pycom15g06010
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
3653530 .. 3655129
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g06010.1

Sequence Viewer

Length: 1266 bp
ATGGGGAGAGCTCCTTGCTGTGATAAAGCCAACGTGAAGAGAGGTCCATGGTCACCTGAAGAAGATGCCAAGCTCAAGTCTTACATCGAGCAACATGGCACCGGCGGTAACTGGATCGCTTTGCCACAAAAGATCGGGCTTAAGAGGTGTGGGAAGAGCTGCCGGCTTAGATGGTTAAATTATCTCCGCCCAAATATCAAGCATGGAGGGTTTTCTGAAGAAGAAGACAACATAATTTGCAGCCTCTACATAAGTATTGGGAGCAGGTGGTCTATAATTGCAGCACAACTGCCAGGAAGAACTGACAATGATATAAAGAACTACTGGAACACAAGGCTGAAGAAAAAGCTTCTTGGTAGACAGCGGAAAGAACATCAGCTGGCTCGTAAATCGGGCCTAGTTAAACAAGACATCATCAAAAGGTCAGGCGGTGTTGGGGGAAACAGTAACTCCCATTCTGCCATTCTGGCCGCAGACGGTCAAAACTCTTACTGGCCGGAGCTTCCAGTGCTTGCAGCACCCACAGTACTACCACAACAACAACAACAGCCTTGCTTTAATGACCATGCTTCTATCAGAAAGTTGCTCATCAAGCTTGGAGGGAGGTTTAGTTCTGATATTAATCATAATCATGATACTAATCAAGCTACCCAAGATAGCTCCACCGATATTCAACCAACCTATCAAGTTCTTGATGATAATAATAACATTCCCTATGCCGCTACTGCTGTTACTCCTACTCATCAAATGGATGAGCACTATTCTGGAAAGAACATGCAAAGTCTATTAGTTCCTCGACATGGGATTCATGCTCTCAACAATTCTTCTGCTCCTGTGGCCTTAAGCAACATTGATGTCATTAGCCCTCATCAATTTGCACAAACACATTACATGGTCAACACGGATAATATTGATGGAGCTGGTAATGGTATAATGCATAATATGTTTCAAGGGCAAGGTGGTAATTATGTGACTGATCATCTAAAGGACATGGCGGTGTACAACAACAACAACACTGACAACCAACAGAGATTTGATGGGATGGAGTTCTTGTATGGCGATGAGATGATGATTATGAATAATAGAATTATTAGTAGTTATGGAGAAAGTATTGGGTGGGGTGAGATGCTGGGATGTCCTCCTGTGGCCTCCTCCTCAGACGACTATAATGCCGGCATGGACCGACTGATGCCGGCCGCACCCGTCCAAGAATGTGCTTTCGCCAACGACCAGTTGATGAGTAGTTACCCTGGGGCGCCATTATAA

Protein Analysis

422

Amino Acids

46.65

Weight (kDa)

