pycom15g26540
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
21477345 .. 21478731
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g26540.3

Sequence Viewer

Length: 1140 bp
ATGGGCAGAGCTCCTTGCTGTGACAAAGCCAACGTTAAGAAAGGCCCTTGGTCACCTGAAGAAGATGCTACACTCAAGGCTTATATCGAGAAGCATGGCACCGGCGGCAACTGGATTACCTTGCCTCAGAAGATAGGCCTTAGAAGGTGCGGCAAAAGCTGTCGACTTAGATGGTTGAATTATCTTCGGCCGAATATCAAGCACGGCGGGTTCTCAGAGGAAGAAGATAACATCATTTGCAGCCTCTACATGAGTATTGGAAGCAGGTGGTCTGTCATTGCAGCCCAGTTACCAGGGCGAACGGACAACGATATTAAGAACTACTGGAACACAAGGCTGAAGAAAAAGCTCTTGGGCAAGCAGCGTAAACAACAGGAGGCTCAGCAGAGTCGCCGCGCTGCCATCTTTAAGCAAGAGATGATCAAAAGATCAGAAAATAACGCAAATTTTATTAATATCTCAGCTGGGTTTTTCAACCAAAACCCTTATAACTGGCCAGAGCTACCAGTAGTGCCAGTGGCTAATTATCAAACACATGACCTTCAACTCATGCAGGATGAGGCTTCCATTAAGACCATGCTCATCAATCTTGGAGGAAGATTTTCCCATGATTCTGACACTAGCACCACAAGTTTTCAGTACCCGGTTGATATTTCATCCACCTCGTCATCAGATCACCAATTCTATCAGAGCTCCATTGATGTTCTTGCTTCTACTTCAGCAGCCAACAGTAATAACTATTCTCAATTTCCAAGCACAAACTTTGATGCTAGTAACGGTACTGGGGGTTCAAGTAGTCCAACCATATTTCATGGGCTCGACAATCAGAATAACAATCTACAGGCTGATCATCTTCACCAGCTAACTGAATTGGAGGTTTACGACAACAGTTTTGCTCATCAGCATCAGCAACTGGGTGGTTTTTATTATCAAGTCTCCGAGGAGACGTTGAACAACGGTAGCAGTGCAGGGACCAGTACTGCTTCTGCAGAGAGTGAAATTAGTTGGGGAGACATAAACTCACTGGTTTATAGTACTCAAATGGTTGCAGACTATGAAACCTGCTGCCAACAAGCAGTAGTAGTACCACAAGATCAACATTCTTTTTTTGCAGAGGCATCCTACTTTGGCCTCAAATAA

Protein Analysis

380

Amino Acids

42.38

Weight (kDa)

