Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003649

Physical Location & Seq

Genomic Coordinates Reverse (-)

12411346 .. 12412722

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTCAAGAAAGGCCCTTGGTCACCAGAAGAAGATGCCACCCTCAAGGCTTACATGGAGAAGCACGGCAGCGGCGGCAACTGGATTGCCCTGCCCCAGAAGATAGGTCAGGAGCTAATCACTTCAAATTCTCCTCACCCCAAGGAAGAAGATAACATCATCTGCAGCCTCTACATGAGTATTGGAAGCAGGTGGTCTATCATTGCAGCCCAGTTACCAGGGCGAACGGACAACGATATTAAGAACTACTGGAACACAAGGCTGAAGAAAAAGCTTTTGGGCAGGCAGCGCAAACAACAACAGGTTCAGCAAAGTCGCCGCACCGCCAGCTTTAAGCAAGAGATGAACAAAAGATCAGAAAATATTGCAAATTTTATTAATATCCCTGCTGGGTTTGACAACCAAAACCCTTATGACTTGCCAGAGCTACCAGTAGTCCCAGTGGCTAATTATCAAACACATAACCCTCAACTCATCAAGGATCAGGCTTCAATTAAGAATATGCTCATCAATCTTGGAGGAAGATTTTCCCATGATTCTGACACTAGCAATACAAGTTTTCAGTACCCTATCGATATTTTGTCAACCTCATCCTCAGATCAACAATTTTATCAGAGCTCCATTAATCTACTCAATTGTACTTCAGCAGCCAACAGCAATAACTATTCTCAATTTCCAAGCACACACTGTGATGCTAGTAACGGTACTGGGGGTTCAAGTAGTCCAACCATGTTTCACGGGCTCAACGATCAGAACAACAACCTACAGTTTGATCATCTTCACCAGCTAACTGAACTGGAGGTTTACGACAACAATTTTGCTCACCAACATCAGCAATTGGGTGGTTTTTATTATCAAGCCACCACGGAGACGTTGAACAATGGTAGCACTGCAGGGACTAGTACTGCTTCTGCAGAGAGTGAAATTAGTTGGGGAGACATAAATTCCCTGGTTTATAGTACTCAAATGGTTGCAGGCTATGAAACCAGCTGTCCACAAGCAGTCACAGTACCACCAGGTCTTCATACTGTTTTTGCAGAGTCGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

360

Amino Acids

39.77

Weight (kDa)

