
FspBI	CTAG	3 cut(s)	78, 297, 549
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	7 cut(s)	52, 75, 210, 213, 216, 309, 441
HaeIII	GGCC	3 cut(s)	5, 443, 563
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	4 cut(s)	115, 208, 262, 316
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	2 cut(s)	268, 341
Hpy166II	GTNNAC	3 cut(s)	349, 532, 589
Hpy188I	TCNGA	4 cut(s)	198, 360, 373, 397
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	3 cut(s)	349, 532, 589
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	511, 593
HpyCH4V	TGCA	7 cut(s)	54, 131, 167, 182, 215, 465, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 215
HpyF3I	CTNAG	4 cut(s)	70, 105, 221, 583
Hsp92II	CATG	4 cut(s)	115, 208, 262, 316
HspAI	GCGC	1 cut(s)	438
LpnPI	CCDG	2 cut(s)	465, 475
Lsp1109I	GCAGC	5 cut(s)	38, 86, 199, 227, 295
MaeI	CTAG	3 cut(s)	78, 297, 549
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	3 cut(s)	17, 517, 535
MfeI	CAATTG	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	3 cut(s)	366, 499, 542
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	9 cut(s)	16, 19, 79, 247, 262, 309, 354, 510, 592
MseI	TTAA	4 cut(s)	387, 446, 566, 595
MunI	CAATTG	1 cut(s)	542
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	173, 215
NlaIII	CATG	4 cut(s)	115, 208, 262, 316
NmuCI	GTSAC	1 cut(s)	226
PagI	TCATGA	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	7 cut(s)	53, 76, 211, 214, 217, 310, 442
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	217
RsaI	GTAC	3 cut(s)	36, 423, 460
RsaNI	GTAC	3 cut(s)	35, 422, 459
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	4 cut(s)	387, 446, 566, 595
SatI	GCNGC	7 cut(s)	52, 75, 210, 213, 216, 309, 441
ScaI	AGTACT	1 cut(s)	36
SchI	GAGTC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	8 cut(s)	71, 79, 87, 254, 357, 365, 395, 464
SfcI	CTRYAG	1 cut(s)	213
Sse9I	AATT	3 cut(s)	366, 499, 542
SsiI	CCGC	2 cut(s)	209, 440
SspMI	CTAG	3 cut(s)	78, 297, 549
SstI	GAGCTC	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	511, 593
TasI	AATT	3 cut(s)	366, 499, 542
TatI	WGTACW	2 cut(s)	34, 421
TauI	GCSGC	2 cut(s)	212, 443
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	4 cut(s)	387, 446, 566, 595
Tru9I	TTAA	4 cut(s)	387, 446, 566, 595
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	5 cut(s)	51, 74, 212, 215, 308
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	100, 128, 305
TspGWI	ACGGA	2 cut(s)	300, 464
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	499
XspI	CTAG	3 cut(s)	78, 297, 549
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.