6.0

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 2 cut(s) 255, 1070
AccB1I GGYRCC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 163
AccII CGCG 1 cut(s) 396
AciI CCGC 4 cut(s) 105, 150, 207, 394
AclI AACGTT 1 cut(s) 33
AcoI YGGCCR 2 cut(s) 188, 494
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 3 cut(s) 78, 359, 702
AfaI GTAC 5 cut(s) 641, 781, 979, 1036, 1086
AgsI TTSAA 5 cut(s) 178, 475, 545, 792, 952
AjnI CCWGG 1 cut(s) 292
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 7 cut(s) 11, 159, 349, 464, 502, 693, 862
AluI AGCT 7 cut(s) 11, 159, 349, 464, 502, 693, 862
Alw21I GWGCWC 2 cut(s) 13, 695
Alw26I GTCTC 3 cut(s) 938, 940, 1005
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 5 cut(s) 43, 136, 188, 494, 1129
ApeKI GCWGC 6 cut(s) 240, 281, 361, 398, 722, 1065
ApoI RAATTY 1 cut(s) 445
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
AseI ATTAAT 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 601
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 44, 972
AsuC2I CCSGG 1 cut(s) 644
AsuHPI GGTGA 3 cut(s) 45, 668, 848
AvaII GGWCC 1 cut(s) 972
BalI TGGCCA 1 cut(s) 496
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 3 cut(s) 13, 695, 819
Bbv12I GWGCWC 2 cut(s) 13, 695
BbvI GCAGC 6 cut(s) 252, 293, 373, 385, 734, 1052
BccI CCATC 2 cut(s) 165, 410
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 2 cut(s) 420, 847
BcnI CCSGG 1 cut(s) 644
BcoDI GTCTC 3 cut(s) 938, 940, 1005
BfaI CTAG 2 cut(s) 621, 771
BfmI CTRYAG 2 cut(s) 839, 987
BfuAI ACCTGC 2 cut(s) 255, 1070
BisI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 9 cut(s) 107, 152, 242, 283, 363, 395, 400, 724, 1067
BmcAI AGTACT 2 cut(s) 979, 1036
Bme1390I CCNGG 2 cut(s) 294, 644
Bme18I GGWCC 1 cut(s) 972
BmgT120I GGNCC 2 cut(s) 44, 972
BmiI GGNNCC 2 cut(s) 100, 973
BmrFI CCNGG 2 cut(s) 294, 644
BmrI ACTGGG 3 cut(s) 280, 792, 923
BmsI GCATC 4 cut(s) 55, 757, 913, 1127
BmuI ACTGGG 3 cut(s) 280, 792, 923
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 47, 293, 939
Bse118I RCCGGY 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 47, 293, 939
BseGI GGATG 3 cut(s) 562, 656, 1118
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 4 cut(s) 140, 228, 395, 474
BseRI GAGGAG 1 cut(s) 956
BseX3I CGGCCG 1 cut(s) 188
BseXI GCAGC 6 cut(s) 252, 293, 373, 385, 734, 1052
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 5 cut(s) 45, 138, 190, 496, 1131
BshNI GGYRCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 13, 695
BsiSI CCGG 2 cut(s) 102, 644
BslFI GGGAC 1 cut(s) 985
BsmAI GTCTC 3 cut(s) 938, 940, 1005
BsmBI CGTCTC 1 cut(s) 938
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 5 cut(s) 45, 138, 190, 496, 1131
Bsp1286I GDGCHC 3 cut(s) 13, 695, 819
Bsp143I GATC 5 cut(s) 420, 428, 673, 847, 1093
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 4 cut(s) 105, 150, 207, 394
BspANI GGCC 5 cut(s) 45, 138, 190, 496, 1131
BspCNI CTCAG 4 cut(s) 139, 227, 394, 473
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 100, 973
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 2 cut(s) 255, 1070
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 3 cut(s) 47, 293, 939
BssMI GATC 5 cut(s) 420, 428, 673, 847, 1093
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 4 cut(s) 731, 779, 890, 959
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 6 cut(s) 126, 140, 167, 214, 381, 460
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 3 cut(s) 562, 656, 1118
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 5 cut(s) 423, 431, 676, 850, 1096
BstMAI GTCTC 3 cut(s) 938, 940, 1005
BstMBI GATC 5 cut(s) 420, 428, 673, 847, 1093
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 105, 156
BstNI CCWGG 1 cut(s) 294
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 292, 642
BstSFI CTRYAG 2 cut(s) 839, 987
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 6 cut(s) 252, 293, 373, 385, 734, 1052
BstZI CGGCCG 1 cut(s) 188
BsuRI GGCC 5 cut(s) 45, 138, 190, 496, 1131
BtsCI GGATG 3 cut(s) 562, 656, 1118
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 3 cut(s) 522, 970, 1022
BveI ACCTGC 2 cut(s) 255, 1070
Cac8I GCNNGC 1 cut(s) 359
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 44, 972
Csp6I GTAC 5 cut(s) 640, 780, 978, 1035, 1085
CviAII CATG 7 cut(s) 95, 250, 536, 550, 577, 608, 812
CviQI GTAC 5 cut(s) 640, 780, 978, 1035, 1085
DdeI CTNAG 6 cut(s) 126, 140, 167, 214, 381, 460
DpnI GATC 5 cut(s) 422, 430, 675, 849, 1095
DpnII GATC 5 cut(s) 420, 428, 673, 847, 1093
EaeI YGGCCR 2 cut(s) 188, 494
EagI CGGCCG 1 cut(s) 188
Ecl136II GAGCTC 2 cut(s) 11, 693
EclXI CGGCCG 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 3 cut(s) 13, 695, 819
Eco47I GGWCC 1 cut(s) 972
Eco52I CGGCCG 1 cut(s) 188
Eco53kI GAGCTC 2 cut(s) 11, 693
Eco57I CTGAAG 3 cut(s) 78, 359, 702
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 2 cut(s) 11, 693
EcoO109I RGGNCCY 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 3 cut(s) 13, 695, 819
