Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003649

Physical Location & Seq

Genomic Coordinates Forward (+)

36213747 .. 36215842

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G417400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTGAAGAGAGGACCATGGTCACCTGAAGAAGACACCAAGCTCAAGTCTTATATCGAACAGCATGGCACCGGCGGCAACTGGATCGCTTTGCCACAGAAGATCGGGCTTAAGAGATGTGGGAAGAGCTGCCGGCTTAGATGGTTGAATTATCTCCGCCCAAACATCAGGCATGGAGGGTTTTCTGAGGAAGAAGACAACATCATTTGCAGCCTCTACATAAGTATTGGAAGCAGGTGGTCTATAATAGCGGCGCAGCTGCCAGGAAGAACTGACAACGATATAAAGAACTACTGGAACACAAGGCTGAAAAAGAAGCTTCTGGGCAAGCAGCGTAAAGAACAACAGCTGGCTCGCAGATCATCATCCGGCCTGATCAAACAAGACATCAGAAGATCATCAGGGAGTGGCGGTGGAGGGAGTAATTCTCATCCCATGGTTCCGGCAGCAGATGATCAAAGCCCTTACTGGCCAGAGTTGCCAGTGCTTGCAGTGCCAACAGTCCTACCTTACTCCCCATCAATTCAACAACATCAACATCAACAACAGCACCAGCCTTGTTTCAACGACCACGCATCCATCAGAAAACTGCTCATCAAGCTTGGAGGAAGGTTTAATTCAGATGTTCATCATCAAGATGACACAAATGTTCAACCTATCCAAGATGGGCCCACCATTAATCTTCAGTTCCCACCAGCTCTTGACTCTGCTCAGCAAGTTTATGAGCAACAGTCTTCTGCTCCTGTGGCCTTTATCAGAAACAGCAATGACATCATGGTCAGCTCTCATCATCATCAATTTGAACAAACCCCGTACATGGTCAACAACAATACAGATGACATAATTGGAGATGGTATGCACATGTTTCAAGGGCAAAATGGTAATTACGTGACTGATCAGCTTAAGGAAATGGTGTACAACAACATGAACCCACAAAGATTAGATGCGCTGGAGTTCCTATATGGGGAAGACATGATGATGGTTATGAATGGTGAAAGTATTGGGTGGGGTGAGATGCAGCTGATTTGTCCTCCTACACATGTGGCCTCCTCCTCAGTCGATGCCGACGGTGGCAGCTATGAGCGATTGGTGCCTCAAGAATTATGTGGTTTCAATAATGGGTTGAGTAGCTATCCTGCAGGGGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

394

Amino Acids

44.03

Weight (kDa)

