pycom08g06310
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
4873576 .. 4875129
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06310.1

Sequence Viewer

Length: 1104 bp
ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTGAAGAGAGGTCCATGGTCACCTGAAGAAGATGCCAAGCTCAAGTCTTACATCGAGCAACATGGCACCGGCGGTAACTGGATCGCTTTGCCGCAAAAGATCGCCCAAATGCCAGGAAGAACTGACAATGATATAAAGAACTACTGGAACACAAGGCTTAAGAAAAAACTTCTTGGTAGGCAGCGCAAAGAACATCAGCTGGCTCGTAAATCAGGCCTAGTTAATCAAGACACCATCAAAAGATCAGGCGGTGTTGGTGGAAACAGTACTAACTCCCATTCTGCCGTTCCGGCCACCGACGATCAAAACCCTTACTGGCCTGAGCTTCCAGTGCATGCAGTACCCACAGTACTTCCACAACAACAACAGCAGCCTTGTTTTAATGATCATGCTTCTCTCAGAAAGTTGCTCATCAAGCTTGGAGGGAGGTTTGGTTCAGATGTTAATCATAATCATGAGACTAATCAAGTTATCCAAGGTAGGCCCGCCAATATTCAACCAACCTATCAAGTTCTTGACGATGATAATTACAGTCCATACGCCGCTGCTGCTGCTGCTACTCAGCAAATGGATGAGCACTATTCTGGTAAGAACATGCAAAGTCTCTTAATTCCTCGATGTGGGATCCATGCTCTCAACGATTCTTCTCCTTCCTTAAGCAATGATGTTATCAGCCCTCATCAATTTGCACAAACACATTACATAGTGAATACAGATAATATTGATGGACCTGGTAATGGTATAATGAACAACATGTTTCAAGGGCAAGGTGGTAATTATGAGACTGATCAGCTGAAGGAGATGGTGGTGTATAACAACAATGACAACCAACACAGATTTGATGGGTTGGAGTTCTTCTGTGGGGAAGAGATGATGGTTAATAATAGAATTACCAGTAGTTATGGAGAAAGTATTGGGTGGGGTGAGATGCTGGGATGTCCTCCTGTGGCCTCCTCCTCAGACGACTATCATGACAGCATGGACCGATTGATCATGCCGGCCACACCCGGCCAAGAATGTGGTTTCGCCAACGACCAGTTGATGAGTGGTTACCCTGGGGAGGCATTATAA

Protein Analysis

368

Amino Acids

40.62

Weight (kDa)