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 938
FaeI CATG 7 cut(s) 98, 253, 539, 553, 580, 611, 815
FaqI GGGAC 1 cut(s) 985
FatI CATG 7 cut(s) 94, 249, 535, 549, 576, 607, 811
FauI CCCGC 1 cut(s) 200
FbaI TGATCA 2 cut(s) 420, 847
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
FokI GGATG 3 cut(s) 569, 643, 1105
FriOI GRGCYC 3 cut(s) 13, 695, 819
Fsp4HI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
FspBI CTAG 2 cut(s) 621, 771
GlaI GCGC 1 cut(s) 397
GluI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 5 cut(s) 45, 138, 190, 496, 1131
HapII CCGG 2 cut(s) 102, 644
HhaI GCGC 1 cut(s) 398
Hin1II CATG 7 cut(s) 98, 253, 539, 553, 580, 611, 815
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 164
HindII GTYRAC 1 cut(s) 164
HinfI GANTC 2 cut(s) 388, 611
HpaII CCGG 2 cut(s) 102, 644
HphI GGTGA 3 cut(s) 45, 668, 848
Hpy166II GTNNAC 3 cut(s) 164, 368, 880
Hpy188I TCNGA 8 cut(s) 129, 217, 433, 616, 673, 690, 828, 940
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 3 cut(s) 164, 368, 880
HpyAV CCTTC 2 cut(s) 138, 551
HpyCH4III ACNGT 4 cut(s) 731, 779, 890, 959
HpyCH4IV ACGT 2 cut(s) 33, 947
HpyCH4V TGCA 7 cut(s) 240, 281, 553, 968, 989, 1049, 1112
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 156
HpyF3I CTNAG 6 cut(s) 126, 140, 167, 214, 381, 460
HpySE526I ACGT 2 cut(s) 33, 947
Hsp92II CATG 7 cut(s) 98, 253, 539, 553, 580, 611, 815
HspAI GCGC 1 cut(s) 396
Ksp22I TGATCA 2 cut(s) 420, 847
Kzo9I GATC 5 cut(s) 420, 428, 673, 847, 1093
LmnI GCTCC 2 cut(s) 16, 698
Lsp1109I GCAGC 6 cut(s) 252, 293, 373, 385, 734, 1052
LweI GCATC 4 cut(s) 55, 757, 913, 1127
MaeI CTAG 2 cut(s) 621, 771
MaeII ACGT 2 cut(s) 33, 947
MaeIII GTNAC 4 cut(s) 20, 51, 288, 773
MalI GATC 5 cut(s) 422, 430, 675, 849, 1095
MboI GATC 5 cut(s) 420, 428, 673, 847, 1093
MboII GAAGA 9 cut(s) 71, 74, 142, 176, 233, 236, 352, 609, 845
MhlI GDGCHC 3 cut(s) 13, 695, 819
MlsI TGGCCA 1 cut(s) 496
MluCI AATT 7 cut(s) 178, 445, 523, 680, 746, 869, 999
MluNI TGGCCA 1 cut(s) 496
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 824
Mox20I TGGCCA 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 601
MscI TGGCCA 1 cut(s) 496
MseI TTAA 5 cut(s) 36, 315, 408, 453, 570
Msp20I TGGCCA 1 cut(s) 496
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 102, 644
MspR9I CCNGG 2 cut(s) 294, 644
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 105, 156
NciI CCSGG 1 cut(s) 644
NdeII GATC 5 cut(s) 420, 428, 673, 847, 1093
NlaIII CATG 7 cut(s) 98, 253, 539, 553, 580, 611, 815
NlaIV GGNNCC 2 cut(s) 100, 973
NmuCI GTSAC 2 cut(s) 20, 51
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 9 cut(s) 107, 152, 242, 283, 363, 395, 400, 724, 1067
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PshBI ATTAAT 1 cut(s) 453
PsiI TTATAA 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 13, 695
Psp1406I AACGTT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 292
PspEI GGTNACC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 100, 973
PspPI GGNCC 2 cut(s) 44, 972
PsrI GAACNNNNNNTAC 2 cut(s) 772, 804
PstI CTGCAG 1 cut(s) 991
PstNI CAGNNNCTG 1 cut(s) 913
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 5 cut(s) 641, 781, 979, 1036, 1086
RsaNI GTAC 5 cut(s) 640, 780, 978, 1035, 1085
SacI GAGCTC 2 cut(s) 13, 695
SalI GTCGAC 1 cut(s) 162
SaqAI TTAA 5 cut(s) 36, 315, 408, 453, 570
SatI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
Sau3AI GATC 5 cut(s) 420, 428, 673, 847, 1093
Sau96I GGNCC 2 cut(s) 44, 972
ScaI AGTACT 2 cut(s) 979, 1036
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 294, 644
SduI GDGCHC 3 cut(s) 13, 695, 819
SfaNI GCATC 4 cut(s) 55, 757, 913, 1127
SfcI CTRYAG 2 cut(s) 839, 987
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 972
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 7 cut(s) 178, 445, 523, 680, 746, 869, 999
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 4 cut(s) 105, 150, 207, 394
SspMI CTAG 2 cut(s) 621, 771
SstI GAGCTC 2 cut(s) 13, 695
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 292, 642
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 731, 779, 890, 959
TaiI ACGT 2 cut(s) 36, 950
TaqI TCGA 3 cut(s) 87, 163, 819
TasI AATT 7 cut(s) 178, 445, 523, 680, 746, 869, 999
TatI WGTACW 2 cut(s) 977, 1034
TauI GCSGC 3 cut(s) 108, 153, 396
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 5 cut(s) 36, 315, 408, 453, 570
Tru9I TTAA 5 cut(s) 36, 315, 408, 453, 570
TscAI CASTG 3 cut(s) 522, 970, 1029
TseFI GTSAC 2 cut(s) 20, 51
TseI GCWGC 6 cut(s) 240, 281, 361, 398, 722, 1065
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 3 cut(s) 645, 800, 1071
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 3 cut(s) 522, 970, 1029
VpaK11BI GGWCC 1 cut(s) 972
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 601
XspI CTAG 2 cut(s) 621, 771
ZrmI AGTACT 2 cut(s) 979, 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.