6.73

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 2.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 5.1e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 1.1e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 3.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1264
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 2 cut(s) 98, 1255
AccI GTMKAC 1 cut(s) 358
AciI CCGC 8 cut(s) 105, 187, 364, 429, 471, 720, 995, 1197
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 3 cut(s) 468, 494, 1194
AcuI CTGAAG 3 cut(s) 78, 237, 359
AcyI GRCGYC 1 cut(s) 1256
AfaI GTAC 2 cut(s) 528, 1001
AfiI CCNNNNNNNGG 1 cut(s) 800
AflII CTTAAG 2 cut(s) 140, 841
AgsI TTSAA 2 cut(s) 674, 950
AjnI CCWGG 2 cut(s) 292, 1249
AloI GAACNNNNNNTCC 2 cut(s) 595, 627
Alw21I GWGCWC 2 cut(s) 13, 759
AlwI GGATC 1 cut(s) 122
AoxI GGCC 6 cut(s) 394, 468, 494, 837, 1146, 1194
ApeKI GCWGC 4 cut(s) 159, 240, 281, 515
AseI ATTAAT 1 cut(s) 621
AspLEI GCGC 1 cut(s) 1258
AspS9I GGNCC 3 cut(s) 44, 394, 1180
AsuHPI GGTGA 2 cut(s) 45, 1133
AvaII GGWCC 2 cut(s) 44, 1180
BanI GGYRCC 2 cut(s) 98, 1255
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 13, 759
BbvI GCAGC 4 cut(s) 146, 252, 293, 527
BccI CCATC 4 cut(s) 165, 908, 1031, 1036
BcgI CGANNNNNNTGC 2 cut(s) 1151, 1185
BciT130I CCWGG 2 cut(s) 294, 1251
BclI TGATCA 1 cut(s) 976
BfaI CTAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 1259
BfrI CTTAAG 2 cut(s) 140, 841
BfuAI ACCTGC 1 cut(s) 255
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 7 cut(s) 160, 241, 282, 471, 516, 720, 1197
BlsI GCNGC 7 cut(s) 161, 242, 283, 472, 517, 721, 1198
BmcAI AGTACT 1 cut(s) 528
Bme1390I CCNGG 2 cut(s) 294, 1251
Bme18I GGWCC 2 cut(s) 44, 1180
BmgT120I GGNCC 3 cut(s) 44, 394, 1180
BmiI GGNNCC 2 cut(s) 100, 1257
BmrFI CCNGG 2 cut(s) 294, 1251
BmsI GCATC 3 cut(s) 55, 1116, 1179
BpiI GAAGAC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 2 cut(s) 621, 639
BsaHI GRCGYC 1 cut(s) 1256
BsaJI CCNNGG 3 cut(s) 47, 1249, 1250
BsaXI ACNNNNNCTCC 6 cut(s) 434, 464, 595, 625, 1037, 1067
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse118I RCCGGY 4 cut(s) 101, 162, 1172, 1192
Bse1I ACTGG 5 cut(s) 116, 329, 497, 506, 1231
Bse8I GATNNNNATC 2 cut(s) 621, 639
BseBI CCWGG 2 cut(s) 294, 1251
BseDI CCNNGG 3 cut(s) 47, 1249, 1250
BseGI GGATG 3 cut(s) 757, 1047, 1139
BseJI GATNNNNATC 2 cut(s) 621, 639
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMII CTCAG 1 cut(s) 1170
BseNI ACTGG 5 cut(s) 116, 329, 497, 506, 1231
BseRI GAGGAG 2 cut(s) 1141, 1144
BseX3I CGGCCG 1 cut(s) 1194
BseXI GCAGC 4 cut(s) 146, 252, 293, 527
BseYI CCCAGC 1 cut(s) 1129
Bsh1285I CGRYCG 1 cut(s) 1197
BshFI GGCC 6 cut(s) 396, 470, 496, 839, 1148, 1196
BshNI GGYRCC 2 cut(s) 98, 1255
BsiEI CGRYCG 1 cut(s) 1197
BsiHKAI GWGCWC 2 cut(s) 13, 759
BsiSI CCGG 5 cut(s) 102, 163, 497, 1173, 1193
BslI CCNNNNNNNGG 1 cut(s) 800
BsnI GGCC 6 cut(s) 396, 470, 496, 839, 1148, 1196
Bsp1286I GDGCHC 2 cut(s) 13, 759
Bsp1407I TGTACA 1 cut(s) 999
Bsp143I GATC 3 cut(s) 114, 132, 976
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 8 cut(s) 105, 187, 364, 429, 471, 720, 995, 1197
BspANI GGCC 6 cut(s) 396, 470, 496, 839, 1148, 1196
BspCNI CTCAG 1 cut(s) 1169
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 100, 1257
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 149
BspT107I GGYRCC 2 cut(s) 98, 1255
BspTI CTTAAG 2 cut(s) 140, 841
BsrFI RCCGGY 4 cut(s) 101, 162, 1172, 1192
BsrGI TGTACA 1 cut(s) 999