5.69

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 63 1.2e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1102
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 5 cut(s) 105, 125, 282, 519, 576
AclWI GGATC 3 cut(s) 122, 652, 665
AcoI YGGCCR 3 cut(s) 324, 1032, 1042
AcuI CTGAAG 2 cut(s) 78, 848
AfaI GTAC 3 cut(s) 301, 375, 384
AfiI CCNNNNNNNGG 3 cut(s) 653, 770, 1093
AflII CTTAAG 2 cut(s) 191, 688
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 2 cut(s) 530, 794
AjnI CCWGG 3 cut(s) 145, 763, 1087
AloI GAACNNNNNNTCC 2 cut(s) 451, 483
AluBI AGCT 6 cut(s) 11, 73, 232, 358, 451, 826
AluI AGCT 6 cut(s) 11, 73, 232, 358, 451, 826
Alw21I GWGCWC 2 cut(s) 13, 612
Alw26I GTCTC 3 cut(s) 485, 641, 809
AlwI GGATC 3 cut(s) 122, 652, 665
AoxI GGCC 7 cut(s) 247, 324, 350, 515, 981, 1032, 1042
ApeKI GCWGC 6 cut(s) 214, 403, 578, 581, 584, 587
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 4 cut(s) 44, 516, 761, 1015
AsuC2I CCSGG 1 cut(s) 1041
AsuHPI GGTGA 2 cut(s) 45, 968
AvaII GGWCC 3 cut(s) 44, 761, 1015
BamHI GGATCC 1 cut(s) 657
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 2 cut(s) 13, 612
BbvI GCAGC 6 cut(s) 226, 415, 565, 568, 571, 574
BccI CCATC 5 cut(s) 275, 752, 829, 869, 901
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 3 cut(s) 147, 765, 1089
BclI TGATCA 3 cut(s) 418, 820, 1023
BcnI CCSGG 1 cut(s) 1041
BcoDI GTCTC 3 cut(s) 485, 641, 809
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 2 cut(s) 191, 688
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 8 cut(s) 125, 215, 404, 576, 579, 582, 585, 588
BlsI GCNGC 8 cut(s) 126, 216, 405, 577, 580, 583, 586, 589
BmcAI AGTACT 2 cut(s) 301, 384
Bme1390I CCNGG 4 cut(s) 147, 765, 1041, 1089
Bme18I GGWCC 3 cut(s) 44, 761, 1015
BmgT120I GGNCC 4 cut(s) 44, 516, 761, 1015
BmiI GGNNCC 2 cut(s) 100, 659
BmrFI CCNGG 4 cut(s) 147, 765, 1041, 1089
BmsI GCATC 2 cut(s) 55, 951
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 1041
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 4 cut(s) 47, 508, 1087, 1088
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 3 cut(s) 653, 770, 1093
Bse118I RCCGGY 2 cut(s) 101, 1030
Bse1I ACTGG 6 cut(s) 116, 182, 353, 362, 927, 1069
Bse3DI GCAATG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 3 cut(s) 147, 765, 1089
BseDI CCNNGG 4 cut(s) 47, 508, 1087, 1088
BseGI GGATG 2 cut(s) 610, 974
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 3 cut(s) 653, 770, 1093
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 4 cut(s) 345, 445, 608, 1005
BseNI ACTGG 6 cut(s) 116, 182, 353, 362, 927, 1069
BseRI GAGGAG 2 cut(s) 976, 979
BseXI GCAGC 6 cut(s) 226, 415, 565, 568, 571, 574
BseYI CCCAGC 1 cut(s) 964
BshFI GGCC 7 cut(s) 249, 326, 352, 517, 983, 1034, 1044
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 13, 612
BsiSI CCGG 4 cut(s) 102, 323, 1031, 1041
BslI CCNNNNNNNGG 3 cut(s) 653, 770, 1093
BsmAI GTCTC 3 cut(s) 485, 641, 809
BsnI GGCC 7 cut(s) 249, 326, 352, 517, 983, 1034, 1044
Bsp1286I GDGCHC 2 cut(s) 13, 612
Bsp143I GATC 8 cut(s) 114, 132, 275, 334, 418, 657, 820, 1023
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 5 cut(s) 105, 125, 282, 519, 576
BspANI GGCC 7 cut(s) 249, 326, 352, 517, 983, 1034, 1044
BspCNI CTCAG 4 cut(s) 346, 444, 607, 1004
BspHI TCATGA 2 cut(s) 487, 1003
BspLI GGNNCC 2 cut(s) 100, 659
BspPI GGATC 3 cut(s) 122, 652, 665
BspT107I GGYRCC 1 cut(s) 98
BspTI CTTAAG 2 cut(s) 191, 688
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 2 cut(s) 101, 1030
BsrI ACTGG 6 cut(s) 116, 182, 353, 362, 927, 1069
