MD15G1063300.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
4363244 .. 4364866
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1063300.v1.1.491

Sequence Viewer

Length: 1254 bp
ATGGGGAGAGCTCCTTGCTGTGATAAAGCCAACGTGAAGAGAGGTCCATGGTCACCTGAAGAAGATGCCAAGCTCAAGTCTTACATCGAGCAACATGGCACCGGCGGTAACTGGATCGCTTTGCCACAAAAGATCGGGCTTAAGAGGTGTGGGAAGAGCTGCCGGCTTAGATGGTTAAATTATCTCCGCCCAAATATCAAGCATGGAGGGTTTTCTGAAGAAGAAGACAACATAATTTGCAGCCTCTACATAAGTATTGGGAGCAGGTGGTCTATAATTGCAGCACAACTGCCAGGAAGAACTGACAATGATATAAAGAACTACTGGAACACGAGGCTGAAGAAAAAGCTTCTTGGTAGGCAGCGGAAAGAACATCAGCTAGCTCGTAAATCGGGCCTAGTTAAACAAGACATCATCAAAAGGTCAGGCGGTGTTGGGGGAAACAGTAACTCCCATTCTGGCATTCTGGCCGCAGACGGTCAAAACTCTTACTGGCCGGAGCTTCCAGTGCTTGCAGTACCCACAGTACTACCACAACAACAACAACAGCCTTGCTTTAATGACCATGCTTCTATCAGAAAGTTGCTCATCAAGCTTGGAGGGAGGTTTAGTTCTAATCATGATACTAATCAAGCTACCCAAGATAGCTCCACCGATATTCAACCAACCTTTCAAGTTCTTGATGATAATAATAACATTCCCTATGCCGCTACTGCTGTTACTCCTACTCATCAAATGGATGAGCACTATTCTGGAAAGAACATGCAAAGTCTATTAGTTCCTCGACATGGGATTCATGCTCTCAACAGTTCTTCTGCTCCTGTGGCCTTAAGCAACATTGATGTCATTAGCCCTCATCAATTTGCACAAACACATTACATGGTCAACACGGATAATATTGATGGAGCTGGTAATGGTATAATGCATAATATGTTTCAAGGGAAAGGCGGTAATTATGTGACTGATCAGCTAAAGGAGATGGCGGTGTACAACAACAACAACACTGACAACCAACAGAGATTTGATGGGATGGAGTACTTGTATGGGGATGAGATGATGATTATGAATAATAGAATTGTTAGTAGCTATGGAGAAAGTATTGGGTGGGGTGAGATGCTGGGATGTCCTCCTGTGGCCTCCTCCTCAGACGACTATAATGCCGGCATGGACCGACTGATGCCGGCCGCACCCGTCCAAGAATGTGGTTTCGCCAACGACCAGTTGATGAGTAGTTACCCTGGGGCGCCATTATAA

Protein Analysis

418

Amino Acids

46.14

Weight (kDa)

