FvH4_2g32440
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
24592018 .. 24595192
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32440.t1

Sequence Viewer

Length: 1263 bp
ATGGGGAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAGAGGGCCGTGGTCACCTGAAGAAGATTCCAAGCTCAAGTCGTATATTGAACTACACGGCACTGGTGGTAACTGGATCGCTTTGCCTCAAAAGATCGGGCTTAAGAGATGTGGGAAGAGCTGCAGACTCAGATGGTTGAACTATCTGCGTCCAAACATCAAGCATGGAGGATTTTCTGAAGAAGAAGACAACTTAATTTGCAGTCTCTATATAAGTATTGGAAGCAGGTGGTCTATAATTGCAGCACAACTGCCTGGAAGAACTGATAATGATATAAAGAACTACTGGAATACAAGGCTGAAGAAAAAGCTTCTGGGAAAGCACCGCAAGGAACACCAGGCTGCTGCACGTAGATCCGCTGCAGGTCTAAAACAGCAAGAACTAATTAAGAGAGGTCTTATCATCAGTAATGGGAACAATAACTCCATGGTCAACGTCAATCCTCTTGGAGCTGATAGCCAAAATCCTTACTGGCCAGAGCTACCGGTGATCCAAGGGCCATCGATACCCAATTACTCATCACCAAACCAAGAAGTAGCAGTACCTTCTTTCAACGACCATGCGTCTATCCGAAAACTTCTTATCAAGCTCGGAGGAAGGTTTCATTCAGATCATCAAGACAATGTTGTTCAACCTAAGATCCAAGATGTGTATTCCTTGAATGTCAATATTCAACTCCCAGTTGATGATCAATTTCCTAGCTCAACGCAACAGATTTATCATGAGGAGTCTGCAGCAAATATGCACTCATCTGCTAGCCCGATTGCAACTGTTGCCAGCAACAATATCAGCAGCCCGGGCCAATTTGCACAAATGAGCGATTACAACAATCACACGGGTAATGCTGGAGATGGTGATGCTATGAACATGTTTCAAGGAGGGCAAAGTAGTCACTATCTGCTGTCGAACGAGCTCAAGGACATGGTGTACAACATTGATCGAGAAAAGTTAGATGGGCTAGAGTTCTTATACAGTGATGACATAATGATCATGATGAATGATAGACCAATTAGCAGTACTACTAGTACAAATACTAGCTATGGTACTGATCAAAGTACTATGGGGTGGAGTGGTCCTGAACAGATGCAGCTGGTTTATCCTCCTCCTCCTCTAGCGGCCTCCGGCTCAGACTATCATGAAGGCATGCAGAGATTGATAATGCCTCAAGAGCAATGCGCTAATTTCTGCGGCTTGAGTAGTTACCCTGGGGTTGGGGTACAATAA

Protein Analysis

421

Amino Acids

46.57

Weight (kDa)

