MD02G1191000.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
17743716 .. 17745130
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1191000.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTCAAGAAAGGCCCTTGGTCACCAGAAGAAGATGCCACCCTCAAGGCTTACATCGAGAAGCACGGCACCGGCGGCAACTGGATTGCCTTGCCCCAGAAGATAGGCTTAAGAAGGTGCGGCAAAAGCTGTCGACTTAGATGGTTGAATTATCTCCGGCCTAATATCAAGCACGGCGGGTTCTCAGAGGAAGAAGATAACATCATCTGCAGCTTCTACATGAGTATTGGAAGCAGGTGGTCTATCATTGCAGGCCAGTTACCAGGGCGAACGGACAACGATATTAAGAACTACTGGAACACAAGGCTGAAGAAAAAGCTTTTGGGCAGGCAGCGCAAACAACAACAGGTTCAGCAAAGTCGCCGCACGGCCAGCTTTAAGCAAGGGATGATCAAAAGATCAGAAAATATTGCAAATTTTATTAATATCCCTGCTGGGTTTGACAACCAAAACCCTTATGACTTGCCAGAGCTACCAGTAGTCCCAGTGACTAATTATCAAACACATAACCCTCAACTCATCAAGGATCAGGCTTCCATTAAGAATATGCTCATCAATCTTGGAGGAAGATTTTCCCATGATTCTGACACTAACAATACAAGTTTTCAGTACCCCATCGATATTTTGTCAACCTCATCCTCAGATCAACAATTTTATCAGAGCTCCATTAATGTACTCAGTTGTACTTCAGCAGCCAACAACAATAACTATTCTCAATTTCCAGGCACACACTGTGATGCTAGTAACGGTACTGGGGGTTCAAGTAGTCCAACCATGTTTCACGGGCTCAACGATCAGAACAACAACCTACAGGTTGATCATCTTCACCCGCTAAGTGAACTGGAGATTTACGACAACAATTTTGCTCACCAACATCAGCAATTGGGTGGTTTTTATTATCAAGCCACCACGGAGACGTTGAACAATGGTAGCACTGCAGGGACTAGTACTGCTTCTGCAGAGAGTGAAATTAGTTGGGGAGACATAAATTCCCTGGTTTATAGTACTCAAATGGTTGCAGGCTATGAAACCAGCTGCCCACAAGCAGTCACAGTACCACCAGGTCTTCCTACTGTTTTTGCAGAGTCGACCTTATTGGGCCTCAAATAA

Protein Analysis

380

Amino Acids

42.04

Weight (kDa)