BsrI ACTGG 5 cut(s) 116, 329, 497, 506, 1231
BssAI RCCGGY 4 cut(s) 101, 162, 1172, 1192
BssECI CCNNGG 3 cut(s) 47, 1249, 1250
BssMI GATC 3 cut(s) 114, 132, 976
BssNI GRCGYC 1 cut(s) 1256
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 294, 1251
Bst4CI ACNGT 3 cut(s) 446, 479, 526
Bst6I CTCTTC 2 cut(s) 32, 149
BstACI GRCGYC 1 cut(s) 1256
BstAFI CTTAAG 2 cut(s) 140, 841
BstAUI TGTACA 1 cut(s) 999
BstC8I GCNNGC 5 cut(s) 164, 381, 513, 1174, 1194
BstDEI CTNAG 2 cut(s) 167, 1156
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 3 cut(s) 757, 1047, 1139
BstH2I RGCGCY 1 cut(s) 1259
BstHHI GCGC 1 cut(s) 1258
BstKTI GATC 3 cut(s) 117, 135, 979
BstMBI GATC 3 cut(s) 114, 132, 976
BstMCI CGRYCG 1 cut(s) 1197
BstMWI GCNNNNNNNGC 5 cut(s) 467, 508, 592, 725, 836
BstNI CCWGG 2 cut(s) 294, 1251
BstNSI RCATGY 1 cut(s) 778
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 292, 1249
BstV1I GCAGC 4 cut(s) 146, 252, 293, 527
BstV2I GAAGAC 1 cut(s) 231
BstZI CGGCCG 1 cut(s) 1194
BsuRI GGCC 6 cut(s) 396, 470, 496, 839, 1148, 1196
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 1074
BtsCI GGATG 3 cut(s) 757, 1047, 1139
BtsIMutI CAGTG 2 cut(s) 513, 1014
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 5 cut(s) 164, 381, 513, 1174, 1194
CciI TCATGA 1 cut(s) 631
CfoI GCGC 1 cut(s) 1258
Cfr10I RCCGGY 4 cut(s) 101, 162, 1172, 1192
Cfr13I GGNCC 3 cut(s) 44, 394, 1180
Csp6I GTAC 2 cut(s) 527, 1000
CviQI GTAC 2 cut(s) 527, 1000
DdeI CTNAG 2 cut(s) 167, 1156
DinI GGCGCC 1 cut(s) 1257
DpnI GATC 3 cut(s) 116, 134, 978
DpnII GATC 3 cut(s) 114, 132, 976
EaeI YGGCCR 3 cut(s) 468, 494, 1194
EagI CGGCCG 1 cut(s) 1194
Eam1104I CTCTTC 2 cut(s) 32, 149
EarI CTCTTC 2 cut(s) 32, 149
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 11
EclXI CGGCCG 1 cut(s) 1194
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 44, 1180
Eco52I CGGCCG 1 cut(s) 1194
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 3 cut(s) 78, 237, 359
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 292, 1249
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 1257
EheI GGCGCC 1 cut(s) 1257
ErhI CCWWGG 1 cut(s) 47
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 7 cut(s) 160, 241, 282, 471, 516, 720, 1197
FokI GGATG 3 cut(s) 764, 1054, 1146
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 7 cut(s) 160, 241, 282, 471, 516, 720, 1197
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 1257
GluI GCNGC 7 cut(s) 160, 241, 282, 471, 516, 720, 1197
GsaI CCCAGC 1 cut(s) 1133
HaeII RGCGCY 1 cut(s) 1259
HaeIII GGCC 6 cut(s) 396, 470, 496, 839, 1148, 1196
HapII CCGG 5 cut(s) 102, 163, 497, 1173, 1193
HhaI GCGC 1 cut(s) 1258
Hin1I GRCGYC 1 cut(s) 1256
Hin6I GCGC 1 cut(s) 1256
HinP1I GCGC 1 cut(s) 1256
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HindIII AAGCTT 2 cut(s) 347, 593
HinfI GANTC 1 cut(s) 805
HpaII CCGG 5 cut(s) 102, 163, 497, 1173, 1193
HphI GGTGA 2 cut(s) 45, 1133
Hpy166II GTNNAC 3 cut(s) 359, 898, 1000
Hpy188I TCNGA 4 cut(s) 217, 578, 616, 1159
Hpy188III TCNNGA 3 cut(s) 632, 692, 765
Hpy8I GTNNAC 3 cut(s) 359, 898, 1000
HpyCH4III ACNGT 3 cut(s) 446, 479, 526
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 240, 281, 515, 778, 878, 937
HpyF10VI GCNNNNNNNGC 5 cut(s) 467, 508, 592, 725, 836
HpyF3I CTNAG 2 cut(s) 167, 1156
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 1256
HspAI GCGC 1 cut(s) 1256
KasI GGCGCC 1 cut(s) 1255
KroI GCCGGC 3 cut(s) 162, 1172, 1192
KroNI GCCGGC 3 cut(s) 164, 1174, 1194
