MD15G1302300.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
29254178 .. 29255562
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1302300.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGGGCAGAGCTCCTTGCTGTGACAAAGCCAACGTTAAGAAAGGCCCTTGGTCACCTGAAGAAGATGCTACACTCAAGGCTTATATCGAGAAGCATGGCACCGGCGGCAACTGGATTACCTTACCTCAGAAGATAGGCCTTAGAAGGTGCGGCAAAAGCTGTCGACTTAGATGGTTGAATTATCTACGGCCGAATATCAAGCACGGCGGGTTCTCAGAGGAAGAAGATAACATCATTTGCAGCCTCTACATGAGTATTGGAAGCAGGTGGTCTATCATTGCAGCCCAGTTACCAGGGCGAACGGACAACGATATTAAGAACTACTGGAACACAAGGCTGAAGAAAAAGCTCTTGGGCAAGCAGCGTAAACAACAGGAGGCTCAGCAGAGTCGCCGCGCTGCCATCTTTAAGCAAGAGATGATCAAAAGATCAGAAAATAATGCAAATTTTGTTAATATCTCTGCTGGGTTTTTCAACCAAAACCCTTATAACTGGCCAGAGCTACCAGTAGTGCCAGTGGCTAATTATCAAACACATGACCCTCAACTCATGCAGGATGAGGCTTCCATTAAGACTATGCTCATCAATCTTGGAGGAAGATTTTCCCATGATTCTGACACTAGCACCACAAGTTTTCAGTACCCAGTTGATATTTCGTCCACCTCGTCATCAGATCACCAATTCTATCAGAGCTCCATTGATGTTCTTGCTTCTACTTCAGCAGCCAACAGTAATAACTATTCTCAATTTCCAAGCACAAACTTTGATGCTAGTAACGGTACTGGGGGTTCAAGTAGTCCAACCATATTTCATGGGCTGGACGATCAGAATAACAATCTACAGGCTGATCATCTTAACCAGCTAACTGAATTGGAGGTTTACGACAACAGTTTTGCTCATCAGCATCAGCAACTGGGTGGTTTTTATTATCAAGCCTCCGAGGAGACGTTGAACAACGGTAGCAGTGCAGGGACCAGTACTGCTTCTGCAGAGAGTGAAATTAGTTGGGGAGACATAAACTCACTGGTTTATAGTACTCAAATGGTTGCAGACTATGAAACCTGCTGCCAACAAGCAGTAGTAGTACCACAAGATCAACATTCTTTTTTTGCAGAGGCAACCTACTTTGGCCTCAAATAA

Protein Analysis

380

Amino Acids

42.33

Weight (kDa)