6.64

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 6.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 8.2e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 4.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 2 cut(s) 255, 392
AciI CCGC 4 cut(s) 364, 396, 1154, 1227
AclWI GGATC 4 cut(s) 122, 387, 523, 673
AcoI YGGCCR 1 cut(s) 512
AcuI CTGAAG 3 cut(s) 78, 237, 359
AfaI GTAC 7 cut(s) 582, 968, 1057, 1066, 1084, 1096, 1257
AfiI CCNNNNNNNGG 1 cut(s) 1250
AflII CTTAAG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 906
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 7 cut(s) 89, 178, 592, 671, 700, 713, 914
AhdI GACNNNNNGTC 1 cut(s) 601
AhlI ACTAGT 1 cut(s) 1061
AjnI CCWGG 3 cut(s) 292, 375, 1243
AloI GAACNNNNNNTCC 2 cut(s) 446, 478
Alw21I GWGCWC 2 cut(s) 13, 954
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 4 cut(s) 122, 387, 523, 673
Ama87I CYCGRG 1 cut(s) 835
AoxI GGCC 5 cut(s) 44, 512, 536, 838, 1155
ApeKI GCWGC 8 cut(s) 159, 281, 380, 383, 398, 773, 831, 1126
AsiGI ACCGGT 1 cut(s) 523
AspLEI GCGC 1 cut(s) 1217
AspS9I GGNCC 4 cut(s) 44, 536, 838, 1112
AsuC2I CCSGG 2 cut(s) 836, 837
AsuHPI GGTGA 4 cut(s) 45, 538, 552, 905
AsuNHI GCTAGC 1 cut(s) 794
AvaI CYCGRG 1 cut(s) 835
AvaII GGWCC 1 cut(s) 1112
BalI TGGCCA 1 cut(s) 514
BanII GRGCYC 2 cut(s) 13, 954
BarI GAAGNNNNNNTAC 2 cut(s) 564, 596
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 13, 954
BbvI GCAGC 8 cut(s) 146, 293, 367, 370, 385, 785, 843, 1138
BccI CCATC 4 cut(s) 165, 547, 884, 986
BceAI ACGGC 2 cut(s) 31, 112
BciT130I CCWGG 3 cut(s) 294, 377, 1245
BclI TGATCA 3 cut(s) 727, 1026, 1087
BcnI CCSGG 2 cut(s) 836, 837
BcoDI GTCTC 1 cut(s) 248
BcuI ACTAGT 1 cut(s) 1061
BfaI CTAG 6 cut(s) 738, 795, 998, 1062, 1074, 1151
BfmI CTRYAG 3 cut(s) 160, 399, 771
BfrI CTTAAG 1 cut(s) 140
BfuAI ACCTGC 2 cut(s) 255, 392
BmcAI AGTACT 2 cut(s) 1057, 1096
Bme1390I CCNGG 5 cut(s) 294, 377, 836, 837, 1245
Bme18I GGWCC 1 cut(s) 1112
BmeRI GACNNNNNGTC 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 835
BmgT120I GGNCC 4 cut(s) 44, 536, 838, 1112
BmrFI CCNGG 5 cut(s) 294, 377, 836, 837, 1245
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 2 cut(s) 886, 1113
BmtI GCTAGC 1 cut(s) 798
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 906
BpuEI CTTGAG 4 cut(s) 59, 938, 1188, 1252
BpuMI CCSGG 2 cut(s) 836, 837
Bsa29I ATCGAT 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 6 cut(s) 47, 465, 532, 835, 1243, 1244
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 1250
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 5 cut(s) 106, 116, 329, 515, 719
Bse3DI GCAATG 1 cut(s) 1217
BseBI CCWGG 3 cut(s) 294, 377, 1245
BseCI ATCGAT 1 cut(s) 542
BseDI CCNNGG 6 cut(s) 47, 465, 532, 835, 1243, 1244
BseLI CCNNNNNNNGG 1 cut(s) 1250
