Rw6G042860
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003649
Physical Location & Seq
Reverse (-)
66255895 .. 66257526
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042860.1

Sequence Viewer

Length: 1245 bp
ATGGGGAGAGCTCCTTGTTGTGACAAAGCGAACGTGAAGAGAGGGCCGTGGTCACCTGAAGAAGATTCCAAGCTCAAGTCGTATATTGAACTACACGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAGATAGGGCTTAAGAGATGTGGGAAGAGCTGCCGGCTGAGATGGTTAAACTATCTGCGCCCGAACATCAAGCATGGAGGGTTTTCTGAAGAAGAGGACAACTTAATTTGCAGCCTCTATATAAGTATTGGAAGCAGGTGGTCTATAATTGCAGCACAACTGCCTGGAAGAACTGATAATGATATAAAGAACTACTGGAACACAAGGCTGAAGAAAAAGCTTCTGGGAAAGCACCGCAAGGAACACCAGGCTGCTGCGCGTAGATCCGCTGCAGGTCTAAAACAGCAAGAAATTATCAAAAGAGGTCTCATCATCAGTAGTAGTAGTGGGAACAATAATTCCATGGTGAATCCTGTGGCAGCAGCTAGCCAAAACCCTTACTGGCCCGAGCTACCGGTGCTCCAAGTACCATCGATACCCAATTACTCATCACCAAACCAAGAAGTAGTAGTACCTTCTTTCAATGACCATGCGTCTATCCGAAAACTGCTTATCAAGCTCGGAGGAAGATTTCATTCAGATCATCACGACAATGTTGCTCAACCTAATATCCAAGATGTGTACTCCTCGAATGGCGATATTCAACTCCCAGTTGATCAATTTCCTAGCTCAACGCAACAGATTTATCACGAGGAGTCGGCAGCCAATATGCACTCATCTGCTAGCCTGATTGCGGCTTTAGCCAGTAACAATATCAGCAACCCGGGCCAATTTGCACAAATGAACCATTACAACAACCCCGCAGATAATGCTGGATATGGTGGTGCTGTGAACATGTTTCAAGGAGGGCAAAGTAGTAACTATTTTCTGTCGAACGAGCTTAAGGACATGGTGTGCAATATTGATCCAGAAAAGTTAGATGGGCTGGAGTTCTTATACAGTGAAGACGTCATGATCATGATGAATGATAGACCGATTAGCAGTACTACTAATACTAGTACTAGTTATGGTGATCAAAGTACGATTGGGTGGAGTGGTGATCAGATGCAGCTGGTTTATCCTCCTCCTCTAGCTGCCTCAGGCTTAGACTATCATGAAGCCATGCAGAGAATGATAATGCCTCAAGATCAATGCGCTAATCTCAGCGGTAGTTACCCTGGGGATGGGGTACAATAA

Protein Analysis

414

Amino Acids

45.71

Weight (kDa)