7.61

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 9.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 2.1e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 2.7e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 98
AccI GTMKAC 2 cut(s) 163, 1118
AciI CCGC 5 cut(s) 105, 150, 207, 394, 860
AclWI GGATC 1 cut(s) 564
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 2 cut(s) 445, 1018
AcuI CTGAAG 2 cut(s) 359, 702
AdeI CACNNNGTG 1 cut(s) 764
AfaI GTAC 7 cut(s) 641, 705, 715, 781, 979, 1036, 1086
AflII CTTAAG 1 cut(s) 139
AgsI TTSAA 3 cut(s) 178, 792, 952
AhlI ACTAGT 1 cut(s) 974
AjnI CCWGG 4 cut(s) 292, 751, 1023, 1090
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 8 cut(s) 11, 159, 243, 349, 405, 502, 693, 1065
AluI AGCT 8 cut(s) 11, 159, 243, 349, 405, 502, 693, 1065
Alw21I GWGCWC 2 cut(s) 13, 695
Alw26I GTCTC 2 cut(s) 938, 1005
AlwI GGATC 1 cut(s) 564
AoxI GGCC 5 cut(s) 43, 188, 283, 399, 1129
ApeKI GCWGC 4 cut(s) 240, 361, 722, 1065
ApoI RAATTY 2 cut(s) 445, 1018
ArsI GACNNNNNNTTYG 4 cut(s) 18, 50, 875, 907
AseI ATTAAT 2 cut(s) 453, 699
Asp700I GAANNNNTTC 1 cut(s) 601
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 44, 1129
AsuHPI GGTGA 3 cut(s) 45, 848, 890
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 3 cut(s) 13, 695, 819
BbsI GAAGAC 1 cut(s) 1088
Bbv12I GWGCWC 2 cut(s) 13, 695
BbvI GCAGC 4 cut(s) 252, 373, 734, 1052
BccI CCATC 2 cut(s) 165, 653
BceAI ACGGC 3 cut(s) 112, 220, 414
BciT130I CCWGG 4 cut(s) 294, 753, 1025, 1092
BclI TGATCA 2 cut(s) 420, 847
BcoDI GTCTC 2 cut(s) 938, 1005
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 2 cut(s) 771, 975
BfmI CTRYAG 4 cut(s) 238, 839, 966, 987
BfrI CTTAAG 1 cut(s) 139
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 7 cut(s) 106, 151, 241, 362, 394, 723, 1066
BlsI GCNGC 7 cut(s) 107, 152, 242, 363, 395, 724, 1067
BmcAI AGTACT 2 cut(s) 979, 1036
Bme1390I CCNGG 4 cut(s) 294, 753, 1025, 1092
BmgT120I GGNCC 2 cut(s) 44, 1129
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 4 cut(s) 294, 753, 1025, 1092
BmrI ACTGGG 2 cut(s) 509, 792
BmsI GCATC 2 cut(s) 55, 757
BmuI ACTGGG 2 cut(s) 509, 792
BpiI GAAGAC 1 cut(s) 1088
BpmI CTGGAG 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 648
BsaJI CCNNGG 4 cut(s) 47, 293, 939, 1023
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 7 cut(s) 116, 286, 329, 506, 515, 787, 876
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 4 cut(s) 294, 753, 1025, 1092
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 4 cut(s) 47, 293, 939, 1023
BseGI GGATG 2 cut(s) 423, 665
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 228, 684, 721
BseNI ACTGG 7 cut(s) 116, 286, 329, 506, 515, 787, 876
BseXI GCAGC 4 cut(s) 252, 373, 734, 1052
BseYI CCCAGC 1 cut(s) 464
BshFI GGCC 5 cut(s) 45, 190, 285, 401, 1131
BshNI GGYRCC 1 cut(s) 98
BshVI ATCGAT 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 13, 695
BsiSI CCGG 2 cut(s) 102, 187
BslFI GGGAC 2 cut(s) 497, 985
BsmAI GTCTC 2 cut(s) 938, 1005
BsmBI CGTCTC 1 cut(s) 938
BsmFI GGGAC 2 cut(s) 497, 985
BsnI GGCC 5 cut(s) 45, 190, 285, 401, 1131
Bsp1286I GDGCHC 3 cut(s) 13, 695, 819
Bsp143I GATC 6 cut(s) 420, 428, 556, 673, 823, 847
BspACI CCGC 5 cut(s) 105, 150, 207, 394, 860
BspANI GGCC 5 cut(s) 45, 190, 285, 401, 1131
BspCNI CTCAG 3 cut(s) 227, 683, 720
BspDI ATCGAT 1 cut(s) 648
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 3 cut(s) 242, 970, 991
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 564
BspT107I GGYRCC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 7 cut(s) 116, 286, 329, 506, 515, 787, 876
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 47, 293, 939, 1023
BssMI GATC 6 cut(s) 420, 428, 556, 673, 823, 847