6.53

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49690 AT5G65790
fragaria_vesca	FvH4_1g18500 FvH4_1g18500 FvH4_2g32440
malus_domestica	MD02G1191000.v1.1 MD08G1076200.v1.1 MD15G1063300.v1.1 MD15G1302300.v1.1
prunus_persica	Prupe.1G417400_v2.0.a1 Prupe.6G214300_v2.0.a1
pyrus_communis	pycom02g15540 pycom08g06310 pycom15g06010 pycom15g26540
rosa_chinensis	RchiOBHm_Chr2g0109131 RchiOBHm_Chr6g0310231
rosa_laevigata	RLG00000010497 RLG00000017715
rosa_multiflora	Rmu_sc0000186.1_g000014 Rmu_sc0002348.1_g000027
rosa_roxburghii	Rroxscaffold_2G00134480 Rroxscaffold_7G00158720
rosa_rugosa	Rorug02G0157300 Rorug06G0378300 Rorug06G0378400
rosa_samantha	Rh2AG209400 Rh2BG219800 Rh2CG211900 Rh2DG215500 Rh6AG492500 Rh6BG502200 Rh6CG507100 Rh6DG493300
rosa_wichuraiana	Rw6G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
AasI	GACNNNNNNGTC	1 cut(s)	806
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	2 cut(s)	98, 1120
AciI	CCGC	4 cut(s)	105, 187, 281, 441
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	500
AcuI	CTGAAG	2 cut(s)	78, 698
AfaI	GTAC	2 cut(s)	845, 947
AfiI	CCNNNNNNNGG	2 cut(s)	847, 994
AflII	CTTAAG	2 cut(s)	140, 932
AflIII	ACRYGT	2 cut(s)	891, 1069
AgsI	TTSAA	8 cut(s)	178, 557, 595, 683, 833, 899, 1144, 1178
AjnI	CCWGG	1 cut(s)	292
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	5 cut(s)	400, 500, 698, 777, 1074
ApaI	GGGCCC	1 cut(s)	702
ApeKI	GCWGC	8 cut(s)	159, 240, 286, 289, 361, 476, 1048, 1104
AseI	ATTAAT	1 cut(s)	708
AspLEI	GCGC	2 cut(s)	286, 979
AspS9I	GGNCC	3 cut(s)	44, 698, 699
AsuHPI	GGTGA	3 cut(s)	45, 1034, 1052
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	702
BalI	TGGCCA	1 cut(s)	502
BanI	GGYRCC	2 cut(s)	98, 1120
BanII	GRGCYC	2 cut(s)	13, 702
BbsI	GAAGAC	4 cut(s)	69, 231, 756, 1005
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	8 cut(s)	146, 252, 276, 298, 373, 488, 1060, 1116
BccI	CCATC	6 cut(s)	165, 556, 617, 689, 875, 1003
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	3 cut(s)	405, 484, 925
BfmI	CTRYAG	1 cut(s)	1167
BfrI	CTTAAG	2 cut(s)	140, 932
BfuAI	ACCTGC	1 cut(s)	255
BlpI	GCTNAGC	1 cut(s)	741
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	44, 698, 699
BmiI	GGNNCC	4 cut(s)	100, 471, 700, 1122
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	4 cut(s)	614, 964, 1035, 1081
BoxI	GACNNNNGTC	1 cut(s)	49
BpiI	GAAGAC	4 cut(s)	69, 231, 756, 1005
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
BpmI	CTGGAG	1 cut(s)	1001
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	2 cut(s)	59, 1110
BsaAI	YACGTR	1 cut(s)	919
BsaBI	GATNNNNATC	2 cut(s)	394, 657
BsaJI	CCNNGG	2 cut(s)	47, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	847, 994
Bse118I	RCCGGY	2 cut(s)	101, 162
Bse1I	ACTGG	4 cut(s)	116, 329, 503, 512
Bse3DI	GCAATG	1 cut(s)	802
Bse8I	GATNNNNATC	2 cut(s)	394, 657
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	47, 465
BseGI	GGATG	3 cut(s)	395, 460, 605
BseJI	GATNNNNATC	2 cut(s)	394, 657
BseLI	CCNNNNNNNGG	2 cut(s)	847, 994
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	3 cut(s)	207, 755, 1098
BseNI	ACTGG	4 cut(s)	116, 329, 503, 512
BseRI	GAGGAG	2 cut(s)	1069, 1072
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	8 cut(s)	146, 252, 276, 298, 373, 488, 1060, 1116
BshFI	GGCC	5 cut(s)	402, 502, 700, 779, 1076
BshNI	GGYRCC	2 cut(s)	98, 1120
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	4 cut(s)	102, 163, 399, 473
BslI	CCNNNNNNNGG	2 cut(s)	847, 994
