Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003649

Physical Location & Seq

Genomic Coordinates Forward (+)

26322817 .. 26324609

Gene Structure 1793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCTCCTGAGGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCACAGGAGGCAACTGGATTGCTTTGCCTCAGAAAATTGGTTTAAGGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGCTCAACTATTTGAGACCAAACATCAAACATGGTGGCTTCTCCGAGGAAGAAGACAACATCATTTGTAACCTCTATGTTACTATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGGGAAGAACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTGAACAAACAAAGGAAAGAGTTCCAAGAAGCGCGAATGAAGCAAGAGATGGTGATGATGAAAAGGCAACAACAAGGACAAGGACAAGGTCAAAGTAATGGTAGTACGGATCTTTATCTTAACAACATGTTTGGATCATCACCATGGCCATTACTACCACAACTTCCTCCTCCACATCATCAAATACCTCTTGGAATGATGGAACCAACAAGCTGTAACTACTACCAAACGACACCGTCTTGTAACCTAGAACAAAAGCCATTGATCACACTCAAGAACATGGTCAAGATTGAAGAAGAACAGGAAAGGACAAACCCTGATCATCATCATCAAGATTCTGTCACAAACCCTTTTGATTTCTCTTTCTCTCAGCTTTTGTTAGATCCCAATTACTATCTGGGATCAGGAGGGGGAGGAGAAGGAGATTTTGCTATCATGAGCAGCAGCACAAACTCACCATTACCAAACACAAGTAGTGATCAACATCCAAGTCAACAGCAAGAGATTCTTCAATGGTTTGGGAGCAGTAACTTTCAGACAGAAGCAATCAACGATATGTTCATAAACAACAACAACAACATAGTGAATCTTGAGACCATCGAGAACACAAAAGTCTATGGAGACGCCTCAGTAGCCGGAGCCGCTGTCCGAGCAGCTTTGGGCGGAGGGACAACGAGTACATCGGCGGATCAAAGTACAATAAGTTGGGAGGATATAACTTCTCTAGTTAATTCCGAAGATGCAAGTTACTTCAATGCGCCAAATCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

374

Amino Acids

41.84

Weight (kDa)

