Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004281

Physical Location & Seq

Genomic Coordinates Forward (+)

25031563 .. 25032276

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCAAGCTCTCTTTCTACTCCTCTCCGTCTCCTACCTCTTCTCCTCAGACCTCACGGCTGCCACCGTCACCGCGGCCGGAACTTCTACAAAAGCACTAAACTTCATTCAATCTTCTTGCAAAGTTACAACGTACCAATCCCTGTGCGTGGACACGCTCTCGGTCTACGCAAATACGATCCAAACAAGCCCTCGACGCCTCGTGGATGCAGCTATCGCCGTGAGTCTGAAACAAGCGCTGTCCACGAAGCTCTTCATCTCACACCTGAGGAAGAGCCAGTTCCAAACCCTTGCAGACTGCCGACCAACAACCGAAACATACACTACAGATGCGCAGTGTTCTGTCGAAGAACTCCAAGAGGTGGTGAATTCCCGTTCGCGGATCCGGTAAAGATGTCAGTCCGGGGCGGAGTCTCGGATGCGGTAAGAAAGTCACTTCATACCCAGTTCGCTAAGTTGCACCATGAAATAAACAATGTCAAGATGTTGTTCATAGCTTTTGCTAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.39

Weight (kDa)

10.37

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47380 AT4G25260 AT5G62330 AT5G62340 AT5G62350 AT5G62360
fragaria_vesca	FvH4_7g27800
malus_domestica	MD00G1105200.v1.1 MD00G1105300.v1.1 MD07G1255400.v1.1 MD07G1255500.v1.1
prunus_persica	Prupe.2G279700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0374671 RchiOBHm_Chr1g0374691
rosa_laevigata	RLG00000026722
rosa_multiflora	Rmu_co8519951.1_g000001 Rmu_sc0003443.1_g000004 Rmu_sc0004947.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283320 Rroxscaffold_4G00283350
rosa_rugosa	Rorug01G0384300 Rorug01G0384300
rosa_samantha	Rh1AG395600 Rh1AG395900 Rh1BG359700 Rh1BG360000 Rh1CG373300 Rh1CG373400 Rh1DG390800 Rh1DG391000
rosa_wichuraiana	Rw1G035080 Rw1G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	2 cut(s)	75, 380
AciI	CCGC	5 cut(s)	73, 75, 380, 408, 422
AclWI	GGATC	3 cut(s)	173, 377, 390
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	135
AfeI	AGCGCT	1 cut(s)	238
AfiI	CCNNNNNNNGG	3 cut(s)	149, 362, 379
AgsI	TTSAA	1 cut(s)	111
AluBI	AGCT	4 cut(s)	9, 213, 251, 497
AluI	AGCT	4 cut(s)	9, 213, 251, 497
Alw26I	GTCTC	2 cut(s)	35, 418
AlwI	GGATC	3 cut(s)	173, 377, 390
Aor51HI	AGCGCT	1 cut(s)	238
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	60, 210
ApoI	RAATTY	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	239, 335
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	62, 377
AxyI	CCTNAGG	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	47, 222
BceAI	ACGGC	2 cut(s)	73, 204
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	35, 418
BfmI	CTRYAG	1 cut(s)	325
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	3 cut(s)	61, 76, 211
BlsI	GCNGC	3 cut(s)	62, 77, 212
Bme1390I	CCNGG	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	404
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	3 cut(s)	197, 320, 409
BmuI	ACTGGG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	73, 403
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 362, 379
Bse1I	ACTGG	2 cut(s)	278, 445
Bse21I	CCTNAGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	73, 403
BseGI	GGATG	2 cut(s)	212, 424
BseLI	CCNNNNNNNGG	3 cut(s)	149, 362, 379
BseMII	CTCAG	2 cut(s)	61, 258
BseNI	ACTGG	2 cut(s)	278, 445
BseRI	GAGGAG	2 cut(s)	12, 35
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	47, 222
Bsh1236I	CGCG	2 cut(s)	75, 380
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	79, 386, 403
BslI	CCNNNNNNNGG	3 cut(s)	149, 362, 379
BsmAI	GTCTC	2 cut(s)	35, 418
BsmBI	CGTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	178, 382
BspACI	CCGC	5 cut(s)	73, 75, 380, 408, 422
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	2 cut(s)	60, 259
BspFNI	CGCG	2 cut(s)	75, 380
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	173, 377, 390
BspQI	GCTCTTC	2 cut(s)	258, 267
BsrI	ACTGG	2 cut(s)	278, 445
BssECI	CCNNGG	2 cut(s)	73, 403
BssMI	GATC	2 cut(s)	178, 382
BssNI	GRCGYC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	3 cut(s)	45, 258, 267
BstACI	GRCGYC	1 cut(s)	197
BstDEI	CTNAG	4 cut(s)	47, 267, 453, 504
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	212, 424
BstFNI	CGCG	2 cut(s)	75, 380
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	239, 335
BstKTI	GATC	2 cut(s)	181, 385
BstMAI	GTCTC	2 cut(s)	35, 418
