RchiOBHm_Chr2g0109131
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003649
Physical Location & Seq
Reverse (-)
20537702 .. 20539215
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48298

Sequence Viewer

Length: 1080 bp
ATGGGGAAAGCTCCTTGCTGTGACAAAACCAAGGTCAAGAAAGGCCCATGGTCACCTGAAGAAGATGCCAAACTCAAGTCTTACATTGACAAGCATGGCACCGGTGGCAACTGGATTGCCTTGCCGCAGAAGATAGGTCTTAAAAGATGTGGGAAGAGCTGTCGGCTGAGATGGTTGAATTATCTCCGGCCCAATATCAAACACGGTGGGTTCTCTGAGGAAGAAGATAACATCATCTGCAGCCTCTATATCAATATTGGAAGCAGGTGGTCTATCATTGCAGCCCAATTACCCGGGCGAACTGATAATGATATTAAGAATTACTGGAACACAAGACTGAAGAAGAAGCTTTTGGGCAAGCAGCGGAAAGAACAACAGGCACAGAATCGTAAAGCCGCCGCCAGCCTAAAGCAAGAGATCAAGAGATCAAGTACTACAACAAACTTTCATCTTCCTCCTGATGATTTTGTGAACCAAGTAAACCCTTACTGGGCACCAGAGCTTCCTGTAGTGCTGCCAGTGATGAGTTATCAAACCCATGACGCTCAAGTACTTGATGACCACCAGGCATCCATTAAGAACATGCTGATCAAACTTGGAGGAAGATTTTCTGACACCACCAATTCTATGTATTCGCCTATTGATCACATTTCCTCTACCTCATCACATCAGTTCTATCAGAACTCCGGTATTGATCATATGCTTGCTTGTTCACCAGCAGCCAACTCCAACTATGCTCAATTGGGTCCAAGTCCAAGTCCAAGTCCGACCATGTTTCATGGGGTTGATCATCAGAGTGATCTAGAGGCAGAGCTAAGCGAATTGATTTTCGGAAACAGCCAGCCTCATCAACAGTATGATGGTTTGGCTGGCTTTTATCAAATGGAGACTTTGAATAATGGTAGCACTGGAGTGACTACTAGTACTTCTGCAGAGAGTGAAATTAGTTGGGGAGACATAAGCTCCCTGGTTTATAGTACAACTACTCCTTTGGTTTCTGAGTACGAAAATAGTTGTCAACAAGGCGTGCGGCCATCAGATTCTGCTTTTGCCGAGTCAACCTACTTCGGCATGAAATAG

Protein Analysis

359

Amino Acids

39.94

Weight (kDa)

