Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004281

Physical Location & Seq

Genomic Coordinates Reverse (-)

27936617 .. 27937883

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G279700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGTCTTCTTCATCTTCTACACATTTTGCCACATGTTTTCTCACAGCACTTTCCATTAGTTTCTGCATAATCTCCTCAACCTCAGCAGCCAGAGACCTTGCACCAAAAACCAACACTGAATTCATCAAAACATCTTGCAGTGCAACAACCTACCCTAAACTCTGCCTCACCTCTCTCTCAAGCCATGCAAGCACAATCCAAACAAGTCCTAAGCTCATGGCTGGTGCAGCCCTTAATGTGACACTTTCCTCTGCCAAATCCACCTCTGCCGTGATGCTAAAACTCTCCCAAAGCCATGGCTTGAAGCCTAAAGAAGTTGGTGCCATGAGAGACTGCCTCGAAGAGTTAAGTGACTCGGTGGACGAGCTCCAGAGTTCTATAGCTGAGATGGGTAACTTCAAAAGCTATGATTTTCAGCTCATGATAAGTGATGTCCAAACTTGGGTTAGTGCTGCTTTGACAGATGAGAACACATGTTCTGAGGGGTTTGGTGGAAATGGGATGAATGGGAATTTGAAGACTGCTGTGAGAGGCCGGATTGTGAATATAGCACAATTGACTAGCAATGCCTTGGCTTTGATCAACCGATACGCCTCTGTTCATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

204

Amino Acids

21.45

Weight (kDa)

