Rroxscaffold_4G00283350

21 kDa protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004281
Physical Location & Seq
Forward (+)
5281651 .. 5282262
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283350.1

Sequence Viewer

Length: 612 bp
ATGGAACCCTCATTTTCTAAACATTTCTTTACATCTTCTCTCATAGTACTGCTCTTCACTACTTGTAGCATATTCTGCTCAATCTCAGCAGCTAGAGACCTTGCCCCGAAAACCAAGACCGAGTTCATTAAAACATCTTGTGGTGCAACAACCTATCCAAAACTCTGCCTTGCCTCTCTCTCAAGCCAAGCAAGTGTCATCCAAACAAGTCCTAAACTTATTGCTTGTGCAGCCCTTAATGTGACACTTTCGTCTGCTAAATCAACCTCCACTATGATGTTAAGGCTCTCCCACGGCCATGGCATGAAGCCTAGAGAAGTTGCTGCCATGAGGGACTGCGTCGAACTGTTGAGTGACTCGGTGGACGAGCTTCAAAGGTCTATTTCCAAGATGGTTAACTTTAGGAGTTCTGGTTTTGAGCTTATGATAAGTGATGTACAAACTTGGGTTAGTGCTGCCTTGACGGATGAGGGCACCTGCTCGGATGGGTTTGCTGGAAATGGGTTGAGGGGGAATTTGAAGACTGTTGTGAGGGGTCGGATTGTGAACATTGCACAATTGACTAGCAATGCCTTGGCTTTGATCAACAGATACGCCTCGGTTCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

203

Amino Acids

21.8

Weight (kDa)

9.06

Isoelectric Point (pI)