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 3 cut(s) 114, 132, 976
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 6 cut(s) 16, 261, 499, 665, 835, 917
Lsp1109I GCAGC 4 cut(s) 146, 252, 293, 527
LweI GCATC 3 cut(s) 55, 1116, 1179
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 6 cut(s) 51, 107, 446, 730, 970, 1244
MalI GATC 3 cut(s) 116, 134, 978
MboI GATC 3 cut(s) 114, 132, 976
MhlI GDGCHC 2 cut(s) 13, 759
MluCI AATT 7 cut(s) 178, 234, 276, 820, 872, 964, 1086
Mly113I GGCGCC 1 cut(s) 1256
Mph1103I ATGCAT 1 cut(s) 939
MroNI GCCGGC 3 cut(s) 162, 1172, 1192
MseI TTAA 6 cut(s) 141, 176, 402, 558, 621, 842
MslI CAYNNNNRTG 2 cut(s) 630, 995
MspA1I CMGCKG 2 cut(s) 364, 379
MspCI CTTAAG 2 cut(s) 140, 841
MspI CCGG 5 cut(s) 102, 163, 497, 1173, 1193
MspR9I CCNGG 2 cut(s) 294, 1251
MvaI CCWGG 2 cut(s) 294, 1251
MwoI GCNNNNNNNGC 5 cut(s) 467, 508, 592, 725, 836
NaeI GCCGGC 3 cut(s) 164, 1174, 1194
NarI GGCGCC 1 cut(s) 1256
NcoI CCATGG 1 cut(s) 47
NdeII GATC 3 cut(s) 114, 132, 976
NgoMIV GCCGGC 3 cut(s) 162, 1172, 1192
NlaIV GGNNCC 2 cut(s) 100, 1257
NmuCI GTSAC 2 cut(s) 51, 970
NsiI ATGCAT 1 cut(s) 939
NspI RCATGY 1 cut(s) 778
PagI TCATGA 1 cut(s) 631
PaqCI CACCTGC 1 cut(s) 255
PasI CCCWGGG 1 cut(s) 1250
PciSI GCTCTTC 1 cut(s) 149
PdiI GCCGGC 3 cut(s) 164, 1174, 1194
PfeI GAWTC 1 cut(s) 805
PkrI GCNGC 7 cut(s) 161, 242, 283, 472, 517, 721, 1198
PluTI GGCGCC 1 cut(s) 1259
PshBI ATTAAT 1 cut(s) 621
PsiI TTATAA 1 cut(s) 1264
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 292, 1249
PspEI GGTNACC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 1129
PspGI CCWGG 2 cut(s) 292, 1249
PspN4I GGNNCC 2 cut(s) 100, 1257
PspPI GGNCC 3 cut(s) 44, 394, 1180
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 2 cut(s) 528, 1001
RsaNI GTAC 2 cut(s) 527, 1000
RseI CAYNNNNRTG 2 cut(s) 630, 995
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 6 cut(s) 141, 176, 402, 558, 621, 842
SatI GCNGC 7 cut(s) 160, 241, 282, 471, 516, 720, 1197
Sau3AI GATC 3 cut(s) 114, 132, 976
Sau96I GGNCC 3 cut(s) 44, 394, 1180
ScaI AGTACT 1 cut(s) 528
ScrFI CCNGG 2 cut(s) 294, 1251
SduI GDGCHC 2 cut(s) 13, 759
SfaNI GCATC 3 cut(s) 55, 1116, 1179
SfoI GGCGCC 1 cut(s) 1257
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 2 cut(s) 44, 1180
SmiMI CAYNNNNRTG 2 cut(s) 630, 995
SmlI CTYRAG 3 cut(s) 74, 140, 841
SmoI CTYRAG 3 cut(s) 74, 140, 841
Sse9I AATT 7 cut(s) 178, 234, 276, 820, 872, 964, 1086
SsiI CCGC 8 cut(s) 105, 187, 364, 429, 471, 720, 995, 1197
SspDI GGCGCC 1 cut(s) 1255
SspI AATATT 1 cut(s) 910
SspMI CTAG 1 cut(s) 398
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 292, 1249
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 446, 479, 526
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 87, 796
TaqII GACCGA 1 cut(s) 1197
TasI AATT 7 cut(s) 178, 234, 276, 820, 872, 964, 1086
TatI WGTACW 2 cut(s) 526, 999
TauI GCSGC 3 cut(s) 473, 722, 1199
TfiI GAWTC 1 cut(s) 805
Tru1I TTAA 6 cut(s) 141, 176, 402, 558, 621, 842
Tru9I TTAA 6 cut(s) 141, 176, 402, 558, 621, 842
TscAI CASTG 2 cut(s) 513, 1021
TseFI GTSAC 2 cut(s) 51, 970
TseI GCWGC 4 cut(s) 159, 240, 281, 515
Tsp45I GTSAC 2 cut(s) 51, 970
TspDTI ATGAA 2 cut(s) 797, 1091
TspGWI ACGGA 1 cut(s) 917
TspRI CASTG 2 cut(s) 513, 1021
Vha464I CTTAAG 2 cut(s) 140, 841
VpaK11BI GGWCC 2 cut(s) 44, 1180
VspI ATTAAT 1 cut(s) 621
XceI RCATGY 1 cut(s) 778
XmiI GTMKAC 1 cut(s) 358
XspI CTAG 1 cut(s) 398
ZrmI AGTACT 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.