BssAI RCCGGY 2 cut(s) 101, 1030
BssECI CCNNGG 4 cut(s) 47, 508, 1087, 1088
BssMI GATC 8 cut(s) 114, 132, 275, 334, 418, 657, 820, 1023
BssT1I CCWWGG 2 cut(s) 47, 508
Bst2UI CCWGG 3 cut(s) 147, 765, 1089
Bst4CI ACNGT 3 cut(s) 299, 382, 566
Bst6I CTCTTC 2 cut(s) 32, 894
BstAFI CTTAAG 2 cut(s) 191, 688
BstC8I GCNNGC 4 cut(s) 234, 369, 519, 1032
BstDEI CTNAG 4 cut(s) 354, 431, 594, 991
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 2 cut(s) 51, 1082
BstF5I GGATG 2 cut(s) 610, 974
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 8 cut(s) 117, 135, 278, 337, 421, 660, 823, 1026
BstMAI GTCTC 3 cut(s) 485, 641, 809
BstMBI GATC 8 cut(s) 114, 132, 275, 334, 418, 657, 820, 1023
BstMWI GCNNNNNNNGC 6 cut(s) 323, 364, 448, 581, 584, 587
BstNI CCWGG 3 cut(s) 147, 765, 1089
BstNSI RCATGY 3 cut(s) 371, 631, 790
BstPI GGTNACC 2 cut(s) 51, 1082
BstSCI CCNGG 4 cut(s) 145, 763, 1039, 1087
BstV1I GCAGC 6 cut(s) 226, 415, 565, 568, 571, 574
BstX2I RGATCY 1 cut(s) 657
BstXI CCANNNNNNTGG 1 cut(s) 1052
BstYI RGATCY 1 cut(s) 657
BsuRI GGCC 7 cut(s) 249, 326, 352, 517, 983, 1034, 1044
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 610, 974
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 4 cut(s) 234, 369, 519, 1032
CciI TCATGA 2 cut(s) 487, 1003
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 2 cut(s) 101, 1030
Cfr13I GGNCC 4 cut(s) 44, 516, 761, 1015
CsiI ACCWGGT 1 cut(s) 763
Csp6I GTAC 3 cut(s) 300, 374, 383
CviQI GTAC 3 cut(s) 300, 374, 383
DdeI CTNAG 4 cut(s) 354, 431, 594, 991
DpnI GATC 8 cut(s) 116, 134, 277, 336, 420, 659, 822, 1025
DpnII GATC 8 cut(s) 114, 132, 275, 334, 418, 657, 820, 1023
EaeI YGGCCR 3 cut(s) 324, 1032, 1042
Eam1104I CTCTTC 2 cut(s) 32, 894
EarI CTCTTC 2 cut(s) 32, 894
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 47, 508
Eco147I AGGCCT 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 3 cut(s) 44, 761, 1015
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 78, 848
Eco91I GGTNACC 2 cut(s) 51, 1082
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 2 cut(s) 51, 1082
EcoRII CCWGG 3 cut(s) 145, 763, 1087
EcoT14I CCWWGG 2 cut(s) 47, 508
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 47, 508
FauI CCCGC 1 cut(s) 526
FbaI TGATCA 3 cut(s) 418, 820, 1023
Fnu4HI GCNGC 8 cut(s) 125, 215, 404, 576, 579, 582, 585, 588
FokI GGATG 2 cut(s) 617, 981
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 8 cut(s) 125, 215, 404, 576, 579, 582, 585, 588
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 218
GluI GCNGC 8 cut(s) 125, 215, 404, 576, 579, 582, 585, 588
GsaI CCCAGC 1 cut(s) 968
HaeIII GGCC 7 cut(s) 249, 326, 352, 517, 983, 1034, 1044
HapII CCGG 4 cut(s) 102, 323, 1031, 1041
HhaI GCGC 1 cut(s) 219
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 1 cut(s) 674
HpaII CCGG 4 cut(s) 102, 323, 1031, 1041
HphI GGTGA 2 cut(s) 45, 968
Hpy188I TCNGA 3 cut(s) 434, 472, 994
Hpy188III TCNNGA 4 cut(s) 260, 488, 548, 1004
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 693, 823
HpyCH4III ACNGT 3 cut(s) 299, 382, 566
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 367, 371, 631, 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 323, 364, 448, 581, 584, 587
HpyF3I CTNAG 4 cut(s) 354, 431, 594, 991
HpySE526I ACGT 1 cut(s) 33
HspAI GCGC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 1030
KroNI GCCGGC 1 cut(s) 1032
Ksp22I TGATCA 3 cut(s) 418, 820, 1023
Kzo9I GATC 8 cut(s) 114, 132, 275, 334, 418, 657, 820, 1023
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 6 cut(s) 226, 415, 565, 568, 571, 574