5.8

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	2.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 112	4.3e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	4.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49690 AT5G65790
fragaria_vesca	FvH4_1g18500 FvH4_1g18500 FvH4_2g32440
malus_domestica	MD02G1191000.v1.1 MD08G1076200.v1.1 MD15G1063300.v1.1 MD15G1302300.v1.1
prunus_persica	Prupe.1G417400_v2.0.a1 Prupe.6G214300_v2.0.a1
pyrus_communis	pycom02g15540 pycom08g06310 pycom15g06010 pycom15g26540
rosa_chinensis	RchiOBHm_Chr2g0109131 RchiOBHm_Chr6g0310231
rosa_laevigata	RLG00000010497 RLG00000017715
rosa_multiflora	Rmu_sc0000186.1_g000014 Rmu_sc0002348.1_g000027
rosa_roxburghii	Rroxscaffold_2G00134480 Rroxscaffold_7G00158720
rosa_rugosa	Rorug02G0157300 Rorug06G0378300 Rorug06G0378400
rosa_samantha	Rh2AG209400 Rh2BG219800 Rh2CG211900 Rh2DG215500 Rh6AG492500 Rh6BG502200 Rh6CG507100 Rh6DG493300
rosa_wichuraiana	Rw6G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccII	CGCG	1 cut(s)	385
AciI	CCGC	3 cut(s)	993, 1014, 1037
AclWI	GGATC	5 cut(s)	468, 493, 728, 760, 1047
AcoI	YGGCCR	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	2 cut(s)	66, 975
AfaI	GTAC	3 cut(s)	457, 1030, 1048
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	3 cut(s)	644, 863, 1105
AluBI	AGCT	4 cut(s)	349, 564, 724, 1007
AluI	AGCT	4 cut(s)	349, 564, 724, 1007
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	4 cut(s)	57, 181, 938, 966
AlwI	GGATC	5 cut(s)	468, 493, 728, 760, 1047
AoxI	GGCC	3 cut(s)	27, 44, 497
ApeKI	GCWGC	4 cut(s)	281, 792, 795, 1004
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	385, 1111
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	415, 483, 798
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	499
BauI	CACGAG	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	69, 231
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	268, 804, 807, 1016
BccI	CCATC	3 cut(s)	394, 544, 956
BclI	TGATCA	3 cut(s)	615, 670, 829
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	4 cut(s)	57, 181, 938, 966
BfaI	CTAG	2 cut(s)	599, 1076
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	5 cut(s)	282, 793, 796, 993, 1005
BlsI	GCNGC	5 cut(s)	283, 794, 797, 994, 1006
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	555, 991
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	1081
BpiI	GAAGAC	2 cut(s)	69, 231
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	608, 962
BpuMI	CCSGG	1 cut(s)	294
BsaBI	GATNNNNATC	3 cut(s)	465, 675, 834
BsaHI	GRCGYC	2 cut(s)	66, 975
BsaI	GGTCTC	3 cut(s)	57, 181, 938
BsaJI	CCNNGG	3 cut(s)	47, 216, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	981, 1011
Bse1I	ACTGG	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	3 cut(s)	465, 675, 834
BseDI	CCNNGG	3 cut(s)	47, 216, 494
BseGI	GGATG	1 cut(s)	835
BseJI	GATNNNNATC	3 cut(s)	465, 675, 834
BseMII	CTCAG	4 cut(s)	48, 140, 734, 993
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	510, 780
BseXI	GCAGC	4 cut(s)	268, 804, 807, 1016
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	3 cut(s)	29, 46, 499
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	293, 987
BslFI	GGGAC	1 cut(s)	1033
BsmAI	GTCTC	4 cut(s)	57, 181, 938, 966
BsmBI	CGTCTC	1 cut(s)	966
BsmFI	GGGAC	1 cut(s)	1033
BsnI	GGCC	3 cut(s)	29, 46, 499
Bso31I	GGTCTC	3 cut(s)	57, 181, 938
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	8 cut(s)	460, 485, 615, 670, 733, 752, 829, 1039
Bsp19I	CCATGG	1 cut(s)	494
BspACI	CCGC	3 cut(s)	993, 1014, 1037
BspANI	GGCC	3 cut(s)	29, 46, 499
BspCNI	CTCAG	4 cut(s)	49, 139, 733, 992
BspFNI	CGCG	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	786
BspLI	GGNNCC	2 cut(s)	555, 991
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	5 cut(s)	468, 493, 728, 760, 1047
BspTNI	GGTCTC	3 cut(s)	57, 181, 938
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	47, 216, 494
BssMI	GATC	8 cut(s)	460, 485, 615, 670, 733, 752, 829, 1039
BssNI	GRCGYC	2 cut(s)	66, 975
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	2 cut(s)	47, 494
Bst2BI	CACGAG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	15, 588
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	2 cut(s)	66, 975
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	5 cut(s)	57, 126, 167, 720, 979
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	835
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	2 cut(s)	385, 1111
BstKTI	GATC	8 cut(s)	463, 488, 618, 673, 736, 755, 832, 1042
BstMAI	GTCTC	4 cut(s)	57, 181, 938, 966
BstMBI	GATC	8 cut(s)	460, 485, 615, 670, 733, 752, 829, 1039
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 172, 391, 983, 992, 1001
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	4 cut(s)	268, 804, 807, 1016
BstV2I	GAAGAC	2 cut(s)	69, 231
BstX2I	RGATCY	2 cut(s)	460, 733
BstYI	RGATCY	2 cut(s)	460, 733
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	29, 46, 499
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	835
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	2 cut(s)	385, 1111