7.15

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 5.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 4.6e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 8.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 2 cut(s) 98, 493
AciI CCGC 5 cut(s) 125, 364, 396, 399, 1030
AcoI YGGCCR 1 cut(s) 1031
AcuI CTGAAG 2 cut(s) 78, 359
AfaI GTAC 5 cut(s) 433, 552, 925, 979, 1004
AfiI CCNNNNNNNGG 1 cut(s) 490
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 2 cut(s) 178, 895
AhlI ACTAGT 1 cut(s) 920
AjnI CCWGG 2 cut(s) 564, 966
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AleI CACNNNNGTG 1 cut(s) 911
AluBI AGCT 6 cut(s) 11, 159, 349, 502, 814, 963
AluI AGCT 6 cut(s) 11, 159, 349, 502, 814, 963
Alw26I GTCTC 2 cut(s) 881, 948
AlwNI CAGNNNCTG 1 cut(s) 1043
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 3 cut(s) 43, 188, 1031
ApeKI GCWGC 5 cut(s) 240, 281, 361, 514, 719
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AsiGI ACCGGT 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 607
AspS9I GGNCC 3 cut(s) 44, 189, 746
AsuC2I CCSGG 2 cut(s) 294, 295
AsuHPI GGTGA 2 cut(s) 45, 705
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 496
BanI GGYRCC 2 cut(s) 98, 493
BbvI GCAGC 5 cut(s) 252, 293, 373, 501, 731
BccI CCATC 3 cut(s) 165, 854, 1042
BciT130I CCWGG 2 cut(s) 566, 968
BclI TGATCA 4 cut(s) 588, 643, 694, 787
BcnI CCSGG 2 cut(s) 294, 295
BcoDI GTCTC 2 cut(s) 881, 948
BcuI ACTAGT 1 cut(s) 920
BfaI CTAG 2 cut(s) 803, 921
BfmI CTRYAG 3 cut(s) 238, 507, 930
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1031
BlpI GCTNAGC 1 cut(s) 815
BlsI GCNGC 9 cut(s) 126, 242, 283, 363, 397, 400, 516, 721, 1032
BmcAI AGTACT 3 cut(s) 433, 552, 925
Bme1390I CCNGG 4 cut(s) 294, 295, 566, 968
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 3 cut(s) 44, 189, 746
BmiI GGNNCC 3 cut(s) 100, 495, 747
BmrFI CCNGG 4 cut(s) 294, 295, 566, 968
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 55, 578
BmuI ACTGGG 1 cut(s) 499
BpmI CTGGAG 1 cut(s) 930
Bpu1102I GCTNAGC 1 cut(s) 815
BpuEI CTTGAG 2 cut(s) 59, 531
BpuMI CCSGG 2 cut(s) 294, 295
BsaJI CCNNGG 4 cut(s) 30, 47, 293, 966
BsaWI WCCGGW 2 cut(s) 101, 686
BsaXI ACNNNNNCTCC 4 cut(s) 947, 970, 977, 1000
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 5 cut(s) 116, 329, 494, 518, 913
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 566, 968
BseDI CCNNGG 4 cut(s) 30, 47, 293, 966
BseGI GGATG 1 cut(s) 569
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 158, 207, 990
BseNI ACTGG 5 cut(s) 116, 329, 494, 518, 913
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 5 cut(s) 252, 293, 373, 501, 731
BshFI GGCC 3 cut(s) 45, 190, 1033
BshNI GGYRCC 2 cut(s) 98, 493
BshTI ACCGGT 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 4 cut(s) 102, 187, 294, 687
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 2 cut(s) 881, 948
BsnI GGCC 3 cut(s) 45, 190, 1033
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 7 cut(s) 417, 425, 588, 643, 694, 787, 799
Bsp1720I GCTNAGC 1 cut(s) 815
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 5 cut(s) 125, 364, 396, 399, 1030
BspANI GGCC 3 cut(s) 45, 190, 1033
BspCNI CTCAG 3 cut(s) 159, 208, 991
BspLI GGNNCC 3 cut(s) 100, 495, 747
BspMAI CTGCAG 2 cut(s) 242, 934
BspMI ACCTGC 1 cut(s) 255
BspQI GCTCTTC 1 cut(s) 149
BspT107I GGYRCC 2 cut(s) 98, 493