LweI GCATC 2 cut(s) 55, 951
MabI ACCWGGT 1 cut(s) 763
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 20, 51, 107, 1082
MalI GATC 8 cut(s) 116, 134, 277, 336, 420, 659, 822, 1025
MboI GATC 8 cut(s) 114, 132, 275, 334, 418, 657, 820, 1023
MboII GAAGA 7 cut(s) 49, 71, 74, 162, 669, 880, 911
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 13, 612
MluCI AATT 5 cut(s) 559, 642, 716, 808, 921
MmeI TCCRAC 1 cut(s) 861
MroNI GCCGGC 1 cut(s) 1030
MseI TTAA 7 cut(s) 192, 255, 414, 477, 641, 689, 912
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 3 cut(s) 232, 578, 826
MspCI CTTAAG 2 cut(s) 191, 688
MspI CCGG 4 cut(s) 102, 323, 1031, 1041
MspR9I CCNGG 4 cut(s) 147, 765, 1041, 1089
MvaI CCWGG 3 cut(s) 147, 765, 1089
MwoI GCNNNNNNNGC 6 cut(s) 323, 364, 448, 581, 584, 587
NaeI GCCGGC 1 cut(s) 1032
NciI CCSGG 1 cut(s) 1041
NcoI CCATGG 1 cut(s) 47
NdeII GATC 8 cut(s) 114, 132, 275, 334, 418, 657, 820, 1023
NgoMIV GCCGGC 1 cut(s) 1030
NlaIV GGNNCC 2 cut(s) 100, 659
NmuCI GTSAC 2 cut(s) 20, 51
NspI RCATGY 3 cut(s) 371, 631, 790
PaeI GCATGC 1 cut(s) 371
PagI TCATGA 2 cut(s) 487, 1003
PasI CCCWGGG 1 cut(s) 1088
PceI AGGCCT 1 cut(s) 249
PciI ACATGT 1 cut(s) 786
PdiI GCCGGC 1 cut(s) 1032
PfeI GAWTC 1 cut(s) 674
PkrI GCNGC 8 cut(s) 126, 216, 405, 577, 580, 583, 586, 589
PscI ACATGT 1 cut(s) 786
PsiI TTATAA 1 cut(s) 1102
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 145, 763, 1087
PspEI GGTNACC 2 cut(s) 51, 1082
PspFI CCCAGC 1 cut(s) 964
PspGI CCWGG 3 cut(s) 145, 763, 1087
PspN4I GGNNCC 2 cut(s) 100, 659
PspPI GGNCC 4 cut(s) 44, 516, 761, 1015
PsuI RGATCY 1 cut(s) 657
PvuII CAGCTG 2 cut(s) 232, 826
RsaI GTAC 3 cut(s) 301, 375, 384
RsaNI GTAC 3 cut(s) 300, 374, 383
RseI CAYNNNNRTG 1 cut(s) 486
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 7 cut(s) 192, 255, 414, 477, 641, 689, 912
SatI GCNGC 8 cut(s) 125, 215, 404, 576, 579, 582, 585, 588
Sau3AI GATC 8 cut(s) 114, 132, 275, 334, 418, 657, 820, 1023
Sau96I GGNCC 4 cut(s) 44, 516, 761, 1015
ScaI AGTACT 2 cut(s) 301, 384
ScrFI CCNGG 4 cut(s) 147, 765, 1041, 1089
SduI GDGCHC 2 cut(s) 13, 612
SexAI ACCWGGT 1 cut(s) 763
SfaNI GCATC 2 cut(s) 55, 951
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 3 cut(s) 44, 761, 1015
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 3 cut(s) 74, 191, 688
SmoI CTYRAG 3 cut(s) 74, 191, 688
SphI GCATGC 1 cut(s) 371
Sse9I AATT 5 cut(s) 559, 642, 716, 808, 921
SseBI AGGCCT 1 cut(s) 249
SsiI CCGC 5 cut(s) 105, 125, 282, 519, 576
SspI AATATT 2 cut(s) 526, 754
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 249
StyD4I CCNGG 4 cut(s) 145, 763, 1039, 1087
StyI CCWWGG 2 cut(s) 47, 508
TaaI ACNGT 3 cut(s) 299, 382, 566
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 87, 649
TaqII GACCGA 1 cut(s) 1032
TasI AATT 5 cut(s) 559, 642, 716, 808, 921
TatI WGTACW 2 cut(s) 299, 382
TauI GCSGC 2 cut(s) 127, 578
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 7 cut(s) 192, 255, 414, 477, 641, 689, 912
Tru9I TTAA 7 cut(s) 192, 255, 414, 477, 641, 689, 912
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 20, 51
TseI GCWGC 6 cut(s) 214, 403, 578, 581, 584, 587
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 1 cut(s) 794
TspRI CASTG 1 cut(s) 369
Vha464I CTTAAG 2 cut(s) 191, 688
VpaK11BI GGWCC 3 cut(s) 44, 761, 1015
XceI RCATGY 3 cut(s) 371, 631, 790
XcmI CCANNNNNNNNNTGG 1 cut(s) 1076
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 2 cut(s) 301, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.