Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003649

Physical Location & Seq

Genomic Coordinates Reverse (-)

10825948 .. 10827902

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18500.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGGAGAGCTCCTTGCTGTGACAAAACCAAGGTCAAGAAAGGCCCATGGTCACCTGAAGAAGATGCCAAACTCAAGTCTTACATTGACAAGCATGGCACTGGTGGTAACTGGATTGCCTTGCCGCAGAAGATAGGTCTTAAAAGATGCGGCAAGAGCTGTCGGCTGAGATGGTTGAATTATCTCCGGCCCAATATCAAGCACGGTGGGTTCTCTGAGGAAGAAGATAACATCATTTGCAGCCTCTATATCAATATTGGAAGCAGGTGGTCTATCATTGCAGCCCAATTACCAGGGCGAACTGACAATGATATTAAGAATTACTGGAACACAAGGCTGAAGAAGAAGCTTTTGGGTAAGCAACGCAAAGAACATCAAGCACAGAATCGTAGAGCTGCCGCCAGCCTGAAGCAAGAGATCAAGAGATCAAGTACTACTACAACAAACTTTCATCTTCCTCCTGATGGCTTTGTGAATAACCAAGTAAACCCTTACTGGGCACCAGAGCTTCCTGTATTGCCAGTGATGAGTTATCAAACCCATGACGCTCAAGTACTTGATGACCACCAGGCATCCATTAAGAACATGCTGATCAAACTTGGAGGAAGATTTTCTGACACCACAAGTTCTATGTATCCACCTATTGATCACATTTCCTCAACCTCATCAGATCAGTTCTATCAGAACTCCAGTATCGATCATTTGCTTACTACTTGTTCACCAGTAGCCAACACCAACTATGCTCAATTGGGTCCAAGTCCAAGTCCGACCATGTTTCATGGGGTTGATCATCAGAGTGATCTAGAGGCGGAGCTAAGCGAATTGGTTTACGGCAACAGCCAATTACCTCATCAACAATATGATGGTTTAGCTGGCTTTTATCAAATGGAGACTTTGAACAATGGTAGCACTGGAGGGACTACTAGTACTTCTGCAGAGAGTGAAATTAGTTGGGGAGACATAAACTCCCTGGTTTACAGTACAACAACTCCGATGGTTTCTGACTACGAAAATAGTTGCCAACAAGTCGTGCGGCCATCAGATTCAGCTTTTGCCGAGTCCAACTATTTTGCCATGAAATATCAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

364

Amino Acids

40.64

Weight (kDa)