BseMI GCAATG 1 cut(s) 1217
BseMII CTCAG 2 cut(s) 181, 1179
BseNI ACTGG 5 cut(s) 106, 116, 329, 515, 719
BseRI GAGGAG 4 cut(s) 779, 1131, 1134, 1137
BseXI GCAGC 8 cut(s) 146, 293, 367, 370, 385, 785, 843, 1138
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 5 cut(s) 46, 514, 538, 840, 1157
BshTI ACCGGT 1 cut(s) 523
BshVI ATCGAT 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 13, 954
BsiHKCI CYCGRG 1 cut(s) 835
BsiSI CCGG 3 cut(s) 524, 836, 1161
BslI CCNNNNNNNGG 1 cut(s) 1250
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 5 cut(s) 46, 514, 538, 840, 1157
BsoBI CYCGRG 1 cut(s) 835
Bsp1286I GDGCHC 2 cut(s) 13, 954
Bsp1407I TGTACA 1 cut(s) 966
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 4 cut(s) 364, 396, 1154, 1227
BspANI GGCC 5 cut(s) 46, 514, 538, 840, 1157
BspCNI CTCAG 2 cut(s) 180, 1178
BspDI ATCGAT 1 cut(s) 542
BspHI TCATGA 3 cut(s) 760, 1029, 1174
BspMAI CTGCAG 3 cut(s) 164, 403, 775
BspMI ACCTGC 2 cut(s) 255, 392
BspOI GCTAGC 1 cut(s) 798
BspPI GGATC 4 cut(s) 122, 387, 523, 673
BspQI GCTCTTC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 1217
BsrFI RCCGGY 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 966
BsrI ACTGG 5 cut(s) 106, 116, 329, 515, 719
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 6 cut(s) 47, 465, 532, 835, 1243, 1244
BssT1I CCWWGG 2 cut(s) 465, 532
Bst2UI CCWGG 3 cut(s) 294, 377, 1245
Bst4CI ACNGT 2 cut(s) 811, 1013
Bst6I CTCTTC 2 cut(s) 32, 149
BstAFI CTTAAG 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 812
BstAUI TGTACA 1 cut(s) 966
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 796, 817, 1184
BstDEI CTNAG 3 cut(s) 167, 675, 1165
BstDSI CCRYGG 2 cut(s) 47, 465
BstEII GGTNACC 1 cut(s) 51
BstHHI GCGC 1 cut(s) 1217
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 3 cut(s) 812, 837, 1207
BstNI CCWGG 3 cut(s) 294, 377, 1245
BstNSI RCATGY 2 cut(s) 910, 1186
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 5 cut(s) 292, 375, 834, 835, 1243
BstSFI CTRYAG 3 cut(s) 160, 399, 771
BstV1I GCAGC 8 cut(s) 146, 293, 367, 370, 385, 785, 843, 1138
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 392, 678
BstYI RGATCY 2 cut(s) 392, 678
Bsu15I ATCGAT 1 cut(s) 542
BsuRI GGCC 5 cut(s) 46, 514, 538, 840, 1157
BsuTUI ATCGAT 1 cut(s) 542
BtgI CCRYGG 2 cut(s) 47, 465
BtsIMutI CAGTG 2 cut(s) 99, 1018
BveI ACCTGC 2 cut(s) 255, 392
Cac8I GCNNGC 3 cut(s) 796, 817, 1184
CciI TCATGA 3 cut(s) 760, 1029, 1174
CfoI GCGC 1 cut(s) 1217
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 44, 536, 838, 1112
Cfr9I CCCGGG 1 cut(s) 835
ClaI ATCGAT 1 cut(s) 542
CseI GACGC 2 cut(s) 176, 591
Csp6I GTAC 7 cut(s) 581, 967, 1056, 1065, 1083, 1095, 1256
CspAI ACCGGT 1 cut(s) 523
CviAII CATG 9 cut(s) 203, 466, 599, 761, 907, 961, 1030, 1175, 1183
