Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003649

Physical Location & Seq

Genomic Coordinates Forward (+)

18427735 .. 18429281

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAGGAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGATCGCTTTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCTTAACTATCTTAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGTAGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGAACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACTCATTAACAAACAACGCAAGGAGCTTCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAGAGACAACACCAACAACAACAAATCCAAACTTCTTTTATGATGAGACAAGACCAAACAATGTTCACATGGCCACTACATCATCATAATGTTCAAGTTCCAGCTCTTTTCATGAATCAAACCAACTCGTTTTGCGACCAAGAAGATGTTAAGCCAGTGCTCATCAAGAACATGGTCAAGATCGAAGATCAAGAACTGGAGAAAACAAACCCTCATCATCATCAAGATTCAATGACAAACGCTTTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCAGGCGAGGGTTTCTCCATGAACTCTATCTTGAGCGCCAACACAAACTCTCCATTGCTTAATACAAGTAATGATAATCAGTGGTTCGGGAATTTCCAGGCCGAAACCGTAAACTTGTTCTCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACTATAAGTTGGGAAGACATAAGCTCTCTTGTTTATTCTGATTCAAAGCAATTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

310

Amino Acids

35.58

Weight (kDa)

6.83

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	2.3e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	5.3e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 112	1.2e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49690 AT5G65790
fragaria_vesca	FvH4_1g18500 FvH4_1g18500 FvH4_2g32440
malus_domestica	MD02G1191000.v1.1 MD08G1076200.v1.1 MD15G1063300.v1.1 MD15G1302300.v1.1
prunus_persica	Prupe.1G417400_v2.0.a1 Prupe.6G214300_v2.0.a1
pyrus_communis	pycom02g15540 pycom08g06310 pycom15g06010 pycom15g26540
rosa_chinensis	RchiOBHm_Chr2g0109131 RchiOBHm_Chr6g0310231
rosa_laevigata	RLG00000010497 RLG00000017715
rosa_multiflora	Rmu_sc0000186.1_g000014 Rmu_sc0002348.1_g000027
rosa_roxburghii	Rroxscaffold_2G00134480 Rroxscaffold_7G00158720
rosa_rugosa	Rorug02G0157300 Rorug06G0378300 Rorug06G0378400
rosa_samantha	Rh2AG209400 Rh2BG219800 Rh2CG211900 Rh2DG215500 Rh6AG492500 Rh6BG502200 Rh6CG507100 Rh6DG493300
rosa_wichuraiana	Rw6G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	98
AclWI	GGATC	3 cut(s)	122, 689, 724
AcoI	YGGCCR	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	808
AfaI	GTAC	1 cut(s)	856
AgsI	TTSAA	5 cut(s)	89, 377, 512, 648, 918
AjnI	CCWGG	1 cut(s)	813
AluBI	AGCT	4 cut(s)	373, 383, 521, 897
AluI	AGCT	4 cut(s)	373, 383, 521, 897
Alw21I	GWGCWC	2 cut(s)	13, 579
Alw26I	GTCTC	3 cut(s)	57, 415, 457
AlwI	GGATC	3 cut(s)	122, 689, 724
AoxI	GGCC	3 cut(s)	44, 488, 816
ApeKI	GCWGC	2 cut(s)	281, 394
ApoI	RAATTY	1 cut(s)	808
AspLEI	GCGC	1 cut(s)	755
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	98
BauI	CACGAG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	2 cut(s)	13, 579
BbvCI	CCTCAGC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	268, 406
BccI	CCATC	1 cut(s)	400
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	1 cut(s)	815
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	3 cut(s)	57, 415, 457
BfoI	RGCGCY	1 cut(s)	756
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	2 cut(s)	282, 395
BlsI	GCNGC	2 cut(s)	283, 396
BmcAI	AGTACT	1 cut(s)	856
Bme1390I	CCNGG	2 cut(s)	294, 815
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	100, 844
BmrFI	CCNGG	2 cut(s)	294, 815
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	894
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	323, 769
BpuMI	CCSGG	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	751, 781
Bse1I	ACTGG	2 cut(s)	572, 618
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	770
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	815
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	770
BseMII	CTCAG	4 cut(s)	48, 158, 207, 852
BseNI	ACTGG	2 cut(s)	572, 618
BseXI	GCAGC	2 cut(s)	268, 406
BshFI	GGCC	3 cut(s)	46, 490, 818
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	2 cut(s)	13, 579
BsiSI	CCGG	2 cut(s)	102, 293
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	3 cut(s)	57, 415, 457
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	46, 490, 818
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	13, 579
Bsp143I	GATC	7 cut(s)	114, 597, 604, 664, 694, 716, 865
BspANI	GGCC	3 cut(s)	46, 490, 818
BspCNI	CTCAG	4 cut(s)	49, 159, 208, 851
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	2 cut(s)	100, 844
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	3 cut(s)	122, 689, 724
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	770
BsrI	ACTGG	2 cut(s)	572, 618
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	7 cut(s)	114, 597, 604, 664, 694, 716, 865
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	2 cut(s)	15, 826