5.87

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49690 AT5G65790
fragaria_vesca	FvH4_1g18500 FvH4_1g18500 FvH4_2g32440
malus_domestica	MD02G1191000.v1.1 MD08G1076200.v1.1 MD15G1063300.v1.1 MD15G1302300.v1.1
prunus_persica	Prupe.1G417400_v2.0.a1 Prupe.6G214300_v2.0.a1
pyrus_communis	pycom02g15540 pycom08g06310 pycom15g06010 pycom15g26540
rosa_chinensis	RchiOBHm_Chr2g0109131 RchiOBHm_Chr6g0310231
rosa_laevigata	RLG00000010497 RLG00000017715
rosa_multiflora	Rmu_sc0000186.1_g000014 Rmu_sc0002348.1_g000027
rosa_roxburghii	Rroxscaffold_2G00134480 Rroxscaffold_7G00158720
rosa_rugosa	Rorug02G0157300 Rorug06G0378300 Rorug06G0378400
rosa_samantha	Rh2AG209400 Rh2BG219800 Rh2CG211900 Rh2DG215500 Rh6AG492500 Rh6BG502200 Rh6CG507100 Rh6DG493300
rosa_wichuraiana	Rw6G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	1073
AciI	CCGC	4 cut(s)	102, 105, 349, 354
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	3 cut(s)	157, 400, 973
AcuI	CTGAAG	2 cut(s)	314, 657
AdeI	CACNNNGTG	1 cut(s)	719
AfaI	GTAC	6 cut(s)	596, 670, 736, 934, 991, 1041
AgsI	TTSAA	4 cut(s)	156, 522, 747, 907
AhlI	ACTAGT	1 cut(s)	929
AjnI	CCWGG	3 cut(s)	247, 978, 1045
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	8 cut(s)	11, 145, 304, 360, 457, 648, 817, 1020
AluI	AGCT	8 cut(s)	11, 145, 304, 360, 457, 648, 817, 1020
Alw21I	GWGCWC	2 cut(s)	13, 650
Alw26I	GTCTC	2 cut(s)	893, 960
AlwI	GGATC	1 cut(s)	519
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	5 cut(s)	99, 195, 236, 316, 677
ApoI	RAATTY	3 cut(s)	157, 400, 973
ArsI	GACNNNNNNTTYG	4 cut(s)	18, 50, 830, 862
AseI	ATTAAT	2 cut(s)	408, 654
Asp700I	GAANNNNTTC	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	45, 158, 803, 845
BanII	GRGCYC	3 cut(s)	13, 650, 774
BbsI	GAAGAC	1 cut(s)	1043
Bbv12I	GWGCWC	2 cut(s)	13, 650
BbvI	GCAGC	5 cut(s)	111, 207, 248, 328, 689
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	3 cut(s)	249, 980, 1047
BclI	TGATCA	1 cut(s)	802
BcoDI	GTCTC	2 cut(s)	893, 960
BcuI	ACTAGT	1 cut(s)	929
BfaI	CTAG	3 cut(s)	576, 726, 930
BfmI	CTRYAG	4 cut(s)	193, 794, 921, 942
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	8 cut(s)	100, 103, 106, 196, 237, 317, 349, 678
BlsI	GCNGC	8 cut(s)	101, 104, 107, 197, 238, 318, 350, 679
BmcAI	AGTACT	2 cut(s)	934, 991
Bme1390I	CCNGG	3 cut(s)	249, 980, 1047
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	249, 980, 1047
BmrI	ACTGGG	3 cut(s)	235, 464, 747
BmsI	GCATC	2 cut(s)	55, 712
BmuI	ACTGGG	3 cut(s)	235, 464, 747
BpiI	GAAGAC	1 cut(s)	1043
BpmI	CTGGAG	1 cut(s)	848
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	603
BsaJI	CCNNGG	5 cut(s)	47, 171, 248, 894, 978
Bse1I	ACTGG	7 cut(s)	116, 241, 284, 461, 470, 742, 831
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	249, 980, 1047
BseCI	ATCGAT	1 cut(s)	603
BseDI	CCNNGG	5 cut(s)	47, 171, 248, 894, 978
BseGI	GGATG	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	7 cut(s)	116, 241, 284, 461, 470, 742, 831
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	5 cut(s)	111, 207, 248, 328, 689
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	603
BsiHKAI	GWGCWC	2 cut(s)	13, 650
BslFI	GGGAC	2 cut(s)	452, 940
BsmAI	GTCTC	2 cut(s)	893, 960
BsmBI	CGTCTC	1 cut(s)	893
BsmFI	GGGAC	2 cut(s)	452, 940
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	3 cut(s)	13, 650, 774
Bsp143I	GATC	5 cut(s)	383, 511, 628, 778, 802