7.2

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 2.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 1.1e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 3.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1252
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 2 cut(s) 98, 1243
AciI CCGC 9 cut(s) 105, 187, 364, 429, 471, 708, 948, 983, 1185
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 3 cut(s) 468, 494, 1182
AcuI CTGAAG 3 cut(s) 78, 237, 359
AcyI GRCGYC 1 cut(s) 1244
AfaI GTAC 4 cut(s) 519, 528, 989, 1037
AfiI CCNNNNNNNGG 1 cut(s) 788
AflII CTTAAG 2 cut(s) 140, 829
AgsI TTSAA 3 cut(s) 662, 674, 938
AjnI CCWGG 2 cut(s) 292, 1237
AloI GAACNNNNNNTCC 2 cut(s) 595, 627
Alw21I GWGCWC 2 cut(s) 13, 747
AlwI GGATC 1 cut(s) 122
AoxI GGCC 6 cut(s) 394, 468, 494, 825, 1134, 1182
ApeKI GCWGC 4 cut(s) 159, 240, 281, 361
AspLEI GCGC 1 cut(s) 1246
AspS9I GGNCC 3 cut(s) 44, 394, 1168
AsuHPI GGTGA 2 cut(s) 45, 1121
AsuNHI GCTAGC 1 cut(s) 379
AvaII GGWCC 2 cut(s) 44, 1168
BanI GGYRCC 2 cut(s) 98, 1243
BanII GRGCYC 1 cut(s) 13
BauI CACGAG 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 13, 747
BbvI GCAGC 4 cut(s) 146, 252, 293, 373
BccI CCATC 5 cut(s) 165, 896, 973, 1019, 1024
BcgI CGANNNNNNTGC 2 cut(s) 1139, 1173
BciT130I CCWGG 2 cut(s) 294, 1239
BclI TGATCA 1 cut(s) 964
BfaI CTAG 2 cut(s) 380, 398
BfoI RGCGCY 1 cut(s) 1247
BfrI CTTAAG 2 cut(s) 140, 829
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 7 cut(s) 160, 241, 282, 362, 471, 708, 1185
BlsI GCNGC 7 cut(s) 161, 242, 283, 363, 472, 709, 1186
BmcAI AGTACT 2 cut(s) 528, 1037
Bme1390I CCNGG 2 cut(s) 294, 1239
Bme18I GGWCC 2 cut(s) 44, 1168
BmgT120I GGNCC 3 cut(s) 44, 394, 1168
BmiI GGNNCC 2 cut(s) 100, 1245
BmrFI CCNGG 2 cut(s) 294, 1239
BmsI GCATC 3 cut(s) 55, 1104, 1167
BmtI GCTAGC 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 627
BsaHI GRCGYC 1 cut(s) 1244
BsaJI CCNNGG 3 cut(s) 47, 1237, 1238
BsaXI ACNNNNNCTCC 6 cut(s) 434, 464, 595, 625, 1025, 1055
Bsc4I CCNNNNNNNGG 1 cut(s) 788
Bse118I RCCGGY 4 cut(s) 101, 162, 1160, 1180
Bse1I ACTGG 5 cut(s) 116, 329, 497, 506, 1219
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 2 cut(s) 294, 1239
BseDI CCNNGG 3 cut(s) 47, 1237, 1238
BseGI GGATG 4 cut(s) 745, 1035, 1054, 1127
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 788
BseMII CTCAG 1 cut(s) 1158
BseNI ACTGG 5 cut(s) 116, 329, 497, 506, 1219
BseRI GAGGAG 2 cut(s) 1129, 1132
BseX3I CGGCCG 1 cut(s) 1182
BseXI GCAGC 4 cut(s) 146, 252, 293, 373
BseYI CCCAGC 1 cut(s) 1117
Bsh1285I CGRYCG 1 cut(s) 1185
BshFI GGCC 6 cut(s) 396, 470, 496, 827, 1136, 1184
BshNI GGYRCC 2 cut(s) 98, 1243
BsiEI CGRYCG 1 cut(s) 1185
BsiHKAI GWGCWC 2 cut(s) 13, 747
BsiSI CCGG 5 cut(s) 102, 163, 497, 1161, 1181
BslI CCNNNNNNNGG 1 cut(s) 788
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 6 cut(s) 396, 470, 496, 827, 1136, 1184
Bsp1286I GDGCHC 2 cut(s) 13, 747
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 3 cut(s) 114, 132, 964
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 9 cut(s) 105, 187, 364, 429, 471, 708, 948, 983, 1185
BspANI GGCC 6 cut(s) 396, 470, 496, 827, 1136, 1184
BspCNI CTCAG 1 cut(s) 1157
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 100, 1245
BspMI ACCTGC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 149
BspT107I GGYRCC 2 cut(s) 98, 1243
BspTI CTTAAG 2 cut(s) 140, 829
BsrFI RCCGGY 4 cut(s) 101, 162, 1160, 1180
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 5 cut(s) 116, 329, 497, 506, 1219