6.41

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47380 AT4G25260 AT5G62330 AT5G62340 AT5G62350 AT5G62360
fragaria_vesca	FvH4_7g27800
malus_domestica	MD00G1105200.v1.1 MD00G1105300.v1.1 MD07G1255400.v1.1 MD07G1255500.v1.1
prunus_persica	Prupe.2G279700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0374671 RchiOBHm_Chr1g0374691
rosa_laevigata	RLG00000026722
rosa_multiflora	Rmu_co8519951.1_g000001 Rmu_sc0003443.1_g000004 Rmu_sc0004947.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283320 Rroxscaffold_4G00283350
rosa_rugosa	Rorug01G0384300 Rorug01G0384300
rosa_samantha	Rh1AG395600 Rh1AG395900 Rh1BG359700 Rh1BG360000 Rh1CG373300 Rh1CG373400 Rh1DG390800 Rh1DG391000
rosa_wichuraiana	Rw1G035080 Rw1G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	122, 514
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	2 cut(s)	35, 476
AgsI	TTSAA	3 cut(s)	307, 403, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	5 cut(s)	217, 370, 386, 408, 421
AluI	AGCT	5 cut(s)	217, 370, 386, 408, 421
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	90, 327
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	3 cut(s)	89, 230, 455
ApoI	RAATTY	2 cut(s)	122, 514
AsuHPI	GGTGA	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	85
BbvI	GCAGC	3 cut(s)	101, 242, 442
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	582
BcoDI	GTCTC	2 cut(s)	90, 327
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	3 cut(s)	90, 231, 456
BlsI	GCNGC	3 cut(s)	91, 232, 457
BmiI	GGNNCC	1 cut(s)	325
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	2 cut(s)	85, 213
BpuEI	CTTGAG	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	298, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	574
BseDI	CCNNGG	2 cut(s)	298, 573
BseGI	GGATG	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	3 cut(s)	99, 378, 474
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	3 cut(s)	101, 242, 442
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	537
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	90, 327
BsnI	GGCC	1 cut(s)	537
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	582
Bsp19I	CCATGG	1 cut(s)	298
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	3 cut(s)	98, 379, 475
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	298, 573
BssMI	GATC	1 cut(s)	582
BssT1I	CCWWGG	2 cut(s)	298, 573
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	4 cut(s)	85, 213, 387, 483
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	510
BstKTI	GATC	1 cut(s)	585
BstMAI	GTCTC	2 cut(s)	90, 327
BstMBI	GATC	1 cut(s)	582
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 230
BstNSI	RCATGY	2 cut(s)	39, 480
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	101, 242, 442
BstV2I	GAAGAC	1 cut(s)	527
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	537
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	510
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	117, 148
Cac8I	GCNNGC	1 cut(s)	193
CciI	TCATGA	1 cut(s)	423
CviAII	CATG	8 cut(s)	36, 188, 220, 299, 328, 424, 477, 605
DdeI	CTNAG	4 cut(s)	85, 213, 387, 483
DpnI	GATC	1 cut(s)	584
DpnII	GATC	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	298, 573
Eco24I	GRGCYC	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	298, 573
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	2 cut(s)	298, 573
FaeI	CATG	8 cut(s)	39, 191, 223, 302, 331, 427, 480, 608
FatI	CATG	8 cut(s)	35, 187, 219, 298, 327, 423, 476, 604
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	90, 231, 456
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	3 cut(s)	90, 231, 456
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	3 cut(s)	90, 231, 456
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	537
HapII	CCGG	1 cut(s)	538
Hin1II	CATG	8 cut(s)	39, 191, 223, 302, 331, 427, 480, 608
HinfI	GANTC	2 cut(s)	5, 356
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	2 cut(s)	373, 424
Hpy8I	GTNNAC	1 cut(s)	364
HpyCH4V	TGCA	6 cut(s)	69, 104, 141, 146, 191, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 230
HpyF3I	CTNAG	4 cut(s)	85, 213, 387, 483
Hsp92II	CATG	8 cut(s)	39, 191, 223, 302, 331, 427, 480, 608
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	1 cut(s)	582
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	4 cut(s)	106, 210, 386, 551
Lsp1109I	GCAGC	3 cut(s)	101, 242, 442
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	3 cut(s)	241, 353, 395
MalI	GATC	1 cut(s)	584
MboI	GATC	1 cut(s)	582
MboII	GAAGA	4 cut(s)	3, 9, 356, 532
MfeI	CAATTG	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	3 cut(s)	122, 514, 557
MlyI	GAGTC	2 cut(s)	14, 350
MseI	TTAA	3 cut(s)	237, 350, 610
MspI	CCGG	1 cut(s)	538
MunI	CAATTG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	192, 230
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	582
NlaIII	CATG	8 cut(s)	39, 191, 223, 302, 331, 427, 480, 608
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	2 cut(s)	241, 353
NspI	RCATGY	2 cut(s)	39, 480
PagI	TCATGA	1 cut(s)	423
PciI	ACATGT	2 cut(s)	35, 476
PkrI	GCNGC	3 cut(s)	91, 232, 457
PleI	GAGTC	2 cut(s)	13, 350
PpsI	GAGTC	2 cut(s)	13, 350
PscI	ACATGT	2 cut(s)	35, 476
Psp124BI	GAGCTC	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	237, 350, 610
SatI	GCNGC	3 cut(s)	90, 231, 456
Sau3AI	GATC	1 cut(s)	582
SchI	GAGTC	2 cut(s)	14, 350
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	3 cut(s)	122, 514, 557
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	298, 573
TaqI	TCGA	1 cut(s)	342
TasI	AATT	3 cut(s)	122, 514, 557
Tru1I	TTAA	3 cut(s)	237, 350, 610
Tru9I	TTAA	3 cut(s)	237, 350, 610
TscAI	CASTG	2 cut(s)	124, 148
TseFI	GTSAC	2 cut(s)	241, 353
TseI	GCWGC	3 cut(s)	89, 230, 455
Tsp45I	GTSAC	2 cut(s)	241, 353
TspDTI	ATGAA	3 cut(s)	115, 521, 593
TspRI	CASTG	2 cut(s)	124, 148
XapI	RAATTY	2 cut(s)	122, 514
XceI	RCATGY	2 cut(s)	39, 480
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.