BspACI	CCGC	4 cut(s)	102, 105, 349, 354
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	638
BspDI	ATCGAT	1 cut(s)	603
BspMAI	CTGCAG	3 cut(s)	197, 925, 946
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	7 cut(s)	116, 241, 284, 461, 470, 742, 831
BssECI	CCNNGG	5 cut(s)	47, 171, 248, 894, 978
BssMI	GATC	5 cut(s)	383, 511, 628, 778, 802
BssT1I	CCWWGG	2 cut(s)	47, 171
Bst2UI	CCWGG	3 cut(s)	249, 980, 1047
Bst4CI	ACNGT	5 cut(s)	719, 734, 798, 1039, 1060
BstC8I	GCNNGC	3 cut(s)	314, 358, 1006
BstDEI	CTNAG	1 cut(s)	625
BstDSI	CCRYGG	1 cut(s)	894
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	386, 514, 631, 781, 805
BstMAI	GTCTC	2 cut(s)	893, 960
BstMBI	GATC	5 cut(s)	383, 511, 628, 778, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 318, 357
BstNI	CCWGG	3 cut(s)	249, 980, 1047
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	247, 978, 1045
BstSFI	CTRYAG	4 cut(s)	193, 794, 921, 942
BstV1I	GCAGC	5 cut(s)	111, 207, 248, 328, 689
BstV2I	GAAGAC	1 cut(s)	1043
Bsu15I	ATCGAT	1 cut(s)	603
BsuRI	GGCC	1 cut(s)	45
BsuTUI	ATCGAT	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	1 cut(s)	620
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	3 cut(s)	477, 715, 918
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	314, 358, 1006
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	603
CsiI	ACCWGGT	1 cut(s)	1045
Csp6I	GTAC	6 cut(s)	595, 669, 735, 933, 990, 1040
CviAII	CATG	4 cut(s)	85, 205, 563, 760
CviQI	GTAC	6 cut(s)	595, 669, 735, 933, 990, 1040
DdeI	CTNAG	1 cut(s)	625
DpnI	GATC	5 cut(s)	385, 513, 630, 780, 804
DpnII	GATC	5 cut(s)	383, 511, 628, 778, 802
DraIII	CACNNNGTG	1 cut(s)	719
Ecl136II	GAGCTC	2 cut(s)	11, 648
Eco130I	CCWWGG	2 cut(s)	47, 171
Eco24I	GRGCYC	3 cut(s)	13, 650, 774
Eco53kI	GAGCTC	2 cut(s)	11, 648
Eco57I	CTGAAG	2 cut(s)	314, 657
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	2 cut(s)	11, 648
EcoO109I	RGGNCCY	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	247, 978, 1045
EcoT14I	CCWWGG	2 cut(s)	47, 171
EcoT38I	GRGCYC	3 cut(s)	13, 650, 774
ErhI	CCWWGG	2 cut(s)	47, 171
Esp3I	CGTCTC	1 cut(s)	893
FaeI	CATG	4 cut(s)	88, 208, 566, 763
FaqI	GGGAC	2 cut(s)	452, 940
FatI	CATG	4 cut(s)	84, 204, 562, 759
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	1073
Fnu4HI	GCNGC	8 cut(s)	100, 103, 106, 196, 237, 317, 349, 678
FokI	GGATG	1 cut(s)	607
FriOI	GRGCYC	3 cut(s)	13, 650, 774
Fsp4HI	GCNGC	8 cut(s)	100, 103, 106, 196, 237, 317, 349, 678
FspBI	CTAG	3 cut(s)	576, 726, 930
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	8 cut(s)	100, 103, 106, 196, 237, 317, 349, 678
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	848
HaeIII	GGCC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	88, 208, 566, 763
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	2 cut(s)	615, 1074
HindII	GTYRAC	2 cut(s)	615, 1074
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	2 cut(s)	566, 1070
HphI	GGTGA	4 cut(s)	45, 158, 803, 845
Hpy166II	GTNNAC	4 cut(s)	615, 835, 1025, 1074
Hpy188I	TCNGA	5 cut(s)	388, 571, 628, 645, 783
Hpy188III	TCNNGA	2 cut(s)	37, 140
Hpy8I	GTNNAC	4 cut(s)	615, 835, 1025, 1074
HpyCH4III	ACNGT	5 cut(s)	719, 734, 798, 1039, 1060
HpyCH4IV	ACGT	2 cut(s)	33, 902
HpyCH4V	TGCA	7 cut(s)	195, 236, 398, 923, 944, 1004, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 318, 357