7.63

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	7 - 30	5.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49690 AT5G65790
fragaria_vesca	FvH4_1g18500 FvH4_1g18500 FvH4_2g32440
malus_domestica	MD02G1191000.v1.1 MD08G1076200.v1.1 MD15G1063300.v1.1 MD15G1302300.v1.1
prunus_persica	Prupe.1G417400_v2.0.a1 Prupe.6G214300_v2.0.a1
pyrus_communis	pycom02g15540 pycom08g06310 pycom15g06010 pycom15g26540
rosa_chinensis	RchiOBHm_Chr2g0109131 RchiOBHm_Chr6g0310231
rosa_laevigata	RLG00000010497 RLG00000017715
rosa_multiflora	Rmu_sc0000186.1_g000014 Rmu_sc0002348.1_g000027
rosa_roxburghii	Rroxscaffold_2G00134480 Rroxscaffold_7G00158720
rosa_rugosa	Rorug02G0157300 Rorug06G0378300 Rorug06G0378400
rosa_samantha	Rh2AG209400 Rh2BG219800 Rh2CG211900 Rh2DG215500 Rh6AG492500 Rh6BG502200 Rh6CG507100 Rh6DG493300
rosa_wichuraiana	Rw6G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	499
AciI	CCGC	5 cut(s)	125, 150, 399, 809, 1033
AclI	AACGTT	1 cut(s)	1087
AcoI	YGGCCR	1 cut(s)	1034
AcuI	CTGAAG	3 cut(s)	78, 359, 428
AfaI	GTAC	4 cut(s)	433, 555, 928, 982
AfiI	CCNNNNNNNGG	2 cut(s)	464, 496
AgsI	TTSAA	2 cut(s)	178, 898
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	3 cut(s)	292, 567, 969
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	8 cut(s)	11, 159, 349, 395, 508, 814, 872, 1049
AluI	AGCT	8 cut(s)	11, 159, 349, 395, 508, 814, 872, 1049
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	884, 951
AoxI	GGCC	3 cut(s)	43, 188, 1034
ApeKI	GCWGC	3 cut(s)	240, 281, 395
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
Asp700I	GAANNNNTTC	1 cut(s)	610
AspS9I	GGNCC	3 cut(s)	44, 189, 752
AsuHPI	GGTGA	2 cut(s)	45, 711
AvaII	GGWCC	1 cut(s)	752
BaeGI	GKGCMC	1 cut(s)	502
BaeI	ACNNNNGTAYC	2 cut(s)	676, 709
BanI	GGYRCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	252, 293, 382
BccI	CCATC	5 cut(s)	165, 458, 857, 988, 1045
BceAI	ACGGC	1 cut(s)	847
BciT130I	CCWGG	3 cut(s)	294, 569, 971
BciVI	GTATCC	1 cut(s)	645
BclI	TGATCA	3 cut(s)	591, 646, 787
BcoDI	GTCTC	2 cut(s)	884, 951
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	2 cut(s)	803, 924
BfmI	CTRYAG	1 cut(s)	933
BfuAI	ACCTGC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	7 cut(s)	125, 151, 241, 282, 396, 399, 1034
BlpI	GCTNAGC	1 cut(s)	815
BlsI	GCNGC	7 cut(s)	126, 152, 242, 283, 397, 400, 1035
BmcAI	AGTACT	3 cut(s)	433, 555, 928
Bme1390I	CCNGG	3 cut(s)	294, 569, 971
Bme18I	GGWCC	1 cut(s)	752
BmgT120I	GGNCC	3 cut(s)	44, 189, 752
BmiI	GGNNCC	2 cut(s)	501, 753
BmrFI	CCNGG	3 cut(s)	294, 569, 971
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	3 cut(s)	55, 137, 581
BmuI	ACTGGG	1 cut(s)	505
BpmI	CTGGAG	2 cut(s)	673, 933
Bpu1102I	GCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	2 cut(s)	59, 534
Bsa29I	ATCGAT	1 cut(s)	696
BsaJI	CCNNGG	4 cut(s)	30, 47, 293, 969
BsaXI	ACNNNNNCTCC	4 cut(s)	950, 973, 980, 1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 496
Bse1I	ACTGG	8 cut(s)	106, 116, 329, 500, 521, 690, 722, 916
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	3 cut(s)	294, 569, 971
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	4 cut(s)	30, 47, 293, 969
BseGI	GGATG	1 cut(s)	572
BseLI	CCNNNNNNNGG	2 cut(s)	464, 496
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	158, 207
BseNI	ACTGG	8 cut(s)	106, 116, 329, 500, 521, 690, 722, 916
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	3 cut(s)	252, 293, 382
BshFI	GGCC	3 cut(s)	45, 190, 1036
BshNI	GGYRCC	1 cut(s)	499
BshVI	ATCGAT	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	931