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 4 cut(s) 294, 753, 1025, 1092
Bst4CI ACNGT 4 cut(s) 764, 779, 1084, 1105
BstAFI CTTAAG 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 283, 359, 403, 1051
BstDEI CTNAG 5 cut(s) 167, 214, 670, 707, 863
BstDSI CCRYGG 1 cut(s) 939
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 2 cut(s) 423, 665
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 6 cut(s) 423, 431, 559, 676, 826, 850
BstMAI GTCTC 2 cut(s) 938, 1005
BstMBI GATC 6 cut(s) 420, 428, 556, 673, 823, 847
BstMWI GCNNNNNNNGC 4 cut(s) 105, 156, 363, 402
BstNI CCWGG 4 cut(s) 294, 753, 1025, 1092
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 4 cut(s) 292, 751, 1023, 1090
BstSFI CTRYAG 4 cut(s) 238, 839, 966, 987
BstV1I GCAGC 4 cut(s) 252, 373, 734, 1052
BstV2I GAAGAC 1 cut(s) 1088
Bsu15I ATCGAT 1 cut(s) 648
BsuRI GGCC 5 cut(s) 45, 190, 285, 401, 1131
BsuTUI ATCGAT 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 939
BtsCI GGATG 2 cut(s) 423, 665
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 3 cut(s) 522, 760, 963
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 4 cut(s) 283, 359, 403, 1051
CfoI GCGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 44, 1129
ClaI ATCGAT 1 cut(s) 648
CsiI ACCWGGT 1 cut(s) 1090
Csp6I GTAC 7 cut(s) 640, 704, 714, 780, 978, 1035, 1085
CviAII CATG 3 cut(s) 250, 608, 805
CviQI GTAC 7 cut(s) 640, 704, 714, 780, 978, 1035, 1085
DdeI CTNAG 5 cut(s) 167, 214, 670, 707, 863
DpnI GATC 6 cut(s) 422, 430, 558, 675, 825, 849
DpnII GATC 6 cut(s) 420, 428, 556, 673, 823, 847
DraIII CACNNNGTG 1 cut(s) 764
EaeI YGGCCR 1 cut(s) 399
Ecl136II GAGCTC 2 cut(s) 11, 693
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 3 cut(s) 13, 695, 819
Eco53kI GAGCTC 2 cut(s) 11, 693
Eco57I CTGAAG 2 cut(s) 359, 702
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 2 cut(s) 11, 693
EcoO109I RGGNCCY 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 4 cut(s) 292, 751, 1023, 1090
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 3 cut(s) 13, 695, 819
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 938
FaeI CATG 3 cut(s) 253, 611, 808
FaiI YATR 9 cut(s) 251, 489, 537, 578, 609, 806, 1016, 1032, 1056
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 2 cut(s) 497, 985
FatI CATG 3 cut(s) 249, 607, 804
FauI CCCGC 2 cut(s) 200, 867
FbaI TGATCA 2 cut(s) 420, 847
FblI GTMKAC 2 cut(s) 163, 1118
Fnu4HI GCNGC 7 cut(s) 106, 151, 241, 362, 394, 723, 1066
FokI GGATG 2 cut(s) 430, 652
FriOI GRGCYC 3 cut(s) 13, 695, 819
Fsp4HI GCNGC 7 cut(s) 106, 151, 241, 362, 394, 723, 1066
FspBI CTAG 2 cut(s) 771, 975
GlaI GCGC 1 cut(s) 365
GluI GCNGC 7 cut(s) 106, 151, 241, 362, 394, 723, 1066
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 893
HaeIII GGCC 5 cut(s) 45, 190, 285, 401, 1131
HapII CCGG 2 cut(s) 102, 187
HhaI GCGC 1 cut(s) 366
Hin1II CATG 3 cut(s) 253, 611, 808
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HincII GTYRAC 3 cut(s) 164, 660, 1119
HindII GTYRAC 3 cut(s) 164, 660, 1119
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 2 cut(s) 611, 1115
HpaII CCGG 2 cut(s) 102, 187
HphI GGTGA 3 cut(s) 45, 848, 890
Hpy166II GTNNAC 4 cut(s) 164, 660, 869, 1119
Hpy188I TCNGA 6 cut(s) 217, 433, 616, 673, 690, 828
Hpy188III TCNNGA 2 cut(s) 37, 88
Hpy8I GTNNAC 4 cut(s) 164, 660, 869, 1119
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 4 cut(s) 764, 779, 1084, 1105
HpyCH4IV ACGT 2 cut(s) 33, 947
HpyCH4V TGCA 7 cut(s) 240, 281, 443, 968, 989, 1049, 1112
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 156, 363, 402
HpyF3I CTNAG 5 cut(s) 167, 214, 670, 707, 863
HpySE526I ACGT 2 cut(s) 33, 947
Hsp92II CATG 3 cut(s) 253, 611, 808
HspAI GCGC 1 cut(s) 364