5.81

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 5.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 3.5e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 120 1.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 2 cut(s) 255, 1070
AccB1I GGYRCC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 163
AccII CGCG 1 cut(s) 396
AciI CCGC 4 cut(s) 105, 150, 207, 394
AclI AACGTT 1 cut(s) 33
AcoI YGGCCR 2 cut(s) 188, 494
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 3 cut(s) 78, 359, 702
AfaI GTAC 5 cut(s) 641, 781, 979, 1036, 1086
AgsI TTSAA 4 cut(s) 178, 475, 792, 952
AjnI CCWGG 1 cut(s) 292
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 6 cut(s) 11, 159, 349, 502, 693, 862
AluI AGCT 6 cut(s) 11, 159, 349, 502, 693, 862
Alw21I GWGCWC 2 cut(s) 13, 695
Alw26I GTCTC 2 cut(s) 938, 1005
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 5 cut(s) 43, 136, 188, 494, 1129
ApeKI GCWGC 6 cut(s) 240, 281, 361, 398, 722, 1065
ApoI RAATTY 1 cut(s) 445
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
Asp700I GAANNNNTTC 1 cut(s) 601
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 44, 972
AsuHPI GGTGA 2 cut(s) 45, 668
AvaII GGWCC 1 cut(s) 972
BalI TGGCCA 1 cut(s) 496
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 2 cut(s) 13, 695
Bbv12I GWGCWC 2 cut(s) 13, 695
BbvI GCAGC 6 cut(s) 252, 293, 373, 385, 734, 1052
BccI CCATC 2 cut(s) 165, 410
BceAI ACGGC 2 cut(s) 203, 220
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 2 cut(s) 420, 847
BcoDI GTCTC 2 cut(s) 938, 1005
BfaI CTAG 2 cut(s) 621, 771
BfmI CTRYAG 2 cut(s) 839, 987
BfuAI ACCTGC 2 cut(s) 255, 1070
BisI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 9 cut(s) 107, 152, 242, 283, 363, 395, 400, 724, 1067
BmcAI AGTACT 2 cut(s) 979, 1036
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 972
BmgT120I GGNCC 2 cut(s) 44, 972
BmiI GGNNCC 2 cut(s) 100, 973
BmrFI CCNGG 1 cut(s) 294
BmrI ACTGGG 4 cut(s) 280, 638, 792, 923
BmsI GCATC 3 cut(s) 55, 757, 913
BmuI ACTGGG 4 cut(s) 280, 638, 792, 923
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 47, 293, 939
Bse118I RCCGGY 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 47, 293, 939
BseGI GGATG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 140, 228, 395
BseRI GAGGAG 1 cut(s) 956
BseX3I CGGCCG 1 cut(s) 188
BseXI GCAGC 6 cut(s) 252, 293, 373, 385, 734, 1052
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 5 cut(s) 45, 138, 190, 496, 1131
BshNI GGYRCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 13, 695
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 985
BsmAI GTCTC 2 cut(s) 938, 1005
BsmBI CGTCTC 1 cut(s) 938
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 5 cut(s) 45, 138, 190, 496, 1131
Bsp1286I GDGCHC 2 cut(s) 13, 695
Bsp143I GATC 6 cut(s) 420, 428, 673, 823, 847, 1093
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 4 cut(s) 105, 150, 207, 394
BspANI GGCC 5 cut(s) 45, 138, 190, 496, 1131
BspCNI CTCAG 3 cut(s) 139, 227, 394
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 100, 973
BspMAI CTGCAG 1 cut(s) 991
BspMI ACCTGC 2 cut(s) 255, 1070
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 3 cut(s) 47, 293, 939
BssMI GATC 6 cut(s) 420, 428, 673, 823, 847, 1093
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 4 cut(s) 731, 779, 890, 959
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 5 cut(s) 126, 140, 167, 214, 381
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 6 cut(s) 423, 431, 676, 826, 850, 1096
BstMAI GTCTC 2 cut(s) 938, 1005
BstMBI GATC 6 cut(s) 420, 428, 673, 823, 847, 1093
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 105, 156
BstNI CCWGG 1 cut(s) 294
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 2 cut(s) 839, 987
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 6 cut(s) 252, 293, 373, 385, 734, 1052
BstZI CGGCCG 1 cut(s) 188
BsuRI GGCC 5 cut(s) 45, 138, 190, 496, 1131
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 3 cut(s) 522, 970, 1022
BveI ACCTGC 2 cut(s) 255, 1070
Cac8I GCNNGC 1 cut(s) 359
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 44, 972
Csp6I GTAC 5 cut(s) 640, 780, 978, 1035, 1085
CviAII CATG 6 cut(s) 95, 250, 536, 550, 608, 812
CviQI GTAC 5 cut(s) 640, 780, 978, 1035, 1085
DdeI CTNAG 5 cut(s) 126, 140, 167, 214, 381
DpnI GATC 6 cut(s) 422, 430, 675, 825, 849, 1095
DpnII GATC 6 cut(s) 420, 428, 673, 823, 847, 1093
EaeI YGGCCR 2 cut(s) 188, 494
EagI CGGCCG 1 cut(s) 188
Ecl136II GAGCTC 2 cut(s) 11, 693
EclXI CGGCCG 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 2 cut(s) 13, 695
Eco47I GGWCC 1 cut(s) 972
Eco52I CGGCCG 1 cut(s) 188
Eco53kI GAGCTC 2 cut(s) 11, 693
Eco57I CTGAAG 3 cut(s) 78, 359, 702