BsnI	GGCC	5 cut(s)	402, 502, 700, 779, 1076
Bsp120I	GGGCCC	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	13, 702
Bsp1407I	TGTACA	1 cut(s)	945
Bsp143I	GATC	7 cut(s)	114, 132, 389, 405, 425, 484, 925
Bsp1720I	GCTNAGC	1 cut(s)	741
Bsp19I	CCATGG	2 cut(s)	47, 465
BspACI	CCGC	4 cut(s)	105, 187, 281, 441
BspANI	GGCC	5 cut(s)	402, 502, 700, 779, 1076
BspCNI	CTCAG	3 cut(s)	208, 754, 1097
BspLI	GGNNCC	4 cut(s)	100, 471, 700, 1122
BspMAI	CTGCAG	1 cut(s)	1171
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	149
BspT107I	GGYRCC	2 cut(s)	98, 1120
BspTI	CTTAAG	2 cut(s)	140, 932
BsrDI	GCAATG	1 cut(s)	802
BsrFI	RCCGGY	2 cut(s)	101, 162
BsrGI	TGTACA	1 cut(s)	945
BsrI	ACTGG	4 cut(s)	116, 329, 503, 512
BssAI	RCCGGY	2 cut(s)	101, 162
BssECI	CCNNGG	2 cut(s)	47, 465
BssMI	GATC	7 cut(s)	114, 132, 389, 405, 425, 484, 925
BssT1I	CCWWGG	2 cut(s)	47, 465
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	532, 762, 1100
Bst6I	CTCTTC	2 cut(s)	32, 149
BstAFI	CTTAAG	2 cut(s)	140, 932
BstAUI	TGTACA	1 cut(s)	945
BstBAI	YACGTR	1 cut(s)	919
BstC8I	GCNNGC	5 cut(s)	164, 359, 381, 385, 519
BstDEI	CTNAG	4 cut(s)	167, 216, 741, 1084
BstDSI	CCRYGG	2 cut(s)	47, 465
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	395, 460, 605
BstHHI	GCGC	2 cut(s)	286, 979
BstKTI	GATC	7 cut(s)	117, 135, 392, 408, 428, 487, 928
BstMBI	GATC	7 cut(s)	114, 132, 389, 405, 425, 484, 925
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 508, 523, 628, 776, 1120
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	895, 1073
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	1167
BstSLI	GKGCMC	1 cut(s)	702
BstV1I	GCAGC	8 cut(s)	146, 252, 276, 298, 373, 488, 1060, 1116
BstV2I	GAAGAC	4 cut(s)	69, 231, 756, 1005
BsuRI	GGCC	5 cut(s)	402, 502, 700, 779, 1076
BtgI	CCRYGG	2 cut(s)	47, 465
BtsCI	GGATG	3 cut(s)	395, 460, 605
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	519, 528
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	164, 359, 381, 385, 519
CfoI	GCGC	2 cut(s)	286, 979
Cfr10I	RCCGGY	2 cut(s)	101, 162
Cfr13I	GGNCC	3 cut(s)	44, 698, 699
Csp6I	GTAC	2 cut(s)	844, 946
CviQI	GTAC	2 cut(s)	844, 946
DdeI	CTNAG	4 cut(s)	167, 216, 741, 1084
DpnI	GATC	7 cut(s)	116, 134, 391, 407, 427, 486, 927
DpnII	GATC	7 cut(s)	114, 132, 389, 405, 425, 484, 925
DrdI	GACNNNNNNGTC	1 cut(s)	806
DseDI	GACNNNNNNGTC	1 cut(s)	806
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	2 cut(s)	32, 149
EarI	CTCTTC	2 cut(s)	32, 149
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 465
Eco24I	GRGCYC	2 cut(s)	13, 702
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	78, 698
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	47, 465
EcoT38I	GRGCYC	2 cut(s)	13, 702
ErhI	CCWWGG	2 cut(s)	47, 465
FbaI	TGATCA	3 cut(s)	405, 484, 925
FokI	GGATG	3 cut(s)	382, 447, 592
FriOI	GRGCYC	2 cut(s)	13, 702
GlaI	GCGC	2 cut(s)	285, 978
GsuI	CTGGAG	1 cut(s)	1001
HaeIII	GGCC	5 cut(s)	402, 502, 700, 779, 1076
HapII	CCGG	4 cut(s)	102, 163, 399, 473
HhaI	GCGC	2 cut(s)	286, 979
Hin6I	GCGC	2 cut(s)	284, 977
HinP1I	GCGC	2 cut(s)	284, 977
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	2 cut(s)	347, 629
HinfI	GANTC	1 cut(s)	734
HpaII	CCGG	4 cut(s)	102, 163, 399, 473
HphI	GGTGA	3 cut(s)	45, 1034, 1052
Hpy166II	GTNNAC	2 cut(s)	853, 946
Hpy188I	TCNGA	5 cut(s)	217, 422, 614, 652, 788
Hpy188III	TCNNGA	3 cut(s)	665, 731, 1127
Hpy8I	GTNNAC	2 cut(s)	853, 946
Hpy99I	CGWCG	1 cut(s)	1100
HpyAV	CCTTC	1 cut(s)	633
HpyCH4III	ACNGT	3 cut(s)	532, 762, 1100