BssAI RCCGGY 4 cut(s) 101, 162, 1160, 1180
BssECI CCNNGG 3 cut(s) 47, 1237, 1238
BssMI GATC 3 cut(s) 114, 132, 964
BssNI GRCGYC 1 cut(s) 1244
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 294, 1239
Bst4CI ACNGT 4 cut(s) 446, 479, 526, 809
Bst6I CTCTTC 2 cut(s) 32, 149
BstACI GRCGYC 1 cut(s) 1244
BstAFI CTTAAG 2 cut(s) 140, 829
BstAUI TGTACA 1 cut(s) 987
BstC8I GCNNGC 5 cut(s) 164, 381, 513, 1162, 1182
BstDEI CTNAG 2 cut(s) 167, 1144
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 4 cut(s) 745, 1035, 1054, 1127
BstH2I RGCGCY 1 cut(s) 1247
BstHHI GCGC 1 cut(s) 1246
BstKTI GATC 3 cut(s) 117, 135, 967
BstMBI GATC 3 cut(s) 114, 132, 964
BstMCI CGRYCG 1 cut(s) 1185
BstMWI GCNNNNNNNGC 4 cut(s) 508, 592, 713, 824
BstNI CCWGG 2 cut(s) 294, 1239
BstNSI RCATGY 1 cut(s) 766
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 292, 1237
BstV1I GCAGC 4 cut(s) 146, 252, 293, 373
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 1202
BstZI CGGCCG 1 cut(s) 1182
BsuRI GGCC 6 cut(s) 396, 470, 496, 827, 1136, 1184
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 4 cut(s) 745, 1035, 1054, 1127
BtsIMutI CAGTG 2 cut(s) 513, 1002
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 5 cut(s) 164, 381, 513, 1162, 1182
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 1246
Cfr10I RCCGGY 4 cut(s) 101, 162, 1160, 1180
Cfr13I GGNCC 3 cut(s) 44, 394, 1168
Csp6I GTAC 4 cut(s) 518, 527, 988, 1036
CviQI GTAC 4 cut(s) 518, 527, 988, 1036
DdeI CTNAG 2 cut(s) 167, 1144
DinI GGCGCC 1 cut(s) 1245
DpnI GATC 3 cut(s) 116, 134, 966
DpnII GATC 3 cut(s) 114, 132, 964
EaeI YGGCCR 3 cut(s) 468, 494, 1182
EagI CGGCCG 1 cut(s) 1182
Eam1104I CTCTTC 2 cut(s) 32, 149
EarI CTCTTC 2 cut(s) 32, 149
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 11
EclXI CGGCCG 1 cut(s) 1182
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 44, 1168
Eco52I CGGCCG 1 cut(s) 1182
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 78, 237, 359
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 292, 1237
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 1245
EheI GGCGCC 1 cut(s) 1245
ErhI CCWWGG 1 cut(s) 47
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 7 cut(s) 160, 241, 282, 362, 471, 708, 1185
FokI GGATG 4 cut(s) 752, 1042, 1061, 1134
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 7 cut(s) 160, 241, 282, 362, 471, 708, 1185
FspBI CTAG 2 cut(s) 380, 398
GlaI GCGC 1 cut(s) 1245
GluI GCNGC 7 cut(s) 160, 241, 282, 362, 471, 708, 1185
GsaI CCCAGC 1 cut(s) 1121
HaeII RGCGCY 1 cut(s) 1247
HaeIII GGCC 6 cut(s) 396, 470, 496, 827, 1136, 1184
HapII CCGG 5 cut(s) 102, 163, 497, 1161, 1181
HhaI GCGC 1 cut(s) 1246
Hin1I GRCGYC 1 cut(s) 1244
Hin6I GCGC 1 cut(s) 1244
HinP1I GCGC 1 cut(s) 1244
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HindIII AAGCTT 2 cut(s) 347, 593
HinfI GANTC 1 cut(s) 793
HpaII CCGG 5 cut(s) 102, 163, 497, 1161, 1181
HphI GGTGA 2 cut(s) 45, 1121
Hpy166II GTNNAC 2 cut(s) 886, 988
Hpy188I TCNGA 3 cut(s) 217, 578, 1147
Hpy188III TCNNGA 3 cut(s) 620, 680, 753
Hpy8I GTNNAC 2 cut(s) 886, 988
HpyCH4III ACNGT 4 cut(s) 446, 479, 526, 809
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 240, 281, 515, 766, 866, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 508, 592, 713, 824
HpyF3I CTNAG 2 cut(s) 167, 1144
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 1244
HspAI GCGC 1 cut(s) 1244
KasI GGCGCC 1 cut(s) 1243
KroI GCCGGC 3 cut(s) 162, 1160, 1180