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 5 cut(s) 116, 329, 494, 518, 913
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 30, 47, 293, 966
BssMI GATC 7 cut(s) 417, 425, 588, 643, 694, 787, 799
BssT1I CCWWGG 2 cut(s) 30, 47
Bst2UI CCWGG 2 cut(s) 566, 968
Bst4CI ACNGT 2 cut(s) 206, 855
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 6 cut(s) 359, 403, 705, 842, 871, 1028
BstDEI CTNAG 4 cut(s) 167, 216, 815, 999
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 569
BstKTI GATC 7 cut(s) 420, 428, 591, 646, 697, 790, 802
BstMAI GTCTC 2 cut(s) 881, 948
BstMBI GATC 7 cut(s) 417, 425, 588, 643, 694, 787, 799
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 2 cut(s) 566, 968
BstNSI RCATGY 1 cut(s) 586
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 4 cut(s) 292, 293, 564, 966
BstSFI CTRYAG 3 cut(s) 238, 507, 930
BstSLI GKGCMC 1 cut(s) 496
BstV1I GCAGC 5 cut(s) 252, 293, 373, 501, 731
BsuRI GGCC 3 cut(s) 45, 190, 1033
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 569
BtsIMutI CAGTG 2 cut(s) 525, 906
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 6 cut(s) 359, 403, 705, 842, 871, 1028
CaiI CAGNNNCTG 1 cut(s) 1043
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 3 cut(s) 44, 189, 746
Cfr9I CCCGGG 1 cut(s) 293
CseI GACGC 1 cut(s) 551
Csp6I GTAC 5 cut(s) 432, 551, 924, 978, 1003
CspAI ACCGGT 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 7 cut(s) 48, 95, 539, 583, 772, 779, 1072
CviQI GTAC 5 cut(s) 432, 551, 924, 978, 1003
DdeI CTNAG 4 cut(s) 167, 216, 815, 999
DpnI GATC 7 cut(s) 419, 427, 590, 645, 696, 789, 801
DpnII GATC 7 cut(s) 417, 425, 588, 643, 694, 787, 799
EaeI YGGCCR 1 cut(s) 1031
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 30, 47
Eco47I GGWCC 1 cut(s) 746
Eco57I CTGAAG 2 cut(s) 78, 359
Eco88I CYCGRG 1 cut(s) 293
Eco91I GGTNACC 1 cut(s) 51
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 564, 966
EcoT14I CCWWGG 2 cut(s) 30, 47
ErhI CCWWGG 2 cut(s) 30, 47
FaeI CATG 7 cut(s) 51, 98, 542, 586, 775, 782, 1075
FatI CATG 7 cut(s) 47, 94, 538, 582, 771, 778, 1071
FauNDI CATATG 1 cut(s) 699
FbaI TGATCA 4 cut(s) 588, 643, 694, 787
Fnu4HI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1031
FokI GGATG 1 cut(s) 556
Fsp4HI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1031
FspBI CTAG 2 cut(s) 803, 921
GluI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1031
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 3 cut(s) 45, 190, 1033
HapII CCGG 4 cut(s) 102, 187, 294, 687
HgaI GACGC 1 cut(s) 551
Hin1II CATG 7 cut(s) 51, 98, 542, 586, 775, 782, 1075
HincII GTYRAC 2 cut(s) 1019, 1059
HindII GTYRAC 2 cut(s) 1019, 1059
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 385, 1040, 1055
HpaII CCGG 4 cut(s) 102, 187, 294, 687
HphI GGTGA 2 cut(s) 45, 705
Hpy166II GTNNAC 5 cut(s) 472, 481, 713, 1019, 1059
Hpy188I TCNGA 8 cut(s) 217, 613, 681, 768, 795, 833, 1000, 1039
Hpy188III TCNNGA 4 cut(s) 37, 421, 458, 803
Hpy8I GTNNAC 5 cut(s) 472, 481, 713, 1019, 1059
HpyCH4III ACNGT 2 cut(s) 206, 855
HpyCH4V TGCA 3 cut(s) 240, 281, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 4 cut(s) 167, 216, 815, 999
Hsp92II CATG 7 cut(s) 51, 98, 542, 586, 775, 782, 1075
Ksp22I TGATCA 4 cut(s) 588, 643, 694, 787
Kzo9I GATC 7 cut(s) 417, 425, 588, 643, 694, 787, 799
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 16, 968