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 2 cut(s) 11, 693
EcoO109I RGGNCCY 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 13, 695
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 938
FaeI CATG 6 cut(s) 98, 253, 539, 553, 611, 815
FaqI GGGAC 1 cut(s) 985
FatI CATG 6 cut(s) 94, 249, 535, 549, 607, 811
FauI CCCGC 1 cut(s) 200
FbaI TGATCA 2 cut(s) 420, 847
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 2 cut(s) 13, 695
Fsp4HI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
FspBI CTAG 2 cut(s) 621, 771
GlaI GCGC 1 cut(s) 397
GluI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 5 cut(s) 45, 138, 190, 496, 1131
HapII CCGG 1 cut(s) 102
HhaI GCGC 1 cut(s) 398
Hin1II CATG 6 cut(s) 98, 253, 539, 553, 611, 815
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 164
HindII GTYRAC 1 cut(s) 164
HinfI GANTC 2 cut(s) 388, 611
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 45, 668
Hpy166II GTNNAC 4 cut(s) 164, 368, 660, 880
Hpy188I TCNGA 8 cut(s) 129, 217, 433, 616, 673, 690, 828, 940
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 4 cut(s) 164, 368, 660, 880
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 4 cut(s) 731, 779, 890, 959
HpyCH4IV ACGT 2 cut(s) 33, 947
HpyCH4V TGCA 8 cut(s) 240, 281, 443, 553, 968, 989, 1049, 1112
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 156
HpyF3I CTNAG 5 cut(s) 126, 140, 167, 214, 381
HpySE526I ACGT 2 cut(s) 33, 947
Hsp92II CATG 6 cut(s) 98, 253, 539, 553, 611, 815
HspAI GCGC 1 cut(s) 396
Ksp22I TGATCA 2 cut(s) 420, 847
Kzo9I GATC 6 cut(s) 420, 428, 673, 823, 847, 1093
LmnI GCTCC 2 cut(s) 16, 698
Lsp1109I GCAGC 6 cut(s) 252, 293, 373, 385, 734, 1052
LweI GCATC 3 cut(s) 55, 757, 913
MaeI CTAG 2 cut(s) 621, 771
MaeII ACGT 2 cut(s) 33, 947
MaeIII GTNAC 4 cut(s) 20, 51, 288, 773
MalI GATC 6 cut(s) 422, 430, 675, 825, 849, 1095
MboI GATC 6 cut(s) 420, 428, 673, 823, 847, 1093
MboII GAAGA 7 cut(s) 71, 74, 142, 233, 236, 352, 609
MhlI GDGCHC 2 cut(s) 13, 695
MlsI TGGCCA 1 cut(s) 496
MluCI AATT 7 cut(s) 178, 445, 523, 680, 746, 869, 999
MluNI TGGCCA 1 cut(s) 496
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 824
Mox20I TGGCCA 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 601
MscI TGGCCA 1 cut(s) 496
MseI TTAA 6 cut(s) 36, 315, 408, 453, 570, 855
Msp20I TGGCCA 1 cut(s) 496
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 105, 156
NdeII GATC 6 cut(s) 420, 428, 673, 823, 847, 1093
NlaIII CATG 6 cut(s) 98, 253, 539, 553, 611, 815
NlaIV GGNNCC 2 cut(s) 100, 973
NmuCI GTSAC 2 cut(s) 20, 51
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 9 cut(s) 107, 152, 242, 283, 363, 395, 400, 724, 1067
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PsiI TTATAA 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 13, 695
Psp1406I AACGTT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 292
PspEI GGTNACC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 100, 973
PspPI GGNCC 2 cut(s) 44, 972
PsrI GAACNNNNNNTAC 2 cut(s) 772, 804
PstI CTGCAG 1 cut(s) 991
PstNI CAGNNNCTG 1 cut(s) 913
RsaI GTAC 5 cut(s) 641, 781, 979, 1036, 1086
RsaNI GTAC 5 cut(s) 640, 780, 978, 1035, 1085
SacI GAGCTC 2 cut(s) 13, 695
SalI GTCGAC 1 cut(s) 162
SaqAI TTAA 6 cut(s) 36, 315, 408, 453, 570, 855
SatI GCNGC 9 cut(s) 106, 151, 241, 282, 362, 394, 399, 723, 1066
Sau3AI GATC 6 cut(s) 420, 428, 673, 823, 847, 1093
Sau96I GGNCC 2 cut(s) 44, 972
ScaI AGTACT 2 cut(s) 979, 1036
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 2 cut(s) 13, 695
SfaNI GCATC 3 cut(s) 55, 757, 913
SfcI CTRYAG 2 cut(s) 839, 987
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 972
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 7 cut(s) 178, 445, 523, 680, 746, 869, 999
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 4 cut(s) 105, 150, 207, 394
SspMI CTAG 2 cut(s) 621, 771
SstI GAGCTC 2 cut(s) 13, 695
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 731, 779, 890, 959
TaiI ACGT 2 cut(s) 36, 950
TaqI TCGA 2 cut(s) 87, 163
TasI AATT 7 cut(s) 178, 445, 523, 680, 746, 869, 999
TatI WGTACW 2 cut(s) 977, 1034
TauI GCSGC 3 cut(s) 108, 153, 396
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 6 cut(s) 36, 315, 408, 453, 570, 855
Tru9I TTAA 6 cut(s) 36, 315, 408, 453, 570, 855
TscAI CASTG 3 cut(s) 522, 970, 1029
TseFI GTSAC 2 cut(s) 20, 51
TseI GCWGC 6 cut(s) 240, 281, 361, 398, 722, 1065
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 2 cut(s) 800, 1071
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 3 cut(s) 522, 970, 1029
VpaK11BI GGWCC 1 cut(s) 972
XapI RAATTY 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 601
XspI CTAG 2 cut(s) 621, 771
ZrmI AGTACT 2 cut(s) 979, 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.