BslI	CCNNNNNNNGG	2 cut(s)	464, 496
BsmAI	GTCTC	2 cut(s)	884, 951
BsmFI	GGGAC	1 cut(s)	931
BsnI	GGCC	3 cut(s)	45, 190, 1036
Bsp1286I	GDGCHC	2 cut(s)	13, 502
Bsp143I	GATC	8 cut(s)	417, 425, 591, 646, 670, 697, 787, 799
Bsp1720I	GCTNAGC	1 cut(s)	815
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	125, 150, 399, 809, 1033
BspANI	GGCC	3 cut(s)	45, 190, 1036
BspCNI	CTCAG	2 cut(s)	159, 208
BspDI	ATCGAT	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	501, 753
BspMAI	CTGCAG	1 cut(s)	937
BspMI	ACCTGC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	8 cut(s)	106, 116, 329, 500, 521, 690, 722, 916
BssECI	CCNNGG	4 cut(s)	30, 47, 293, 969
BssMI	GATC	8 cut(s)	417, 425, 591, 646, 670, 697, 787, 799
BssT1I	CCWWGG	2 cut(s)	30, 47
Bst2UI	CCWGG	3 cut(s)	294, 569, 971
Bst4CI	ACNGT	2 cut(s)	206, 980
BstC8I	GCNNGC	2 cut(s)	403, 874
BstDEI	CTNAG	3 cut(s)	167, 216, 815
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	572
BstKTI	GATC	8 cut(s)	420, 428, 594, 649, 673, 700, 790, 802
BstMAI	GTCTC	2 cut(s)	884, 951
BstMBI	GATC	8 cut(s)	417, 425, 591, 646, 670, 697, 787, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	3 cut(s)	294, 569, 971
BstNSI	RCATGY	1 cut(s)	589
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	292, 567, 969
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	252, 293, 382
Bsu15I	ATCGAT	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	45, 190, 1036
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	572
BtsIMutI	CAGTG	3 cut(s)	99, 528, 909
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	403, 874
Cfr13I	GGNCC	3 cut(s)	44, 189, 752
ClaI	ATCGAT	1 cut(s)	696
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	4 cut(s)	432, 554, 927, 981
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	7 cut(s)	48, 95, 542, 586, 772, 779, 1075
CviQI	GTAC	4 cut(s)	432, 554, 927, 981
DdeI	CTNAG	3 cut(s)	167, 216, 815
DpnI	GATC	8 cut(s)	419, 427, 593, 648, 672, 699, 789, 801
DpnII	GATC	8 cut(s)	417, 425, 591, 646, 670, 697, 787, 799
EaeI	YGGCCR	1 cut(s)	1034
EciI	GGCGGA	1 cut(s)	824
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	30, 47
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	752
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	3 cut(s)	78, 359, 428
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	292, 567, 969
EcoT14I	CCWWGG	2 cut(s)	30, 47
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	30, 47
FaeI	CATG	7 cut(s)	51, 98, 545, 589, 775, 782, 1078
FaqI	GGGAC	1 cut(s)	931
FatI	CATG	7 cut(s)	47, 94, 541, 585, 771, 778, 1074
FbaI	TGATCA	3 cut(s)	591, 646, 787
Fnu4HI	GCNGC	7 cut(s)	125, 151, 241, 282, 396, 399, 1034
FokI	GGATG	1 cut(s)	559
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	7 cut(s)	125, 151, 241, 282, 396, 399, 1034
FspBI	CTAG	2 cut(s)	803, 924
GluI	GCNGC	7 cut(s)	125, 151, 241, 282, 396, 399, 1034
GsuI	CTGGAG	2 cut(s)	673, 933
HaeIII	GGCC	3 cut(s)	45, 190, 1036
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	1 cut(s)	554
Hin1II	CATG	7 cut(s)	51, 98, 545, 589, 775, 782, 1078
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	385, 1043, 1058
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	45, 711
Hpy166II	GTNNAC	4 cut(s)	487, 719, 829, 976
Hpy188I	TCNGA	9 cut(s)	217, 616, 670, 684, 768, 795, 993, 1003, 1042
Hpy188III	TCNNGA	4 cut(s)	37, 421, 461, 803
Hpy8I	GTNNAC	4 cut(s)	487, 719, 829, 976
HpyCH4III	ACNGT	2 cut(s)	206, 980
HpyCH4IV	ACGT	1 cut(s)	1087
HpyCH4V	TGCA	3 cut(s)	240, 281, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	3 cut(s)	167, 216, 815