Lsp1109I GCAGC 5 cut(s) 252, 293, 373, 501, 731
LweI GCATC 2 cut(s) 55, 578
MaeI CTAG 2 cut(s) 803, 921
MaeIII GTNAC 3 cut(s) 20, 51, 913
MalI GATC 7 cut(s) 419, 427, 590, 645, 696, 789, 801
MboI GATC 7 cut(s) 417, 425, 588, 643, 694, 787, 799
MfeI CAATTG 1 cut(s) 740
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 7 cut(s) 178, 287, 319, 622, 740, 821, 942
MlyI GAGTC 1 cut(s) 1064
MmeI TCCRAC 2 cut(s) 753, 791
MnlI CCTC 8 cut(s) 211, 254, 465, 593, 664, 670, 799, 855
MroXI GAANNNNTTC 1 cut(s) 607
MseI TTAA 3 cut(s) 141, 315, 576
MslI CAYNNNNRTG 2 cut(s) 795, 911
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 4 cut(s) 102, 187, 294, 687
MspR9I CCNGG 4 cut(s) 294, 295, 566, 968
MunI CAATTG 1 cut(s) 740
MvaI CCWGG 2 cut(s) 566, 968
MwoI GCNNNNNNNGC 1 cut(s) 105
NciI CCSGG 2 cut(s) 294, 295
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 699
NdeII GATC 7 cut(s) 417, 425, 588, 643, 694, 787, 799
NlaIII CATG 7 cut(s) 51, 98, 542, 586, 775, 782, 1075
NlaIV GGNNCC 3 cut(s) 100, 495, 747
NmeAIII GCCGAG 1 cut(s) 1078
NmuCI GTSAC 3 cut(s) 20, 51, 913
NspI RCATGY 1 cut(s) 586
OliI CACNNNNGTG 1 cut(s) 911
PaqCI CACCTGC 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 2 cut(s) 385, 1040
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 9 cut(s) 126, 242, 283, 363, 397, 400, 516, 721, 1032
PleI GAGTC 1 cut(s) 1063
PpsI GAGTC 1 cut(s) 1063
Psp6I CCWGG 2 cut(s) 564, 966
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 2 cut(s) 564, 966
PspN4I GGNNCC 3 cut(s) 100, 495, 747
PspPI GGNCC 3 cut(s) 44, 189, 746
PstI CTGCAG 2 cut(s) 242, 934
PstNI CAGNNNCTG 1 cut(s) 1043
RsaI GTAC 5 cut(s) 433, 552, 925, 979, 1004
RsaNI GTAC 5 cut(s) 432, 551, 924, 978, 1003
RseI CAYNNNNRTG 2 cut(s) 795, 911
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 3 cut(s) 141, 315, 576
SatI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1031
Sau3AI GATC 7 cut(s) 417, 425, 588, 643, 694, 787, 799
Sau96I GGNCC 3 cut(s) 44, 189, 746
ScaI AGTACT 3 cut(s) 433, 552, 925
SchI GAGTC 1 cut(s) 1064
ScrFI CCNGG 4 cut(s) 294, 295, 566, 968
SduI GDGCHC 1 cut(s) 496
SfaNI GCATC 2 cut(s) 55, 578
SfcI CTRYAG 3 cut(s) 238, 507, 930
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 746
SmaI CCCGGG 1 cut(s) 295
SmiMI CAYNNNNRTG 2 cut(s) 795, 911
SmlI CTYRAG 2 cut(s) 74, 546
SmoI CTYRAG 2 cut(s) 74, 546
SpeI ACTAGT 1 cut(s) 920
Sse9I AATT 7 cut(s) 178, 287, 319, 622, 740, 821, 942
SsiI CCGC 5 cut(s) 125, 364, 396, 399, 1030
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 803, 921
StyD4I CCNGG 4 cut(s) 292, 293, 564, 966
StyI CCWWGG 2 cut(s) 30, 47
TaaI ACNGT 2 cut(s) 206, 855
TasI AATT 7 cut(s) 178, 287, 319, 622, 740, 821, 942
TatI WGTACW 4 cut(s) 431, 550, 923, 977
TauI GCSGC 4 cut(s) 127, 398, 401, 1033
TfiI GAWTC 2 cut(s) 385, 1040
Tru1I TTAA 3 cut(s) 141, 315, 576
Tru9I TTAA 3 cut(s) 141, 315, 576
TscAI CASTG 2 cut(s) 525, 913
TseFI GTSAC 3 cut(s) 20, 51, 913
TseI GCWGC 5 cut(s) 240, 281, 361, 514, 719
Tsp45I GTSAC 3 cut(s) 20, 51, 913
TspDTI ATGAA 2 cut(s) 437, 767
TspMI CCCGGG 1 cut(s) 293
TspRI CASTG 2 cut(s) 525, 913
VpaK11BI GGWCC 1 cut(s) 746
XbaI TCTAGA 1 cut(s) 802
XceI RCATGY 1 cut(s) 586
XmaI CCCGGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 2 cut(s) 803, 921
ZrmI AGTACT 3 cut(s) 433, 552, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.