Ksp22I TGATCA 2 cut(s) 420, 847
Kzo9I GATC 6 cut(s) 420, 428, 556, 673, 823, 847
LmnI GCTCC 2 cut(s) 16, 698
Lsp1109I GCAGC 4 cut(s) 252, 373, 734, 1052
LweI GCATC 2 cut(s) 55, 757
MabI ACCWGGT 1 cut(s) 1090
MaeI CTAG 2 cut(s) 771, 975
MaeII ACGT 2 cut(s) 33, 947
MaeIII GTNAC 6 cut(s) 20, 51, 288, 517, 773, 1078
MalI GATC 6 cut(s) 422, 430, 558, 675, 825, 849
MboI GATC 6 cut(s) 420, 428, 556, 673, 823, 847
MboII GAAGA 9 cut(s) 71, 74, 142, 233, 236, 352, 609, 845, 1088
MfeI CAATTG 1 cut(s) 911
MhlI GDGCHC 3 cut(s) 13, 695, 819
MluCI AATT 9 cut(s) 178, 445, 523, 680, 746, 889, 911, 999, 1018
MlyI GAGTC 1 cut(s) 1124
MmeI TCCRAC 1 cut(s) 824
MnlI CCTC 6 cut(s) 83, 211, 552, 587, 673, 679
MroXI GAANNNNTTC 1 cut(s) 601
MseI TTAA 6 cut(s) 140, 315, 408, 453, 570, 699
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 1065
MspCI CTTAAG 1 cut(s) 139
MspI CCGG 2 cut(s) 102, 187
MspR9I CCNGG 4 cut(s) 294, 753, 1025, 1092
MunI CAATTG 1 cut(s) 911
MvaI CCWGG 4 cut(s) 294, 753, 1025, 1092
MwoI GCNNNNNNNGC 4 cut(s) 105, 156, 363, 402
NdeII GATC 6 cut(s) 420, 428, 556, 673, 823, 847
NlaIII CATG 3 cut(s) 253, 611, 808
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 4 cut(s) 20, 51, 517, 1078
PaqCI CACCTGC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 819
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 7 cut(s) 107, 152, 242, 363, 395, 724, 1067
PleI GAGTC 1 cut(s) 1123
PpsI GAGTC 1 cut(s) 1123
PshBI ATTAAT 2 cut(s) 453, 699
Psp124BI GAGCTC 2 cut(s) 13, 695
Psp6I CCWGG 4 cut(s) 292, 751, 1023, 1090
PspEI GGTNACC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 4 cut(s) 292, 751, 1023, 1090
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 44, 1129
PsrI GAACNNNNNNTAC 2 cut(s) 772, 804
PstI CTGCAG 3 cut(s) 242, 970, 991
PvuII CAGCTG 1 cut(s) 1065
RsaI GTAC 7 cut(s) 641, 705, 715, 781, 979, 1036, 1086
RsaNI GTAC 7 cut(s) 640, 704, 714, 780, 978, 1035, 1085
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 2 cut(s) 13, 695
SalI GTCGAC 2 cut(s) 162, 1117
SaqAI TTAA 6 cut(s) 140, 315, 408, 453, 570, 699
SatI GCNGC 7 cut(s) 106, 151, 241, 362, 394, 723, 1066
Sau3AI GATC 6 cut(s) 420, 428, 556, 673, 823, 847
Sau96I GGNCC 2 cut(s) 44, 1129
ScaI AGTACT 2 cut(s) 979, 1036
SchI GAGTC 1 cut(s) 1124
ScrFI CCNGG 4 cut(s) 294, 753, 1025, 1092
SduI GDGCHC 3 cut(s) 13, 695, 819
SexAI ACCWGGT 1 cut(s) 1090
SfaNI GCATC 2 cut(s) 55, 757
SfcI CTRYAG 4 cut(s) 238, 839, 966, 987
SgrAI CRCCGGYG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 74, 139
SmoI CTYRAG 2 cut(s) 74, 139
SpeI ACTAGT 1 cut(s) 974
Sse9I AATT 9 cut(s) 178, 445, 523, 680, 746, 889, 911, 999, 1018
SsiI CCGC 5 cut(s) 105, 150, 207, 394, 860
SspI AATATT 1 cut(s) 439
SspMI CTAG 2 cut(s) 771, 975
SstI GAGCTC 2 cut(s) 13, 695
StyD4I CCNGG 4 cut(s) 292, 751, 1023, 1090
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 764, 779, 1084, 1105
TaiI ACGT 2 cut(s) 36, 950
TaqI TCGA 4 cut(s) 87, 163, 648, 1118
TasI AATT 9 cut(s) 178, 445, 523, 680, 746, 889, 911, 999, 1018
TatI WGTACW 4 cut(s) 703, 713, 977, 1034
TauI GCSGC 3 cut(s) 108, 153, 396
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 6 cut(s) 140, 315, 408, 453, 570, 699
Tru9I TTAA 6 cut(s) 140, 315, 408, 453, 570, 699
TscAI CASTG 3 cut(s) 522, 767, 970
TseFI GTSAC 4 cut(s) 20, 51, 517, 1078
TseI GCWGC 4 cut(s) 240, 361, 722, 1065
Tsp45I GTSAC 4 cut(s) 20, 51, 517, 1078
TspDTI ATGAA 1 cut(s) 1071
TspGWI ACGGA 2 cut(s) 317, 956
TspRI CASTG 3 cut(s) 522, 767, 970
Vha464I CTTAAG 1 cut(s) 139
VspI ATTAAT 2 cut(s) 453, 699
XapI RAATTY 2 cut(s) 445, 1018
XmiI GTMKAC 2 cut(s) 163, 1118
XmnI GAANNNNTTC 1 cut(s) 601
XspI CTAG 2 cut(s) 771, 975
ZrmI AGTACT 2 cut(s) 979, 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.