HpySE526I	ACGT	1 cut(s)	1087
Hsp92II	CATG	7 cut(s)	51, 98, 545, 589, 775, 782, 1078
Ksp22I	TGATCA	3 cut(s)	591, 646, 787
Kzo9I	GATC	8 cut(s)	417, 425, 591, 646, 670, 697, 787, 799
LmnI	GCTCC	2 cut(s)	16, 811
Lsp1109I	GCAGC	3 cut(s)	252, 293, 382
LweI	GCATC	3 cut(s)	55, 137, 581
MaeI	CTAG	2 cut(s)	803, 924
MaeII	ACGT	1 cut(s)	1087
MaeIII	GTNAC	3 cut(s)	20, 51, 107
MalI	GATC	8 cut(s)	419, 427, 593, 648, 672, 699, 789, 801
MboI	GATC	8 cut(s)	417, 425, 591, 646, 670, 697, 787, 799
MboII	GAAGA	9 cut(s)	71, 74, 142, 233, 236, 352, 355, 446, 618
MfeI	CAATTG	1 cut(s)	746
MhlI	GDGCHC	2 cut(s)	13, 502
MluCI	AATT	7 cut(s)	178, 287, 319, 746, 821, 842, 945
MlyI	GAGTC	1 cut(s)	1067
MmeI	TCCRAC	2 cut(s)	791, 1086
MnlI	CCTC	9 cut(s)	211, 254, 468, 596, 667, 673, 799, 858, 908
MroXI	GAANNNNTTC	1 cut(s)	610
MseI	TTAA	4 cut(s)	141, 315, 579, 1090
MslI	CAYNNNNRTG	1 cut(s)	795
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	3 cut(s)	294, 569, 971
MunI	CAATTG	1 cut(s)	746
MvaI	CCWGG	3 cut(s)	294, 569, 971
MwoI	GCNNNNNNNGC	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	8 cut(s)	417, 425, 591, 646, 670, 697, 787, 799
NlaIII	CATG	7 cut(s)	51, 98, 545, 589, 775, 782, 1078
NlaIV	GGNNCC	2 cut(s)	501, 753
NmeAIII	GCCGAG	1 cut(s)	1081
NmuCI	GTSAC	2 cut(s)	20, 51
NspI	RCATGY	1 cut(s)	589
PaqCI	CACCTGC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	385, 1043
PkrI	GCNGC	7 cut(s)	126, 152, 242, 283, 397, 400, 1035
PleI	GAGTC	1 cut(s)	1066
PpsI	GAGTC	1 cut(s)	1066
Psp124BI	GAGCTC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	1087
Psp6I	CCWGG	3 cut(s)	292, 567, 969
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	292, 567, 969
PspN4I	GGNNCC	2 cut(s)	501, 753
PspPI	GGNCC	3 cut(s)	44, 189, 752
PstI	CTGCAG	1 cut(s)	937
RsaI	GTAC	4 cut(s)	433, 555, 928, 982
RsaNI	GTAC	4 cut(s)	432, 554, 927, 981
RseI	CAYNNNNRTG	1 cut(s)	795
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	4 cut(s)	141, 315, 579, 1090
SatI	GCNGC	7 cut(s)	125, 151, 241, 282, 396, 399, 1034
Sau3AI	GATC	8 cut(s)	417, 425, 591, 646, 670, 697, 787, 799
Sau96I	GGNCC	3 cut(s)	44, 189, 752
ScaI	AGTACT	3 cut(s)	433, 555, 928
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	3 cut(s)	294, 569, 971
SduI	GDGCHC	2 cut(s)	13, 502
SfaNI	GCATC	3 cut(s)	55, 137, 581
SfcI	CTRYAG	1 cut(s)	933
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	2 cut(s)	74, 549
SmoI	CTYRAG	2 cut(s)	74, 549
SpeI	ACTAGT	1 cut(s)	923
Sse9I	AATT	7 cut(s)	178, 287, 319, 746, 821, 842, 945
SsiI	CCGC	5 cut(s)	125, 150, 399, 809, 1033
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	2 cut(s)	803, 924
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	3 cut(s)	292, 567, 969
StyI	CCWWGG	2 cut(s)	30, 47
TaaI	ACNGT	2 cut(s)	206, 980
TaiI	ACGT	1 cut(s)	1090
TaqI	TCGA	1 cut(s)	696
TasI	AATT	7 cut(s)	178, 287, 319, 746, 821, 842, 945
TatI	WGTACW	4 cut(s)	431, 553, 926, 980
TauI	GCSGC	4 cut(s)	127, 153, 401, 1036
TfiI	GAWTC	2 cut(s)	385, 1043
Tru1I	TTAA	4 cut(s)	141, 315, 579, 1090
Tru9I	TTAA	4 cut(s)	141, 315, 579, 1090
TscAI	CASTG	3 cut(s)	106, 528, 916
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	3 cut(s)	240, 281, 395
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	3 cut(s)	440, 767, 1091
TspRI	CASTG	3 cut(s)	106, 528, 916
VpaK11BI	GGWCC	1 cut(s)	752
XbaI	TCTAGA	1 cut(s)	802
XceI	RCATGY	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	610
XspI	CTAG	2 cut(s)	803, 924
ZrmI	AGTACT	3 cut(s)	433, 555, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.