CviQI GTAC 7 cut(s) 581, 967, 1056, 1065, 1083, 1095, 1256
DdeI CTNAG 3 cut(s) 167, 675, 1165
DriI GACNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 2 cut(s) 32, 149
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 2 cut(s) 32, 149
Ecl136II GAGCTC 2 cut(s) 11, 952
Eco130I CCWWGG 2 cut(s) 465, 532
Eco24I GRGCYC 2 cut(s) 13, 954
Eco47I GGWCC 1 cut(s) 1112
Eco53kI GAGCTC 2 cut(s) 11, 952
Eco57I CTGAAG 3 cut(s) 78, 237, 359
Eco88I CYCGRG 1 cut(s) 835
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 2 cut(s) 11, 952
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 292, 375, 1243
EcoT14I CCWWGG 2 cut(s) 465, 532
EcoT38I GRGCYC 2 cut(s) 13, 954
ErhI CCWWGG 2 cut(s) 465, 532
FaeI CATG 9 cut(s) 206, 469, 602, 764, 910, 964, 1033, 1178, 1186
FatI CATG 9 cut(s) 202, 465, 598, 760, 906, 960, 1029, 1174, 1182
FbaI TGATCA 3 cut(s) 727, 1026, 1087
FriOI GRGCYC 2 cut(s) 13, 954
FspBI CTAG 6 cut(s) 738, 795, 998, 1062, 1074, 1151
GlaI GCGC 1 cut(s) 1216
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 5 cut(s) 46, 514, 538, 840, 1157
HapII CCGG 3 cut(s) 524, 836, 1161
HgaI GACGC 2 cut(s) 176, 591
HhaI GCGC 1 cut(s) 1217
Hin1II CATG 9 cut(s) 206, 469, 602, 764, 910, 964, 1033, 1178, 1186
Hin6I GCGC 1 cut(s) 1215
HinP1I GCGC 1 cut(s) 1215
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 65, 165, 767
HpaII CCGG 3 cut(s) 524, 836, 1161
HphI GGTGA 4 cut(s) 45, 538, 552, 905
Hpy166II GTNNAC 2 cut(s) 472, 967
Hpy188I TCNGA 6 cut(s) 170, 217, 611, 632, 649, 1168
Hpy188III TCNNGA 7 cut(s) 656, 761, 980, 1030, 1115, 1175, 1205
Hpy8I GTNNAC 2 cut(s) 472, 967
HpyAV CCTTC 3 cut(s) 594, 630, 1172
HpyCH4III ACNGT 2 cut(s) 811, 1013
HpyCH4IV ACGT 3 cut(s) 33, 388, 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 812, 837, 1207
HpyF3I CTNAG 3 cut(s) 167, 675, 1165
HpySE526I ACGT 3 cut(s) 33, 388, 474
Hsp92II CATG 9 cut(s) 206, 469, 602, 764, 910, 964, 1033, 1178, 1186
HspAI GCGC 1 cut(s) 1215
Ksp22I TGATCA 3 cut(s) 727, 1026, 1087
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 16, 488
Lsp1109I GCAGC 8 cut(s) 146, 293, 367, 370, 385, 785, 843, 1138
LweI GCATC 2 cut(s) 886, 1113
MaeI CTAG 6 cut(s) 738, 795, 998, 1062, 1074, 1151
MaeII ACGT 3 cut(s) 33, 388, 474
MaeIII GTNAC 5 cut(s) 20, 51, 107, 929, 1238
MboII GAAGA 9 cut(s) 49, 71, 74, 166, 230, 233, 236, 309, 352
MflI RGATCY 2 cut(s) 392, 678
MhlI GDGCHC 2 cut(s) 13, 954
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 8 cut(s) 234, 276, 423, 550, 731, 842, 1047, 1219
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 2 cut(s) 159, 776
Mox20I TGGCCA 1 cut(s) 514
MscI TGGCCA 1 cut(s) 514
MseI TTAA 3 cut(s) 141, 233, 426
Msp20I TGGCCA 1 cut(s) 514
MspA1I CMGCKG 2 cut(s) 398, 1129
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 3 cut(s) 524, 836, 1161
