RLG00000010497
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
2131199 .. 2133128
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010497

Sequence Viewer

Length: 1116 bp
ATGGATGGGCTTAAGAGATGTGGGAAGAGCTGCCGGCTGAGATGGTTAAACTATCTGCGCCCGAACATCAAGCATGGAGGGTTTTCTGAAGAAGAGGACAACTTAATTTGCAGCCTCTATATAAGTATTGGAAGCAGGTGGTCTATAATTGCAGCACAACTGCCTGGAAGAACTGATAATGATATAAAGAACTACTGGAACACAAGGCTGAAGAAAAAGCTTCTGGGAAAGCACCGCAAGGAACACCATGCTGCGGCGCGTAGATCCGCTGCAGGTCTAAAACAGCAAGAAATTATCAAAAGAGGTCTCATCATCAGTAGTAGTAGTGGGAACAATAATTCCATGGTGAATCCTGTGGCAGCAGCTAGCCAAAACCCTTACTGGCCCGAGCTACCAGTGCTCCAAGTACCATCGATACCCAATTACTCACCACCAAACCAAGAAGTAGTAGTACCTTCTTTCAATGACCATGCGTCTATCCGAAAACTGCTTATCAAGCTCGGAGGAAGATTTCATTCAGATCATCACGACAATGTTGCTCAACCTAATATCCAAGGTGTGTATTCCTCGAATGGCGATATTCAACTCCCAGTTGATCAATTTCCTAGCTCAACGCAACAGATTTATCACGAGGAGTCGGCAGCCAATATGCACTCATCTGGTAGCCTGATTGCGGCTTTAGCCAGTAACAATATCAGCAACCCGGGCCAATTTGCACAAATGAACCATTACAACAACCTTGCGTATAATGCTGGATATGGTGGTGCTGTGAACATGTTTCAAGGAGGGCAAAGTAGTAACTATTTTCTGTCGAACGAGCTTAAGGACATGGTGTACAATATTGATCCAGAAAAGTTAGATGGGCTGGAGTTCTTGTACAGTGAAGACGTCATGATCATGATGAATGATAGACCGATTAGCAGTACTACTAATACTAATACTAGTTATGGTGATCAAAGTACGATTGGGTGGAGTGGTGATCAGATGCAGCTGGTTTATCCTCCTCCTCTAGCTGCCTCAGGCTCAGACTATAATGAAAGCATGCAGAGAATGATAATGCCTCAAGATCAATGCGCTAATCTCAGCGGTAGTTACCCTGGGGATGGGGTACAATAA

Protein Analysis

372

Amino Acids

41.06

Weight (kDa)