27.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 42 - 194 6.8e-41 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 485
AasI GACNNNNNNGTC 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 473
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 514
AfaI GTAC 2 cut(s) 48, 438
AgsI TTSAA 2 cut(s) 374, 520
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 3 cut(s) 92, 370, 421
AluI AGCT 3 cut(s) 92, 370, 421
Alw26I GTCTC 1 cut(s) 90
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 4 cut(s) 89, 230, 323, 455
ApoI RAATTY 1 cut(s) 514
BaeGI GKGCMC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 527
BbvI GCAGC 4 cut(s) 101, 242, 310, 442
BccI CCATC 2 cut(s) 385, 479
BceAI ACGGC 1 cut(s) 310
BclI TGATCA 1 cut(s) 582
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 3 cut(s) 93, 312, 564
BfuAI ACCTGC 1 cut(s) 485
BisI GCNGC 4 cut(s) 90, 231, 324, 456
BlsI GCNGC 4 cut(s) 91, 232, 325, 457
BmcAI AGTACT 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 6, 475
BpiI GAAGAC 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 4 cut(s) 292, 298, 573, 597
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse3DI GCAATG 2 cut(s) 549, 574
BseDI CCNNGG 4 cut(s) 292, 298, 573, 597
BseGI GGATG 3 cut(s) 198, 472, 490
BseMI GCAATG 2 cut(s) 549, 574
BseMII CTCAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 4 cut(s) 101, 242, 310, 442
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 473
BslFI GGGAC 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 436
Bsp143I GATC 1 cut(s) 582
Bsp19I CCATGG 1 cut(s) 298
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 6, 475
BspMI ACCTGC 1 cut(s) 485
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 2 cut(s) 549, 574
BsrGI TGTACA 1 cut(s) 436
BssECI CCNNGG 4 cut(s) 292, 298, 573, 597
BssMI GATC 1 cut(s) 582
BssT1I CCWWGG 2 cut(s) 298, 573
Bst4CI ACNGT 2 cut(s) 348, 526
Bst6I CTCTTC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 75
BstAUI TGTACA 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 85
BstDSI CCRYGG 2 cut(s) 292, 298
BstF5I GGATG 3 cut(s) 198, 472, 490
BstKTI GATC 1 cut(s) 585
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 1 cut(s) 582
BstMWI GCNNNNNNNGC 2 cut(s) 75, 230
BstSLI GKGCMC 1 cut(s) 476
BstV1I GCAGC 4 cut(s) 101, 242, 310, 442
BstV2I GAAGAC 1 cut(s) 527
BstXI CCANNNNNNTGG 1 cut(s) 299
BsuRI GGCC 1 cut(s) 297
BtgI CCRYGG 2 cut(s) 292, 298
BtsCI GGATG 3 cut(s) 198, 472, 490
BveI ACCTGC 1 cut(s) 485
CseI GACGC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 47, 437
CviAII CATG 3 cut(s) 299, 304, 328
CviJI RGCY 9 cut(s) 92, 186, 233, 286, 297, 310, 370, 421, 578
CviKI_1 RGCY 9 cut(s) 92, 186, 233, 286, 297, 310, 370, 421, 578
CviQI GTAC 2 cut(s) 47, 437
DdeI CTNAG 1 cut(s) 85
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 2 cut(s) 298, 573
Eco31I GGTCTC 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 298, 573
ErhI CCWWGG 2 cut(s) 298, 573
FaeI CATG 3 cut(s) 302, 307, 331
FaiI YATR 8 cut(s) 44, 71, 275, 300, 305, 329, 425, 606
FaqI GGGAC 1 cut(s) 347
FatI CATG 3 cut(s) 298, 303, 327
FbaI TGATCA 1 cut(s) 582
Fnu4HI GCNGC 4 cut(s) 90, 231, 324, 456
FokI GGATG 3 cut(s) 185, 479, 497
Fsp4HI GCNGC 4 cut(s) 90, 231, 324, 456
FspBI CTAG 3 cut(s) 93, 312, 564
GluI GCNGC 4 cut(s) 90, 231, 324, 456
HaeIII GGCC 1 cut(s) 297
HgaI GACGC 1 cut(s) 328
Hin1II CATG 3 cut(s) 302, 307, 331
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 1 cut(s) 356
HpaI GTTAAC 1 cut(s) 397
Hpy166II GTNNAC 3 cut(s) 364, 397, 547
Hpy188I TCNGA 2 cut(s) 484, 540
Hpy8I GTNNAC 3 cut(s) 364, 397, 547
Hpy99I CGWCG 1 cut(s) 344
HpyCH4III ACNGT 2 cut(s) 348, 526
HpyCH4V TGCA 3 cut(s) 146, 230, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 230
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 3 cut(s) 302, 307, 331
Ksp22I TGATCA 1 cut(s) 582
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 1 cut(s) 582
LguI GCTCTTC 1 cut(s) 59
LpnPI CCDG 3 cut(s) 396, 480, 490
Lsp1109I GCAGC 4 cut(s) 101, 242, 310, 442
MaeI CTAG 3 cut(s) 93, 312, 564
MaeIII GTNAC 2 cut(s) 241, 353
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MboII GAAGA 3 cut(s) 27, 46, 532
MfeI CAATTG 1 cut(s) 557
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 2 cut(s) 514, 557
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 8 cut(s) 19, 184, 277, 324, 463, 501, 525, 607
MseI TTAA 4 cut(s) 129, 237, 281, 396
MslI CAYNNNNRTG 2 cut(s) 275, 297
MunI CAATTG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 75, 230
NcoI CCATGG 1 cut(s) 298
NdeII GATC 1 cut(s) 582
NlaIII CATG 3 cut(s) 302, 307, 331
NlaIV GGNNCC 2 cut(s) 6, 475
NmuCI GTSAC 2 cut(s) 241, 353
PaqCI CACCTGC 1 cut(s) 485
PciSI GCTCTTC 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 4 cut(s) 91, 232, 325, 457
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 6, 475
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 2 cut(s) 48, 438
RsaNI GTAC 2 cut(s) 47, 437
RseI CAYNNNNRTG 2 cut(s) 275, 297
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 4 cut(s) 129, 237, 281, 396
SatI GCNGC 4 cut(s) 90, 231, 324, 456
Sau3AI GATC 1 cut(s) 582
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 476
SetI ASST 8 cut(s) 94, 102, 155, 269, 372, 380, 423, 479
SmiMI CAYNNNNRTG 2 cut(s) 275, 297
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 2 cut(s) 514, 557
SspMI CTAG 3 cut(s) 93, 312, 564
StyI CCWWGG 2 cut(s) 298, 573
TaaI ACNGT 2 cut(s) 348, 526
TaqI TCGA 1 cut(s) 342
TaqII GACCGA 1 cut(s) 134
TasI AATT 2 cut(s) 514, 557
TatI WGTACW 2 cut(s) 46, 436
Tru1I TTAA 4 cut(s) 129, 237, 281, 396
Tru9I TTAA 4 cut(s) 129, 237, 281, 396
TseFI GTSAC 2 cut(s) 241, 353
TseI GCWGC 4 cut(s) 89, 230, 323, 455
Tsp45I GTSAC 2 cut(s) 241, 353
TspDTI ATGAA 3 cut(s) 115, 320, 593
TspGWI ACGGA 1 cut(s) 479
Tth111I GACNNNGTC 1 cut(s) 338
XapI RAATTY 1 cut(s) 514
XspI CTAG 3 cut(s) 93, 312, 564
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.