HpyCH4IV	ACGT	2 cut(s)	33, 918
HpyCH4V	TGCA	5 cut(s)	240, 521, 889, 1048, 1169
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 508, 523, 628, 776, 1120
HpyF3I	CTNAG	4 cut(s)	167, 216, 741, 1084
HpySE526I	ACGT	2 cut(s)	33, 918
HspAI	GCGC	2 cut(s)	284, 977
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Ksp22I	TGATCA	3 cut(s)	405, 484, 925
Kzo9I	GATC	7 cut(s)	114, 132, 389, 405, 425, 484, 925
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	16, 775
Lsp1109I	GCAGC	8 cut(s)	146, 252, 276, 298, 373, 488, 1060, 1116
LweI	GCATC	4 cut(s)	614, 964, 1035, 1081
MaeII	ACGT	2 cut(s)	33, 918
MaeIII	GTNAC	3 cut(s)	20, 51, 919
MalI	GATC	7 cut(s)	116, 134, 391, 407, 427, 486, 927
MboI	GATC	7 cut(s)	114, 132, 389, 405, 425, 484, 925
MhlI	GDGCHC	2 cut(s)	13, 702
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	8 cut(s)	178, 454, 552, 646, 827, 873, 913, 1130
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	1 cut(s)	728
Mox20I	TGGCCA	1 cut(s)	502
MroNI	GCCGGC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	4 cut(s)	141, 645, 708, 933
MslI	CAYNNNNRTG	2 cut(s)	666, 1007
Msp20I	TGGCCA	1 cut(s)	502
MspA1I	CMGCKG	3 cut(s)	289, 379, 1051
MspCI	CTTAAG	2 cut(s)	140, 932
MspI	CCGG	4 cut(s)	102, 163, 399, 473
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	105, 508, 523, 628, 776, 1120
NaeI	GCCGGC	1 cut(s)	164
NcoI	CCATGG	2 cut(s)	47, 465
NdeII	GATC	7 cut(s)	114, 132, 389, 405, 425, 484, 925
NgoMIV	GCCGGC	1 cut(s)	162
NlaIV	GGNNCC	4 cut(s)	100, 471, 700, 1122
NmuCI	GTSAC	3 cut(s)	20, 51, 919
NspI	RCATGY	2 cut(s)	895, 1073
PaqCI	CACCTGC	1 cut(s)	255
PciI	ACATGT	2 cut(s)	891, 1069
PciSI	GCTCTTC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Ppu21I	YACGTR	1 cut(s)	919
PscI	ACATGT	2 cut(s)	891, 1069
PshAI	GACNNNNGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	100, 471, 700, 1122
PspOMI	GGGCCC	1 cut(s)	698
PspPI	GGNCC	3 cut(s)	44, 698, 699
PstI	CTGCAG	1 cut(s)	1171
PvuII	CAGCTG	3 cut(s)	289, 379, 1051
RsaI	GTAC	2 cut(s)	845, 947
RsaNI	GTAC	2 cut(s)	844, 946
RseI	CAYNNNNRTG	2 cut(s)	666, 1007
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	4 cut(s)	141, 645, 708, 933
Sau3AI	GATC	7 cut(s)	114, 132, 389, 405, 425, 484, 925
Sau96I	GGNCC	3 cut(s)	44, 698, 699
SbfI	CCTGCAGG	1 cut(s)	1171
SchI	GAGTC	1 cut(s)	728
ScrFI	CCNGG	1 cut(s)	294
SdaI	CCTGCAGG	1 cut(s)	1171
SduI	GDGCHC	2 cut(s)	13, 702
SfaNI	GCATC	4 cut(s)	614, 964, 1035, 1081
SfcI	CTRYAG	1 cut(s)	1167
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	666, 1007
SmlI	CTYRAG	4 cut(s)	74, 140, 932, 1125
SmoI	CTYRAG	4 cut(s)	74, 140, 932, 1125
Sse8387I	CCTGCAGG	1 cut(s)	1171
Sse9I	AATT	8 cut(s)	178, 454, 552, 646, 827, 873, 913, 1130
SsiI	CCGC	4 cut(s)	105, 187, 281, 441
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	47, 465
TaaI	ACNGT	3 cut(s)	532, 762, 1100
TaiI	ACGT	2 cut(s)	36, 921
TaqI	TCGA	2 cut(s)	87, 1089
TasI	AATT	8 cut(s)	178, 454, 552, 646, 827, 873, 913, 1130
TatI	WGTACW	1 cut(s)	945
TauI	GCSGC	2 cut(s)	108, 284
Tru1I	TTAA	4 cut(s)	141, 645, 708, 933
Tru9I	TTAA	4 cut(s)	141, 645, 708, 933
TscAI	CASTG	2 cut(s)	519, 528
TseFI	GTSAC	3 cut(s)	20, 51, 919
TseI	GCWGC	8 cut(s)	159, 240, 286, 289, 361, 476, 1048, 1104
Tsp45I	GTSAC	3 cut(s)	20, 51, 919
TspDTI	ATGAA	3 cut(s)	647, 971, 1031
TspRI	CASTG	2 cut(s)	519, 528
Vha464I	CTTAAG	2 cut(s)	140, 932
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	708
XceI	RCATGY	2 cut(s)	895, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.