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	2 cut(s)	74, 983
Csp6I	GTAC	3 cut(s)	456, 1029, 1047
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	6 cut(s)	203, 478, 495, 631, 787, 1118
CviQI	GTAC	3 cut(s)	456, 1029, 1047
DdeI	CTNAG	5 cut(s)	57, 126, 167, 720, 979
DpnI	GATC	8 cut(s)	462, 487, 617, 672, 735, 754, 831, 1041
DpnII	GATC	8 cut(s)	460, 485, 615, 670, 733, 752, 829, 1039
EaeI	YGGCCR	1 cut(s)	497
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	2 cut(s)	1029, 1052
Eco130I	CCWWGG	2 cut(s)	47, 494
Eco31I	GGTCTC	3 cut(s)	57, 181, 938
Eco32I	GATATC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	47, 494
ErhI	CCWWGG	2 cut(s)	47, 494
Esp3I	CGTCTC	1 cut(s)	966
FaeI	CATG	6 cut(s)	206, 481, 498, 634, 790, 1121
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	1 cut(s)	1033
FatI	CATG	6 cut(s)	202, 477, 494, 630, 786, 1117
FbaI	TGATCA	3 cut(s)	615, 670, 829
Fnu4HI	GCNGC	5 cut(s)	282, 793, 796, 993, 1005
FokI	GGATG	1 cut(s)	822
Fsp4HI	GCNGC	5 cut(s)	282, 793, 796, 993, 1005
FspBI	CTAG	2 cut(s)	599, 1076
GlaI	GCGC	2 cut(s)	384, 1110
GluI	GCNGC	5 cut(s)	282, 793, 796, 993, 1005
HaeIII	GGCC	3 cut(s)	29, 46, 499
HapII	CCGG	2 cut(s)	293, 987
HgaI	GACGC	2 cut(s)	74, 983
HhaI	GCGC	2 cut(s)	385, 1111
Hin1I	GRCGYC	2 cut(s)	66, 975
Hin1II	CATG	6 cut(s)	206, 481, 498, 634, 790, 1121
Hin6I	GCGC	2 cut(s)	383, 1109
HinP1I	GCGC	2 cut(s)	383, 1109
HincII	GTYRAC	1 cut(s)	845
HindII	GTYRAC	1 cut(s)	845
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	686, 856, 937
HpaII	CCGG	2 cut(s)	293, 987
HphI	GGTGA	3 cut(s)	415, 483, 798
Hpy166II	GTNNAC	1 cut(s)	845
Hpy188I	TCNGA	6 cut(s)	129, 217, 354, 888, 1001, 1087
Hpy188III	TCNNGA	9 cut(s)	56, 88, 625, 637, 683, 756, 787, 941, 952
Hpy8I	GTNNAC	1 cut(s)	845
HpyAV	CCTTC	1 cut(s)	764
HpyCH4III	ACNGT	2 cut(s)	15, 588
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	162, 284, 1094
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 172, 391, 983, 992, 1001
HpyF3I	CTNAG	5 cut(s)	57, 126, 167, 720, 979
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	2 cut(s)	66, 975
Hsp92II	CATG	6 cut(s)	206, 481, 498, 634, 790, 1121
HspAI	GCGC	2 cut(s)	383, 1109
Ksp22I	TGATCA	3 cut(s)	615, 670, 829
Kzo9I	GATC	8 cut(s)	460, 485, 615, 670, 733, 752, 829, 1039
LmnI	GCTCC	2 cut(s)	873, 989
Lsp1109I	GCAGC	4 cut(s)	268, 804, 807, 1016
LweI	GCATC	1 cut(s)	1081
MaeI	CTAG	2 cut(s)	599, 1076
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	7 cut(s)	239, 250, 566, 593, 691, 878, 1097
MalI	GATC	8 cut(s)	462, 487, 617, 672, 735, 754, 831, 1041
MboI	GATC	8 cut(s)	460, 485, 615, 670, 733, 752, 829, 1039
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	2 cut(s)	460, 733
MhlI	GDGCHC	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	499
MluCI	AATT	5 cut(s)	132, 276, 287, 739, 1081
MluNI	TGGCCA	1 cut(s)	499
Mox20I	TGGCCA	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	499
MseI	TTAA	3 cut(s)	140, 471, 1080
MslI	CAYNNNNRTG	1 cut(s)	493
Msp20I	TGGCCA	1 cut(s)	499
MspA1I	CMGCKG	1 cut(s)	995
MspI	CCGG	2 cut(s)	293, 987
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	6 cut(s)	105, 172, 391, 983, 992, 1001
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	494
NdeII	GATC	8 cut(s)	460, 485, 615, 670, 733, 752, 829, 1039
NlaIII	CATG	6 cut(s)	206, 481, 498, 634, 790, 1121
NlaIV	GGNNCC	2 cut(s)	555, 991
NmuCI	GTSAC	1 cut(s)	691
NspI	RCATGY	1 cut(s)	481
PagI	TCATGA	1 cut(s)	786
PaqCI	CACCTGC	1 cut(s)	255
PciI	ACATGT	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	3 cut(s)	686, 856, 937
PflFI	GACNNNGTC	2 cut(s)	438, 586
PkrI	GCNGC	5 cut(s)	283, 794, 797, 994, 1006
PscI	ACATGT	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	555, 991
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	460, 733
PsyI	GACNNNGTC	2 cut(s)	438, 586
RsaI	GTAC	3 cut(s)	457, 1030, 1048
RsaNI	GTAC	3 cut(s)	456, 1029, 1047
RseI	CAYNNNNRTG	1 cut(s)	493
SaqAI	TTAA	3 cut(s)	140, 471, 1080
SatI	GCNGC	5 cut(s)	282, 793, 796, 993, 1005
Sau3AI	GATC	8 cut(s)	460, 485, 615, 670, 733, 752, 829, 1039
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	1081
SmiMI	CAYNNNNRTG	1 cut(s)	493
SmlI	CTYRAG	2 cut(s)	623, 941
SmoI	CTYRAG	2 cut(s)	623, 941
Sse9I	AATT	5 cut(s)	132, 276, 287, 739, 1081
SsiI	CCGC	3 cut(s)	993, 1014, 1037
SspMI	CTAG	2 cut(s)	599, 1076
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	47, 494
TaaI	ACNGT	2 cut(s)	15, 588
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	87, 951
TasI	AATT	5 cut(s)	132, 276, 287, 739, 1081
TatI	WGTACW	2 cut(s)	1028, 1046
TauI	GCSGC	1 cut(s)	995
TfiI	GAWTC	3 cut(s)	686, 856, 937
Tru1I	TTAA	3 cut(s)	140, 471, 1080
Tru9I	TTAA	3 cut(s)	140, 471, 1080
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	4 cut(s)	281, 792, 795, 1004
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	3 cut(s)	404, 425, 901
TspGWI	ACGGA	1 cut(s)	473
Tth111I	GACNNNGTC	2 cut(s)	438, 586
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	2 cut(s)	599, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.