HpyF3I	CTNAG	1 cut(s)	625
HpySE526I	ACGT	2 cut(s)	33, 902
Hsp92II	CATG	4 cut(s)	88, 208, 566, 763
HspAI	GCGC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	383, 511, 628, 778, 802
LmnI	GCTCC	3 cut(s)	16, 142, 653
Lsp1109I	GCAGC	5 cut(s)	111, 207, 248, 328, 689
LweI	GCATC	2 cut(s)	55, 712
MabI	ACCWGGT	1 cut(s)	1045
MaeI	CTAG	3 cut(s)	576, 726, 930
MaeII	ACGT	2 cut(s)	33, 902
MaeIII	GTNAC	5 cut(s)	20, 51, 243, 728, 1033
MalI	GATC	5 cut(s)	385, 513, 630, 780, 804
MboI	GATC	5 cut(s)	383, 511, 628, 778, 802
MboII	GAAGA	9 cut(s)	71, 74, 142, 188, 191, 307, 564, 800, 1043
MfeI	CAATTG	2 cut(s)	664, 866
MhlI	GDGCHC	3 cut(s)	13, 650, 774
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	1 cut(s)	779
MnlI	CCTC	8 cut(s)	83, 174, 209, 507, 542, 628, 634, 823
MroXI	GAANNNNTTC	1 cut(s)	556
MseI	TTAA	5 cut(s)	270, 363, 408, 525, 654
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	2 cut(s)	102, 1020
MspR9I	CCNGG	3 cut(s)	249, 980, 1047
MunI	CAATTG	2 cut(s)	664, 866
MvaI	CCWGG	3 cut(s)	249, 980, 1047
MwoI	GCNNNNNNNGC	3 cut(s)	105, 318, 357
NdeII	GATC	5 cut(s)	383, 511, 628, 778, 802
NlaIII	CATG	4 cut(s)	88, 208, 566, 763
NmuCI	GTSAC	3 cut(s)	20, 51, 1033
PaqCI	CACCTGC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	8 cut(s)	101, 104, 107, 197, 238, 318, 350, 679
PleI	GAGTC	1 cut(s)	1078
PpsI	GAGTC	1 cut(s)	1078
PshBI	ATTAAT	2 cut(s)	408, 654
Psp124BI	GAGCTC	2 cut(s)	13, 650
Psp6I	CCWGG	3 cut(s)	247, 978, 1045
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	3 cut(s)	247, 978, 1045
PspPI	GGNCC	1 cut(s)	44
PsrI	GAACNNNNNNTAC	2 cut(s)	727, 759
PstI	CTGCAG	3 cut(s)	197, 925, 946
PvuII	CAGCTG	1 cut(s)	1020
RsaI	GTAC	6 cut(s)	596, 670, 736, 934, 991, 1041
RsaNI	GTAC	6 cut(s)	595, 669, 735, 933, 990, 1040
RseI	CAYNNNNRTG	1 cut(s)	720
SacI	GAGCTC	2 cut(s)	13, 650
SalI	GTCGAC	1 cut(s)	1072
SaqAI	TTAA	5 cut(s)	270, 363, 408, 525, 654
SatI	GCNGC	8 cut(s)	100, 103, 106, 196, 237, 317, 349, 678
Sau3AI	GATC	5 cut(s)	383, 511, 628, 778, 802
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	2 cut(s)	934, 991
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	3 cut(s)	249, 980, 1047
SduI	GDGCHC	3 cut(s)	13, 650, 774
SexAI	ACCWGGT	1 cut(s)	1045
SfaNI	GCATC	2 cut(s)	55, 712
SfcI	CTRYAG	4 cut(s)	193, 794, 921, 942
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	929
SsiI	CCGC	4 cut(s)	102, 105, 349, 354
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	3 cut(s)	576, 726, 930
SstI	GAGCTC	2 cut(s)	13, 650
StyD4I	CCNGG	3 cut(s)	247, 978, 1045
StyI	CCWWGG	2 cut(s)	47, 171
TaaI	ACNGT	5 cut(s)	719, 734, 798, 1039, 1060
TaiI	ACGT	2 cut(s)	36, 905
TaqI	TCGA	2 cut(s)	603, 1073
TatI	WGTACW	3 cut(s)	668, 932, 989
TauI	GCSGC	3 cut(s)	105, 108, 351
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	5 cut(s)	270, 363, 408, 525, 654
Tru9I	TTAA	5 cut(s)	270, 363, 408, 525, 654
TscAI	CASTG	3 cut(s)	477, 722, 925
TseFI	GTSAC	3 cut(s)	20, 51, 1033
TseI	GCWGC	5 cut(s)	99, 195, 236, 316, 677
Tsp45I	GTSAC	3 cut(s)	20, 51, 1033
TspDTI	ATGAA	3 cut(s)	389, 1026, 1043
TspGWI	ACGGA	2 cut(s)	272, 911
TspRI	CASTG	3 cut(s)	477, 722, 925
VspI	ATTAAT	2 cut(s)	408, 654
XapI	RAATTY	3 cut(s)	157, 400, 973
XmiI	GTMKAC	1 cut(s)	1073
XmnI	GAANNNNTTC	1 cut(s)	556
XspI	CTAG	3 cut(s)	576, 726, 930
ZrmI	AGTACT	2 cut(s)	934, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.