6.41

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 26 - 69 6.9e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 28 - 73 3.6e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 126
AatII GACGTC 1 cut(s) 891
Acc36I ACCTGC 2 cut(s) 126, 263
AccII CGCG 1 cut(s) 259
AciI CCGC 5 cut(s) 235, 254, 267, 674, 1086
AclWI GGATC 2 cut(s) 258, 839
AcuI CTGAAG 2 cut(s) 108, 230
AcyI GRCGYC 1 cut(s) 888
AfaI GTAC 7 cut(s) 408, 453, 836, 878, 925, 961, 1110
AfiI CCNNNNNNNGG 3 cut(s) 253, 673, 1103
AflII CTTAAG 2 cut(s) 11, 821
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 3 cut(s) 463, 584, 782
AhdI GACNNNNNGTC 1 cut(s) 472
AhlI ACTAGT 1 cut(s) 941
AjnI CCWGG 2 cut(s) 163, 1096
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
AluBI AGCT 9 cut(s) 30, 220, 365, 391, 499, 609, 820, 991, 1013
AluI AGCT 9 cut(s) 30, 220, 365, 391, 499, 609, 820, 991, 1013
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 2 cut(s) 258, 839
Ama87I CYCGRG 2 cut(s) 386, 703
AoxI GGCC 2 cut(s) 383, 706
AspLEI GCGC 3 cut(s) 60, 259, 1076
AspS9I GGNCC 2 cut(s) 384, 706
AsuC2I CCSGG 2 cut(s) 704, 705
AsuHPI GGTGA 4 cut(s) 358, 420, 962, 989
AsuNHI GCTAGC 1 cut(s) 365
AvaI CYCGRG 2 cut(s) 386, 703
AxyI CCTNAGG 1 cut(s) 1018
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BauI CACGAG 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 891
Bbv12I GWGCWC 1 cut(s) 402
BccI CCATC 4 cut(s) 36, 418, 854, 1097
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 2 cut(s) 165, 1098
BclI TGATCA 4 cut(s) 595, 894, 952, 979
BcnI CCSGG 2 cut(s) 704, 705
BcoDI GTCTC 1 cut(s) 311
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 4 cut(s) 366, 606, 942, 1010
BfmI CTRYAG 1 cut(s) 270
BfrI CTTAAG 2 cut(s) 11, 821
BfuAI ACCTGC 2 cut(s) 126, 263
BmcAI AGTACT 1 cut(s) 925
Bme1390I CCNGG 4 cut(s) 165, 704, 705, 1098
BmeRI GACNNNNNGTC 1 cut(s) 472
BmeT110I CYCGRG 2 cut(s) 386, 703
BmgT120I GGNCC 2 cut(s) 384, 706
BmrFI CCNGG 4 cut(s) 165, 704, 705, 1098
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 1 cut(s) 975
BmtI GCTAGC 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 891
BpmI CTGGAG 1 cut(s) 887
BpuEI CTTGAG 1 cut(s) 1047
BpuMI CCSGG 2 cut(s) 704, 705
Bsa29I ATCGAT 1 cut(s) 413
BsaHI GRCGYC 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 5 cut(s) 342, 553, 703, 1096, 1097
BsaXI ACNNNNNCTCC 4 cut(s) 384, 414, 860, 890
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 673, 1103
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 5 cut(s) 200, 386, 395, 590, 684
Bse21I CCTNAGG 1 cut(s) 1018
BseBI CCWGG 2 cut(s) 165, 1098
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 5 cut(s) 342, 553, 703, 1096, 1097
BseGI GGATG 2 cut(s) 10, 1108
BseLI CCNNNNNNNGG 3 cut(s) 253, 673, 1103
BseMII CTCAG 4 cut(s) 29, 1032, 1038, 1096
BseNI ACTGG 5 cut(s) 200, 386, 395, 590, 684
BseRI GAGGAG 3 cut(s) 647, 993, 996
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 385, 708
BshVI ATCGAT 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 2 cut(s) 386, 703
BsiSI CCGG 2 cut(s) 34, 704
BslI CCNNNNNNNGG 3 cut(s) 253, 673, 1103
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 2 cut(s) 385, 708
Bso31I GGTCTC 1 cut(s) 311
BsoBI CYCGRG 2 cut(s) 386, 703
Bsp1286I GDGCHC 1 cut(s) 402
Bsp1407I TGTACA 2 cut(s) 834, 876
Bsp143I GATC 8 cut(s) 263, 520, 595, 844, 894, 952, 979, 1066
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 5 cut(s) 235, 254, 267, 674, 1086
BspANI GGCC 2 cut(s) 385, 708
BspCNI CTCAG 4 cut(s) 30, 1031, 1037, 1095
BspDI ATCGAT 1 cut(s) 413
BspFNI CGCG 1 cut(s) 259
BspHI TCATGA 2 cut(s) 891, 897
BspMAI CTGCAG 1 cut(s) 274