6.63

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 6.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 8e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 4.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
AatII GACGTC 1 cut(s) 1020
Acc36I ACCTGC 2 cut(s) 255, 392
AccII CGCG 1 cut(s) 388
AciI CCGC 5 cut(s) 364, 396, 803, 870, 1215
AclWI GGATC 2 cut(s) 387, 968
AcuI CTGAAG 3 cut(s) 78, 237, 359
AcyI GRCGYC 1 cut(s) 1017
AfaI GTAC 7 cut(s) 537, 582, 692, 1054, 1069, 1090, 1239
AfiI CCNNNNNNNGG 2 cut(s) 802, 1232
AflII CTTAAG 2 cut(s) 140, 950
AflIII ACRYGT 1 cut(s) 903
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 4 cut(s) 89, 592, 713, 911
AhdI GACNNNNNGTC 1 cut(s) 601
AhlI ACTAGT 2 cut(s) 1064, 1070
AjnI CCWGG 3 cut(s) 292, 375, 1225
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
Alw21I GWGCWC 2 cut(s) 13, 531
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 2 cut(s) 387, 968
Ama87I CYCGRG 2 cut(s) 515, 832
AoxI GGCC 3 cut(s) 44, 512, 835
AsiGI ACCGGT 1 cut(s) 523
AspLEI GCGC 3 cut(s) 189, 388, 1205
AspS9I GGNCC 3 cut(s) 44, 513, 835
AsuC2I CCSGG 2 cut(s) 833, 834
AsuHPI GGTGA 5 cut(s) 45, 487, 552, 1091, 1118
AsuNHI GCTAGC 2 cut(s) 494, 791
AvaI CYCGRG 2 cut(s) 515, 832
AxyI CCTNAGG 1 cut(s) 1147
BanII GRGCYC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 564, 596
BauI CACGAG 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 1020
Bbv12I GWGCWC 2 cut(s) 13, 531
BccI CCATC 4 cut(s) 165, 547, 983, 1226
BceAI ACGGC 2 cut(s) 31, 112
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 3 cut(s) 294, 377, 1227
BclI TGATCA 4 cut(s) 724, 1023, 1081, 1108
BcnI CCSGG 2 cut(s) 833, 834
BcoDI GTCTC 1 cut(s) 440
BcuI ACTAGT 2 cut(s) 1064, 1070
BfaI CTAG 6 cut(s) 495, 735, 792, 1065, 1071, 1139
BfmI CTRYAG 1 cut(s) 399
BfrI CTTAAG 2 cut(s) 140, 950
BfuAI ACCTGC 2 cut(s) 255, 392
BmcAI AGTACT 2 cut(s) 1054, 1069
Bme1390I CCNGG 5 cut(s) 294, 377, 833, 834, 1227
BmeRI GACNNNNNGTC 1 cut(s) 601
BmeT110I CYCGRG 2 cut(s) 515, 832
BmgT120I GGNCC 3 cut(s) 44, 513, 835
BmrFI CCNGG 5 cut(s) 294, 377, 833, 834, 1227
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 1 cut(s) 1104
BmtI GCTAGC 2 cut(s) 498, 795
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 1020
BpmI CTGGAG 1 cut(s) 1016
BpuEI CTTGAG 2 cut(s) 59, 1176
BpuMI CCSGG 2 cut(s) 833, 834
Bsa29I ATCGAT 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 1017
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 5 cut(s) 47, 471, 832, 1225, 1226
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 2 cut(s) 802, 1232
Bse118I RCCGGY 2 cut(s) 162, 523
Bse1I ACTGG 6 cut(s) 106, 116, 329, 515, 719, 813
Bse21I CCTNAGG 1 cut(s) 1147
BseBI CCWGG 3 cut(s) 294, 377, 1227
BseCI ATCGAT 1 cut(s) 542
BseDI CCNNGG 5 cut(s) 47, 471, 832, 1225, 1226
BseGI GGATG 1 cut(s) 1237
BseLI CCNNNNNNNGG 2 cut(s) 802, 1232