MspR9I CCNGG 5 cut(s) 294, 377, 836, 837, 1245
MvaI CCWGG 3 cut(s) 294, 377, 1245
MwoI GCNNNNNNNGC 3 cut(s) 812, 837, 1207
NciI CCSGG 2 cut(s) 836, 837
NcoI CCATGG 1 cut(s) 465
NheI GCTAGC 1 cut(s) 794
NlaIII CATG 9 cut(s) 206, 469, 602, 764, 910, 964, 1033, 1178, 1186
NmuCI GTSAC 3 cut(s) 20, 51, 929
NspI RCATGY 2 cut(s) 910, 1186
PaeI GCATGC 1 cut(s) 1186
PagI TCATGA 3 cut(s) 760, 1029, 1174
PaqCI CACCTGC 1 cut(s) 255
PasI CCCWGGG 1 cut(s) 1244
PciI ACATGT 1 cut(s) 906
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 65
PinAI ACCGGT 1 cut(s) 523
PleI GAGTC 2 cut(s) 159, 775
PpsI GAGTC 2 cut(s) 159, 775
Ppu21I YACGTR 1 cut(s) 389
PscI ACATGT 1 cut(s) 906
Psp124BI GAGCTC 2 cut(s) 13, 954
Psp6I CCWGG 3 cut(s) 292, 375, 1243
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 3 cut(s) 292, 375, 1243
PspPI GGNCC 4 cut(s) 44, 536, 838, 1112
PstI CTGCAG 3 cut(s) 164, 403, 775
PsuI RGATCY 2 cut(s) 392, 678
PvuII CAGCTG 1 cut(s) 1129
RsaI GTAC 7 cut(s) 582, 968, 1057, 1066, 1084, 1096, 1257
RsaNI GTAC 7 cut(s) 581, 967, 1056, 1065, 1083, 1095, 1256
SacI GAGCTC 2 cut(s) 13, 954
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 3 cut(s) 141, 233, 426
Sau96I GGNCC 4 cut(s) 44, 536, 838, 1112
ScaI AGTACT 2 cut(s) 1057, 1096
SchI GAGTC 2 cut(s) 159, 776
ScrFI CCNGG 5 cut(s) 294, 377, 836, 837, 1245
SduI GDGCHC 2 cut(s) 13, 954
SfaNI GCATC 2 cut(s) 886, 1113
SfcI CTRYAG 3 cut(s) 160, 399, 771
SinI GGWCC 1 cut(s) 1112
SmaI CCCGGG 1 cut(s) 837
SmlI CTYRAG 5 cut(s) 74, 140, 953, 1203, 1231
SmoI CTYRAG 5 cut(s) 74, 140, 953, 1203, 1231
SpeI ACTAGT 1 cut(s) 1061
SphI GCATGC 1 cut(s) 1186
SrfI GCCCGGGC 1 cut(s) 837
Sse9I AATT 8 cut(s) 234, 276, 423, 550, 731, 842, 1047, 1219
SsiI CCGC 4 cut(s) 364, 396, 1154, 1227
SspI AATATT 1 cut(s) 709
SspMI CTAG 6 cut(s) 738, 795, 998, 1062, 1074, 1151
SstI GAGCTC 2 cut(s) 13, 954
StyD4I CCNGG 5 cut(s) 292, 375, 834, 835, 1243
StyI CCWWGG 2 cut(s) 465, 532
TaaI ACNGT 2 cut(s) 811, 1013
TaiI ACGT 3 cut(s) 36, 391, 477
TaqI TCGA 3 cut(s) 542, 944, 979
TasI AATT 8 cut(s) 234, 276, 423, 550, 731, 842, 1047, 1219
TatI WGTACW 4 cut(s) 966, 1055, 1064, 1094
TauI GCSGC 2 cut(s) 1157, 1230
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 141, 233, 426
Tru9I TTAA 3 cut(s) 141, 233, 426
TscAI CASTG 2 cut(s) 106, 1018
TseFI GTSAC 3 cut(s) 20, 51, 929
TseI GCWGC 8 cut(s) 159, 281, 380, 383, 398, 773, 831, 1126
Tsp45I GTSAC 3 cut(s) 20, 51, 929
TspDTI ATGAA 4 cut(s) 632, 917, 1049, 1191
TspMI CCCGGG 1 cut(s) 835
TspRI CASTG 2 cut(s) 106, 1018
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 1112
XceI RCATGY 2 cut(s) 910, 1186
XmaI CCCGGG 1 cut(s) 835
XspI CTAG 6 cut(s) 738, 795, 998, 1062, 1074, 1151
ZrmI AGTACT 2 cut(s) 1057, 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.