BspMI ACCTGC 2 cut(s) 126, 263
BspOI GCTAGC 1 cut(s) 369
BspPI GGATC 2 cut(s) 258, 839
BspQI GCTCTTC 1 cut(s) 20
BspTI CTTAAG 2 cut(s) 11, 821
BspTNI GGTCTC 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 33
BsrGI TGTACA 2 cut(s) 834, 876
BsrI ACTGG 5 cut(s) 200, 386, 395, 590, 684
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 5 cut(s) 342, 553, 703, 1096, 1097
BssMI GATC 8 cut(s) 263, 520, 595, 844, 894, 952, 979, 1066
BssNI GRCGYC 1 cut(s) 888
BssSI CACGAG 1 cut(s) 629
BssT1I CCWWGG 2 cut(s) 342, 553
Bst2BI CACGAG 1 cut(s) 629
Bst2UI CCWGG 2 cut(s) 165, 1098
Bst4CI ACNGT 1 cut(s) 881
Bst6I CTCTTC 2 cut(s) 20, 87
BstACI GRCGYC 1 cut(s) 888
BstAFI CTTAAG 2 cut(s) 11, 821
BstAUI TGTACA 2 cut(s) 834, 876
BstC8I GCNNGC 3 cut(s) 35, 367, 1043
BstDEI CTNAG 4 cut(s) 38, 1018, 1024, 1082
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 10, 1108
BstFNI CGCG 1 cut(s) 259
BstHHI GCGC 3 cut(s) 60, 259, 1076
BstKTI GATC 8 cut(s) 266, 523, 598, 847, 897, 955, 982, 1069
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 8 cut(s) 263, 520, 595, 844, 894, 952, 979, 1066
BstMWI GCNNNNNNNGC 5 cut(s) 397, 496, 680, 705, 749
BstNI CCWGG 2 cut(s) 165, 1098
BstNSI RCATGY 2 cut(s) 778, 1045
BstSCI CCNGG 4 cut(s) 163, 702, 703, 1096
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 891
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
Bsu15I ATCGAT 1 cut(s) 413
Bsu36I CCTNAGG 1 cut(s) 1018
BsuRI GGCC 2 cut(s) 385, 708
BsuTUI ATCGAT 1 cut(s) 413
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 10, 1108
BtsIMutI CAGTG 2 cut(s) 402, 886
BveI ACCTGC 2 cut(s) 126, 263
Cac8I GCNNGC 3 cut(s) 35, 367, 1043
CciI TCATGA 2 cut(s) 891, 897
CfoI GCGC 3 cut(s) 60, 259, 1076
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 384, 706
Cfr9I CCCGGG 1 cut(s) 703
ClaI ATCGAT 1 cut(s) 413
CseI GACGC 1 cut(s) 462
Csp6I GTAC 7 cut(s) 407, 452, 835, 877, 924, 960, 1109
CviAII CATG 9 cut(s) 74, 248, 343, 470, 775, 829, 892, 898, 1042
CviQI GTAC 7 cut(s) 407, 452, 835, 877, 924, 960, 1109
DdeI CTNAG 4 cut(s) 38, 1018, 1024, 1082
DpnI GATC 8 cut(s) 265, 522, 597, 846, 896, 954, 981, 1068
DpnII GATC 8 cut(s) 263, 520, 595, 844, 894, 952, 979, 1066
DriI GACNNNNNGTC 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 20, 87
Eam1105I GACNNNNNGTC 1 cut(s) 472
EarI CTCTTC 2 cut(s) 20, 87
Eco130I CCWWGG 2 cut(s) 342, 553
Eco31I GGTCTC 1 cut(s) 311
Eco57I CTGAAG 2 cut(s) 108, 230
Eco81I CCTNAGG 1 cut(s) 1018
Eco88I CYCGRG 2 cut(s) 386, 703
EcoRII CCWGG 2 cut(s) 163, 1096
EcoT14I CCWWGG 2 cut(s) 342, 553
ErhI CCWWGG 2 cut(s) 342, 553
FaeI CATG 9 cut(s) 77, 251, 346, 473, 778, 832, 895, 901, 1045
FatI CATG 9 cut(s) 73, 247, 342, 469, 774, 828, 891, 897, 1041
FbaI TGATCA 4 cut(s) 595, 894, 952, 979
FokI GGATG 1 cut(s) 17
FspBI CTAG 4 cut(s) 366, 606, 942, 1010
GlaI GCGC 3 cut(s) 59, 258, 1075
GsuI CTGGAG 1 cut(s) 887
HaeIII GGCC 2 cut(s) 385, 708
HapII CCGG 2 cut(s) 34, 704
HgaI GACGC 1 cut(s) 462
HhaI GCGC 3 cut(s) 60, 259, 1076
Hin1I GRCGYC 1 cut(s) 888
Hin1II CATG 9 cut(s) 77, 251, 346, 473, 778, 832, 895, 901, 1045
Hin6I GCGC 3 cut(s) 58, 257, 1074
HinP1I GCGC 3 cut(s) 58, 257, 1074
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 349, 635
HpaII CCGG 2 cut(s) 34, 704
HphI GGTGA 4 cut(s) 358, 420, 962, 989
Hpy166II GTNNAC 2 cut(s) 772, 835
Hpy188I TCNGA 6 cut(s) 88, 482, 503, 520, 984, 1027
Hpy188III TCNNGA 6 cut(s) 527, 629, 848, 892, 898, 1064
Hpy8I GTNNAC 2 cut(s) 772, 835
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 1 cut(s) 888
HpyCH4V TGCA 7 cut(s) 111, 152, 272, 652, 716, 988, 1045
HpyF10VI GCNNNNNNNGC 5 cut(s) 397, 496, 680, 705, 749