BseMII CTCAG 3 cut(s) 158, 1161, 1225
BseNI ACTGG 6 cut(s) 106, 116, 329, 515, 719, 813
BseRI GAGGAG 4 cut(s) 685, 776, 1122, 1125
Bsh1236I CGCG 1 cut(s) 388
BshFI GGCC 3 cut(s) 46, 514, 837
BshTI ACCGGT 1 cut(s) 523
BshVI ATCGAT 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 13, 531
BsiHKCI CYCGRG 2 cut(s) 515, 832
BsiSI CCGG 3 cut(s) 163, 524, 833
BslI CCNNNNNNNGG 2 cut(s) 802, 1232
BsmAI GTCTC 1 cut(s) 440
BsnI GGCC 3 cut(s) 46, 514, 837
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 2 cut(s) 515, 832
Bsp1286I GDGCHC 2 cut(s) 13, 531
Bsp143I GATC 8 cut(s) 392, 649, 724, 973, 1023, 1081, 1108, 1195
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 5 cut(s) 364, 396, 803, 870, 1215
BspANI GGCC 3 cut(s) 46, 514, 837
BspCNI CTCAG 3 cut(s) 159, 1160, 1224
BspDI ATCGAT 1 cut(s) 542
BspFNI CGCG 1 cut(s) 388
BspHI TCATGA 3 cut(s) 1020, 1026, 1162
BspMAI CTGCAG 1 cut(s) 403
BspMI ACCTGC 2 cut(s) 255, 392
BspOI GCTAGC 2 cut(s) 498, 795
BspPI GGATC 2 cut(s) 387, 968
BspQI GCTCTTC 1 cut(s) 149
BspTI CTTAAG 2 cut(s) 140, 950
BspTNI GGTCTC 1 cut(s) 440
BsrFI RCCGGY 2 cut(s) 162, 523
BsrI ACTGG 6 cut(s) 106, 116, 329, 515, 719, 813
BssAI RCCGGY 2 cut(s) 162, 523
BssECI CCNNGG 5 cut(s) 47, 471, 832, 1225, 1226
BssMI GATC 8 cut(s) 392, 649, 724, 973, 1023, 1081, 1108, 1195
BssNI GRCGYC 1 cut(s) 1017
BssSI CACGAG 1 cut(s) 758
BssT1I CCWWGG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 758
Bst2UI CCWGG 3 cut(s) 294, 377, 1227
Bst4CI ACNGT 1 cut(s) 1010
Bst6I CTCTTC 3 cut(s) 32, 149, 216
BstACI GRCGYC 1 cut(s) 1017
BstAFI CTTAAG 2 cut(s) 140, 950
BstAPI GCANNNNNTGC 1 cut(s) 878
BstC8I GCNNGC 3 cut(s) 164, 496, 793
BstDEI CTNAG 4 cut(s) 167, 1147, 1153, 1211
BstDSI CCRYGG 2 cut(s) 47, 471
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 1237
BstFNI CGCG 1 cut(s) 388
BstHHI GCGC 3 cut(s) 189, 388, 1205
BstKTI GATC 8 cut(s) 395, 652, 727, 976, 1026, 1084, 1111, 1198
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 8 cut(s) 392, 649, 724, 973, 1023, 1081, 1108, 1195
BstMWI GCNNNNNNNGC 5 cut(s) 526, 625, 809, 834, 878
BstNI CCWGG 3 cut(s) 294, 377, 1227
BstNSI RCATGY 1 cut(s) 907
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 5 cut(s) 292, 375, 831, 832, 1225
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
Bsu15I ATCGAT 1 cut(s) 542
Bsu36I CCTNAGG 1 cut(s) 1147
BsuRI GGCC 3 cut(s) 46, 514, 837
BsuTUI ATCGAT 1 cut(s) 542
BtgI CCRYGG 2 cut(s) 47, 471
BtsCI GGATG 1 cut(s) 1237
BtsIMutI CAGTG 2 cut(s) 99, 1015
BveI ACCTGC 2 cut(s) 255, 392
Cac8I GCNNGC 3 cut(s) 164, 496, 793
CciI TCATGA 3 cut(s) 1020, 1026, 1162
CfoI GCGC 3 cut(s) 189, 388, 1205
Cfr10I RCCGGY 2 cut(s) 162, 523
Cfr13I GGNCC 3 cut(s) 44, 513, 835
Cfr9I CCCGGG 1 cut(s) 832
ClaI ATCGAT 1 cut(s) 542
CseI GACGC 1 cut(s) 591
Csp6I GTAC 7 cut(s) 536, 581, 691, 1053, 1068, 1089, 1238
CspAI ACCGGT 1 cut(s) 523
CviAII CATG 9 cut(s) 203, 472, 599, 904, 958, 1021, 1027, 1163, 1171