KroNI GCCGGC 3 cut(s) 164, 1162, 1182
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 3 cut(s) 114, 132, 964
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 6 cut(s) 16, 261, 499, 653, 823, 905
Lsp1109I GCAGC 4 cut(s) 146, 252, 293, 373
LweI GCATC 3 cut(s) 55, 1104, 1167
MaeI CTAG 2 cut(s) 380, 398
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 6 cut(s) 51, 107, 446, 718, 958, 1232
MalI GATC 3 cut(s) 116, 134, 966
MboI GATC 3 cut(s) 114, 132, 964
MhlI GDGCHC 2 cut(s) 13, 747
MluCI AATT 6 cut(s) 178, 234, 276, 860, 952, 1074
Mly113I GGCGCC 1 cut(s) 1244
Mph1103I ATGCAT 1 cut(s) 927
MroNI GCCGGC 3 cut(s) 162, 1160, 1180
MseI TTAA 5 cut(s) 141, 176, 402, 558, 830
MspA1I CMGCKG 1 cut(s) 364
MspCI CTTAAG 2 cut(s) 140, 829
MspI CCGG 5 cut(s) 102, 163, 497, 1161, 1181
MspR9I CCNGG 2 cut(s) 294, 1239
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 2 cut(s) 294, 1239
MwoI GCNNNNNNNGC 4 cut(s) 508, 592, 713, 824
NaeI GCCGGC 3 cut(s) 164, 1162, 1182
NarI GGCGCC 1 cut(s) 1244
NcoI CCATGG 1 cut(s) 47
NdeII GATC 3 cut(s) 114, 132, 964
NgoMIV GCCGGC 3 cut(s) 162, 1160, 1180
NheI GCTAGC 1 cut(s) 379
NlaIV GGNNCC 2 cut(s) 100, 1245
NmuCI GTSAC 2 cut(s) 51, 958
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 1 cut(s) 766
PagI TCATGA 1 cut(s) 619
PaqCI CACCTGC 1 cut(s) 255
PasI CCCWGGG 1 cut(s) 1238
PciSI GCTCTTC 1 cut(s) 149
PctI GAATGC 1 cut(s) 462
PdiI GCCGGC 3 cut(s) 164, 1162, 1182
PfeI GAWTC 1 cut(s) 793
PkrI GCNGC 7 cut(s) 161, 242, 283, 363, 472, 709, 1186
PluTI GGCGCC 1 cut(s) 1247
PsiI TTATAA 1 cut(s) 1252
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 292, 1237
PspEI GGTNACC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 1117
PspGI CCWGG 2 cut(s) 292, 1237
PspN4I GGNNCC 2 cut(s) 100, 1245
PspPI GGNCC 3 cut(s) 44, 394, 1168
RsaI GTAC 4 cut(s) 519, 528, 989, 1037
RsaNI GTAC 4 cut(s) 518, 527, 988, 1036
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 5 cut(s) 141, 176, 402, 558, 830
SatI GCNGC 7 cut(s) 160, 241, 282, 362, 471, 708, 1185
Sau3AI GATC 3 cut(s) 114, 132, 964
Sau96I GGNCC 3 cut(s) 44, 394, 1168
ScaI AGTACT 2 cut(s) 528, 1037
ScrFI CCNGG 2 cut(s) 294, 1239
SduI GDGCHC 2 cut(s) 13, 747
SfaNI GCATC 3 cut(s) 55, 1104, 1167
SfoI GGCGCC 1 cut(s) 1245
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 2 cut(s) 44, 1168
SmlI CTYRAG 3 cut(s) 74, 140, 829
SmoI CTYRAG 3 cut(s) 74, 140, 829
Sse9I AATT 6 cut(s) 178, 234, 276, 860, 952, 1074
SsiI CCGC 9 cut(s) 105, 187, 364, 429, 471, 708, 948, 983, 1185
SspDI GGCGCC 1 cut(s) 1243
SspI AATATT 1 cut(s) 898
SspMI CTAG 2 cut(s) 380, 398
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 292, 1237
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 446, 479, 526, 809
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 87, 784
TaqII GACCGA 1 cut(s) 1185
TasI AATT 6 cut(s) 178, 234, 276, 860, 952, 1074
TatI WGTACW 3 cut(s) 526, 987, 1035
TauI GCSGC 3 cut(s) 473, 710, 1187
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 5 cut(s) 141, 176, 402, 558, 830
Tru9I TTAA 5 cut(s) 141, 176, 402, 558, 830
TscAI CASTG 2 cut(s) 513, 1009
TseFI GTSAC 2 cut(s) 51, 958
TseI GCWGC 4 cut(s) 159, 240, 281, 361
Tsp45I GTSAC 2 cut(s) 51, 958
TspDTI ATGAA 2 cut(s) 785, 1079
TspGWI ACGGA 1 cut(s) 905
TspRI CASTG 2 cut(s) 513, 1009
Vha464I CTTAAG 2 cut(s) 140, 829
VpaK11BI GGWCC 2 cut(s) 44, 1168
XceI RCATGY 1 cut(s) 766
XspI CTAG 2 cut(s) 380, 398
ZrmI AGTACT 2 cut(s) 528, 1037
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.