HpyF3I CTNAG 4 cut(s) 38, 1018, 1024, 1082
HpySE526I ACGT 1 cut(s) 888
Hsp92I GRCGYC 1 cut(s) 888
Hsp92II CATG 9 cut(s) 77, 251, 346, 473, 778, 832, 895, 901, 1045
HspAI GCGC 3 cut(s) 58, 257, 1074
KroI GCCGGC 1 cut(s) 33
KroNI GCCGGC 1 cut(s) 35
Ksp22I TGATCA 4 cut(s) 595, 894, 952, 979
Kzo9I GATC 8 cut(s) 263, 520, 595, 844, 894, 952, 979, 1066
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 405
LweI GCATC 1 cut(s) 975
MaeI CTAG 4 cut(s) 366, 606, 942, 1010
MaeII ACGT 1 cut(s) 888
MaeIII GTNAC 3 cut(s) 686, 797, 1091
MalI GATC 8 cut(s) 265, 522, 597, 846, 896, 954, 981, 1068
MboI GATC 8 cut(s) 263, 520, 595, 844, 894, 952, 979, 1066
MboII GAAGA 7 cut(s) 37, 101, 104, 180, 223, 519, 896
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 7 cut(s) 105, 147, 291, 337, 421, 599, 710
MlyI GAGTC 1 cut(s) 644
MroNI GCCGGC 1 cut(s) 33
MseI TTAA 4 cut(s) 12, 47, 104, 822
MslI CAYNNNNRTG 2 cut(s) 531, 896
MspA1I CMGCKG 3 cut(s) 269, 991, 1086
MspCI CTTAAG 2 cut(s) 11, 821
MspI CCGG 2 cut(s) 34, 704
MspR9I CCNGG 4 cut(s) 165, 704, 705, 1098
MvaI CCWGG 2 cut(s) 165, 1098
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 5 cut(s) 397, 496, 680, 705, 749
NaeI GCCGGC 1 cut(s) 35
NciI CCSGG 2 cut(s) 704, 705
NcoI CCATGG 1 cut(s) 342
NdeII GATC 8 cut(s) 263, 520, 595, 844, 894, 952, 979, 1066
NgoMIV GCCGGC 1 cut(s) 33
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 9 cut(s) 77, 251, 346, 473, 778, 832, 895, 901, 1045
NspI RCATGY 2 cut(s) 778, 1045
PaeI GCATGC 1 cut(s) 1045
PagI TCATGA 2 cut(s) 891, 897
PaqCI CACCTGC 1 cut(s) 126
PasI CCCWGGG 1 cut(s) 1097
PciI ACATGT 1 cut(s) 774
PciSI GCTCTTC 1 cut(s) 20
PdiI GCCGGC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 349
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PscI ACATGT 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 163, 1096
PspGI CCWGG 2 cut(s) 163, 1096
PspPI GGNCC 2 cut(s) 384, 706
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 991
RsaI GTAC 7 cut(s) 408, 453, 836, 878, 925, 961, 1110
RsaNI GTAC 7 cut(s) 407, 452, 835, 877, 924, 960, 1109
RseI CAYNNNNRTG 2 cut(s) 531, 896
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 4 cut(s) 12, 47, 104, 822
Sau3AI GATC 8 cut(s) 263, 520, 595, 844, 894, 952, 979, 1066
Sau96I GGNCC 2 cut(s) 384, 706
ScaI AGTACT 1 cut(s) 925
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 4 cut(s) 165, 704, 705, 1098
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 1 cut(s) 975
SfcI CTRYAG 1 cut(s) 270
SmaI CCCGGG 1 cut(s) 705
SmiMI CAYNNNNRTG 2 cut(s) 531, 896
SmlI CTYRAG 3 cut(s) 11, 821, 1062
SmoI CTYRAG 3 cut(s) 11, 821, 1062
SpeI ACTAGT 1 cut(s) 941
SphI GCATGC 1 cut(s) 1045
Sse9I AATT 7 cut(s) 105, 147, 291, 337, 421, 599, 710
SsiI CCGC 5 cut(s) 235, 254, 267, 674, 1086
SspI AATATT 1 cut(s) 841
SspMI CTAG 4 cut(s) 366, 606, 942, 1010
StyD4I CCNGG 4 cut(s) 163, 702, 703, 1096
StyI CCWWGG 2 cut(s) 342, 553
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 1 cut(s) 891
TaqI TCGA 3 cut(s) 413, 569, 812
TaqII GACCGA 1 cut(s) 928
TasI AATT 7 cut(s) 105, 147, 291, 337, 421, 599, 710
TatI WGTACW 3 cut(s) 834, 876, 923
TauI GCSGC 2 cut(s) 257, 677
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 4 cut(s) 12, 47, 104, 822
Tru9I TTAA 4 cut(s) 12, 47, 104, 822
TscAI CASTG 2 cut(s) 402, 886
TspDTI ATGAA 4 cut(s) 503, 737, 917, 1050
TspMI CCCGGG 1 cut(s) 703
TspRI CASTG 2 cut(s) 402, 886
Vha464I CTTAAG 2 cut(s) 11, 821
XceI RCATGY 2 cut(s) 778, 1045
XmaI CCCGGG 1 cut(s) 703
XspI CTAG 4 cut(s) 366, 606, 942, 1010
ZraI GACGTC 1 cut(s) 889
ZrmI AGTACT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.