CviQI GTAC 7 cut(s) 536, 581, 691, 1053, 1068, 1089, 1238
DdeI CTNAG 4 cut(s) 167, 1147, 1153, 1211
DpnI GATC 8 cut(s) 394, 651, 726, 975, 1025, 1083, 1110, 1197
DpnII GATC 8 cut(s) 392, 649, 724, 973, 1023, 1081, 1108, 1195
DriI GACNNNNNGTC 1 cut(s) 601
Eam1104I CTCTTC 3 cut(s) 32, 149, 216
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 3 cut(s) 32, 149, 216
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 440
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 78, 237, 359
Eco81I CCTNAGG 1 cut(s) 1147
Eco88I CYCGRG 2 cut(s) 515, 832
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 292, 375, 1225
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 9 cut(s) 206, 475, 602, 907, 961, 1024, 1030, 1166, 1174
FatI CATG 9 cut(s) 202, 471, 598, 903, 957, 1020, 1026, 1162, 1170
FauI CCCGC 1 cut(s) 877
FbaI TGATCA 4 cut(s) 724, 1023, 1081, 1108
FriOI GRGCYC 1 cut(s) 13
FspBI CTAG 6 cut(s) 495, 735, 792, 1065, 1071, 1139
GlaI GCGC 3 cut(s) 188, 387, 1204
GsuI CTGGAG 1 cut(s) 1016
HaeIII GGCC 3 cut(s) 46, 514, 837
HapII CCGG 3 cut(s) 163, 524, 833
HgaI GACGC 1 cut(s) 591
HhaI GCGC 3 cut(s) 189, 388, 1205
Hin1I GRCGYC 1 cut(s) 1017
Hin1II CATG 9 cut(s) 206, 475, 602, 907, 961, 1024, 1030, 1166, 1174
Hin6I GCGC 3 cut(s) 187, 386, 1203
HinP1I GCGC 3 cut(s) 187, 386, 1203
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 65, 478, 764
HpaII CCGG 3 cut(s) 163, 524, 833
HphI GGTGA 5 cut(s) 45, 487, 552, 1091, 1118
Hpy166II GTNNAC 2 cut(s) 691, 901
Hpy188I TCNGA 5 cut(s) 217, 611, 632, 649, 1113
Hpy188III TCNNGA 7 cut(s) 656, 758, 977, 1021, 1027, 1163, 1193
Hpy8I GTNNAC 2 cut(s) 691, 901
HpyAV CCTTC 1 cut(s) 594
HpyCH4III ACNGT 1 cut(s) 1010
HpyCH4IV ACGT 2 cut(s) 33, 1017
HpyCH4V TGCA 8 cut(s) 240, 281, 401, 781, 845, 966, 1117, 1174
HpyF10VI GCNNNNNNNGC 5 cut(s) 526, 625, 809, 834, 878
HpyF3I CTNAG 4 cut(s) 167, 1147, 1153, 1211
HpySE526I ACGT 2 cut(s) 33, 1017
Hsp92I GRCGYC 1 cut(s) 1017
Hsp92II CATG 9 cut(s) 206, 475, 602, 907, 961, 1024, 1030, 1166, 1174
HspAI GCGC 3 cut(s) 187, 386, 1203
KroI GCCGGC 1 cut(s) 162
KroNI GCCGGC 1 cut(s) 164
Ksp22I TGATCA 4 cut(s) 724, 1023, 1081, 1108
Kzo9I GATC 8 cut(s) 392, 649, 724, 973, 1023, 1081, 1108, 1195
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 16, 534
LweI GCATC 1 cut(s) 1104
MaeI CTAG 6 cut(s) 495, 735, 792, 1065, 1071, 1139
MaeII ACGT 2 cut(s) 33, 1017
MaeIII GTNAC 6 cut(s) 20, 51, 107, 815, 926, 1220
MalI GATC 8 cut(s) 394, 651, 726, 975, 1025, 1083, 1110, 1197
MboI GATC 8 cut(s) 392, 649, 724, 973, 1023, 1081, 1108, 1195
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 13, 531
MluCI AATT 7 cut(s) 234, 276, 420, 466, 550, 728, 839
MlyI GAGTC 1 cut(s) 773
MroNI GCCGGC 1 cut(s) 162
MseI TTAA 4 cut(s) 141, 176, 233, 951
MslI CAYNNNNRTG 2 cut(s) 660, 1025
MspA1I CMGCKG 3 cut(s) 398, 1120, 1215