Bst6I	CTCTTC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	6 cut(s)	57, 167, 185, 216, 712, 838
BstH2I	RGCGCY	1 cut(s)	756
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	7 cut(s)	117, 600, 607, 667, 697, 719, 868
BstMAI	GTCTC	3 cut(s)	57, 415, 457
BstMBI	GATC	7 cut(s)	114, 597, 604, 664, 694, 716, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 172
BstNI	CCWGG	1 cut(s)	815
BstSCI	CCNGG	2 cut(s)	292, 813
BstV1I	GCAGC	2 cut(s)	268, 406
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	46, 490, 818
BtsIMutI	CAGTG	2 cut(s)	579, 803
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	1 cut(s)	755
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	855
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	5 cut(s)	203, 486, 529, 589, 736
CviQI	GTAC	1 cut(s)	855
DdeI	CTNAG	6 cut(s)	57, 167, 185, 216, 712, 838
DpnI	GATC	7 cut(s)	116, 599, 606, 666, 696, 718, 867
DpnII	GATC	7 cut(s)	114, 597, 604, 664, 694, 716, 865
DraI	TTTAAA	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	57
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	813
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	5 cut(s)	206, 489, 532, 592, 739
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	5 cut(s)	202, 485, 528, 588, 735
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	282, 395
Fsp4HI	GCNGC	2 cut(s)	282, 395
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	2 cut(s)	282, 395
GsuI	CTGGAG	1 cut(s)	635
HaeII	RGCGCY	1 cut(s)	756
HaeIII	GGCC	3 cut(s)	46, 490, 818
HapII	CCGG	2 cut(s)	102, 293
HhaI	GCGC	1 cut(s)	755
Hin1II	CATG	5 cut(s)	206, 489, 532, 592, 739
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	3 cut(s)	532, 644, 914
HpaII	CCGG	2 cut(s)	102, 293
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	483, 829
Hpy188I	TCNGA	2 cut(s)	217, 913
Hpy8I	GTNNAC	2 cut(s)	483, 829
HpyCH4III	ACNGT	2 cut(s)	15, 826
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	68, 162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 172
HpyF3I	CTNAG	6 cut(s)	57, 167, 185, 216, 712, 838
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	206, 489, 532, 592, 739
HspAI	GCGC	1 cut(s)	753
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	7 cut(s)	114, 597, 604, 664, 694, 716, 865
LmnI	GCTCC	3 cut(s)	370, 391, 842
Lsp1109I	GCAGC	2 cut(s)	268, 406
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	7 cut(s)	116, 599, 606, 666, 696, 718, 867
MboI	GATC	7 cut(s)	114, 597, 604, 664, 694, 716, 865
MfeI	CAATTG	3 cut(s)	109, 255, 287
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	2 cut(s)	13, 579
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	5 cut(s)	109, 255, 287, 808, 923
MluNI	TGGCCA	1 cut(s)	490
MnlI	CCTC	9 cut(s)	52, 98, 135, 162, 211, 327, 639, 718, 856
Mox20I	TGGCCA	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	490
MseI	TTAA	6 cut(s)	140, 177, 354, 567, 777, 931
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	490
MspI	CCGG	2 cut(s)	102, 293
MspR9I	CCNGG	2 cut(s)	294, 815
MunI	CAATTG	3 cut(s)	109, 255, 287
MvaI	CCWGG	1 cut(s)	815
MwoI	GCNNNNNNNGC	2 cut(s)	105, 172
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	7 cut(s)	114, 597, 604, 664, 694, 716, 865
NlaIII	CATG	5 cut(s)	206, 489, 532, 592, 739
NlaIV	GGNNCC	2 cut(s)	100, 844
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	528
PaqCI	CACCTGC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	532, 644, 914
PkrI	GCNGC	2 cut(s)	283, 396
Psp6I	CCWGG	1 cut(s)	813
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	2 cut(s)	100, 844
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	1 cut(s)	856
RsaNI	GTAC	1 cut(s)	855
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	6 cut(s)	140, 177, 354, 567, 777, 931
SatI	GCNGC	2 cut(s)	282, 395
Sau3AI	GATC	7 cut(s)	114, 597, 604, 664, 694, 716, 865
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	856
ScrFI	CCNGG	2 cut(s)	294, 815
SduI	GDGCHC	2 cut(s)	13, 579
SetI	ASST	8 cut(s)	36, 173, 252, 269, 375, 385, 523, 899
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	338, 748
SmoI	CTYRAG	2 cut(s)	338, 748
Sse9I	AATT	5 cut(s)	109, 255, 287, 808, 923
StyD4I	CCNGG	2 cut(s)	292, 813
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	15, 826
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	600
TasI	AATT	5 cut(s)	109, 255, 287, 808, 923
TatI	WGTACW	1 cut(s)	854
TfiI	GAWTC	3 cut(s)	532, 644, 914
Tru1I	TTAA	6 cut(s)	140, 177, 354, 567, 777, 931
Tru9I	TTAA	6 cut(s)	140, 177, 354, 567, 777, 931
TscAI	CASTG	2 cut(s)	579, 803
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	281, 394
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	431, 517, 545, 752
TspRI	CASTG	2 cut(s)	579, 803
XapI	RAATTY	1 cut(s)	808
ZrmI	AGTACT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.