BstMBI	GATC	2 cut(s)	178, 382
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 216
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	1 cut(s)	325
BstUI	CGCG	2 cut(s)	75, 380
BstV1I	GCAGC	2 cut(s)	47, 222
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	212, 424
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
CfoI	GCGC	2 cut(s)	239, 335
Cfr42I	CCGCGG	1 cut(s)	76
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	464
CviJI	RGCY	8 cut(s)	9, 60, 78, 190, 213, 251, 277, 497
CviKI_1	RGCY	8 cut(s)	9, 60, 78, 190, 213, 251, 277, 497
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	4 cut(s)	47, 267, 453, 504
DpnI	GATC	2 cut(s)	180, 384
DpnII	GATC	2 cut(s)	178, 382
EaeI	YGGCCR	1 cut(s)	76
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	45, 258, 267
EarI	CTCTTC	3 cut(s)	45, 258, 267
EciI	GGCGGA	1 cut(s)	423
EclXI	CGGCCG	1 cut(s)	76
Eco47III	AGCGCT	1 cut(s)	238
Eco52I	CGGCCG	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	1 cut(s)	467
FaiI	YATR	4 cut(s)	320, 441, 465, 494
FatI	CATG	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	61, 76, 211
FokI	GGATG	2 cut(s)	219, 431
Fsp4HI	GCNGC	3 cut(s)	61, 76, 211
FspI	TGCGCA	1 cut(s)	334
GlaI	GCGC	2 cut(s)	238, 334
GluI	GCNGC	3 cut(s)	61, 76, 211
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	3 cut(s)	79, 386, 403
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	2 cut(s)	239, 335
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	467
Hin6I	GCGC	2 cut(s)	237, 333
HinP1I	GCGC	2 cut(s)	237, 333
HinfI	GANTC	2 cut(s)	224, 411
HpaII	CCGG	3 cut(s)	79, 386, 403
HphI	GGTGA	2 cut(s)	62, 377
Hpy166II	GTNNAC	3 cut(s)	152, 167, 244
Hpy188I	TCNGA	3 cut(s)	50, 229, 418
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	3 cut(s)	152, 167, 244
Hpy99I	CGWCG	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	121, 210, 294, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 216
HpyF3I	CTNAG	4 cut(s)	47, 267, 453, 504
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	467
HspAI	GCGC	2 cut(s)	237, 333
KspI	CCGCGG	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	178, 382
LguI	GCTCTTC	2 cut(s)	258, 267
LpnPI	CCDG	7 cut(s)	92, 156, 279, 291, 399, 416, 458
Lsp1109I	GCAGC	2 cut(s)	47, 222
LweI	GCATC	3 cut(s)	197, 320, 409
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	68, 125, 432
MalI	GATC	2 cut(s)	180, 384
MboI	GATC	2 cut(s)	178, 382
MboII	GAAGA	5 cut(s)	32, 106, 245, 284, 360
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	2 cut(s)	368, 508
MlyI	GAGTC	2 cut(s)	233, 420
MnlI	CCTC	8 cut(s)	33, 48, 56, 63, 202, 210, 262, 353
MroXI	GAANNNNTTC	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	3 cut(s)	79, 386, 403
MspR9I	CCNGG	1 cut(s)	404
MvnI	CGCG	2 cut(s)	75, 380
MwoI	GCNNNNNNNGC	2 cut(s)	196, 216
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	2 cut(s)	178, 382
NlaIII	CATG	1 cut(s)	467
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	68, 432
NsbI	TGCGCA	1 cut(s)	334
PciSI	GCTCTTC	2 cut(s)	258, 267
PdmI	GAANNNNTTC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	62, 77, 212
PleI	GAGTC	2 cut(s)	232, 419
PpsI	GAGTC	2 cut(s)	232, 419
PspN4I	GGNNCC	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SacII	CCGCGG	1 cut(s)	76
SapI	GCTCTTC	2 cut(s)	258, 267
SatI	GCNGC	3 cut(s)	61, 76, 211
Sau3AI	GATC	2 cut(s)	178, 382
SchI	GAGTC	2 cut(s)	233, 420
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	9 cut(s)	11, 40, 55, 135, 215, 253, 268, 364, 499
SfaNI	GCATC	3 cut(s)	197, 320, 409
SfcI	CTRYAG	1 cut(s)	325
Sfr303I	CCGCGG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	76
Sse9I	AATT	2 cut(s)	368, 508
SsiI	CCGC	5 cut(s)	73, 75, 380, 408, 422
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	194, 346
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	2 cut(s)	368, 508
TauI	GCSGC	1 cut(s)	78
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	2 cut(s)	68, 432
TseI	GCWGC	2 cut(s)	60, 210
Tsp45I	GTSAC	2 cut(s)	68, 432
TspDTI	ATGAA	5 cut(s)	95, 245, 428, 480, 481
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.