MspCI CTTAAG 2 cut(s) 140, 950
MspI CCGG 3 cut(s) 163, 524, 833
MspR9I CCNGG 5 cut(s) 294, 377, 833, 834, 1227
MvaI CCWGG 3 cut(s) 294, 377, 1227
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 5 cut(s) 526, 625, 809, 834, 878
NaeI GCCGGC 1 cut(s) 164
NciI CCSGG 2 cut(s) 833, 834
NcoI CCATGG 1 cut(s) 471
NdeII GATC 8 cut(s) 392, 649, 724, 973, 1023, 1081, 1108, 1195
NgoMIV GCCGGC 1 cut(s) 162
NheI GCTAGC 2 cut(s) 494, 791
NlaIII CATG 9 cut(s) 206, 475, 602, 907, 961, 1024, 1030, 1166, 1174
NmuCI GTSAC 2 cut(s) 20, 51
NspI RCATGY 1 cut(s) 907
PagI TCATGA 3 cut(s) 1020, 1026, 1162
PaqCI CACCTGC 1 cut(s) 255
PasI CCCWGGG 1 cut(s) 1226
PciI ACATGT 1 cut(s) 903
PciSI GCTCTTC 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 65, 478
PinAI ACCGGT 1 cut(s) 523
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
PscI ACATGT 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 292, 375, 1225
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 3 cut(s) 292, 375, 1225
PspPI GGNCC 3 cut(s) 44, 513, 835
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 1120
RsaI GTAC 7 cut(s) 537, 582, 692, 1054, 1069, 1090, 1239
RsaNI GTAC 7 cut(s) 536, 581, 691, 1053, 1068, 1089, 1238
RseI CAYNNNNRTG 2 cut(s) 660, 1025
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 4 cut(s) 141, 176, 233, 951
Sau3AI GATC 8 cut(s) 392, 649, 724, 973, 1023, 1081, 1108, 1195
Sau96I GGNCC 3 cut(s) 44, 513, 835
ScaI AGTACT 2 cut(s) 1054, 1069
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 5 cut(s) 294, 377, 833, 834, 1227
SduI GDGCHC 2 cut(s) 13, 531
SfaNI GCATC 1 cut(s) 1104
SfcI CTRYAG 1 cut(s) 399
SmaI CCCGGG 1 cut(s) 834
SmiMI CAYNNNNRTG 2 cut(s) 660, 1025
SmlI CTYRAG 4 cut(s) 74, 140, 950, 1191
SmoI CTYRAG 4 cut(s) 74, 140, 950, 1191
SpeI ACTAGT 2 cut(s) 1064, 1070
Sse9I AATT 7 cut(s) 234, 276, 420, 466, 550, 728, 839
SsiI CCGC 5 cut(s) 364, 396, 803, 870, 1215
SspI AATATT 1 cut(s) 970
SspMI CTAG 6 cut(s) 495, 735, 792, 1065, 1071, 1139
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 5 cut(s) 292, 375, 831, 832, 1225
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 1010
TaiI ACGT 2 cut(s) 36, 1020
TaqI TCGA 3 cut(s) 542, 698, 941
TaqII GACCGA 1 cut(s) 1057
TasI AATT 7 cut(s) 234, 276, 420, 466, 550, 728, 839
TatI WGTACW 3 cut(s) 690, 1052, 1067
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 2 cut(s) 65, 478
Tru1I TTAA 4 cut(s) 141, 176, 233, 951
Tru9I TTAA 4 cut(s) 141, 176, 233, 951
TscAI CASTG 2 cut(s) 106, 1015
TseFI GTSAC 2 cut(s) 20, 51
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 4 cut(s) 632, 866, 1046, 1179
TspMI CCCGGG 1 cut(s) 832
TspRI CASTG 2 cut(s) 106, 1015
Vha464I CTTAAG 2 cut(s) 140, 950
XceI RCATGY 1 cut(s) 907
XmaI CCCGGG 1 cut(s) 832
XspI CTAG 6 cut(s) 495, 735, 792, 1065, 1071, 1139
ZraI GACGTC 1 cut(s) 1018
ZrmI AGTACT 2 cut(s) 1054, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.