RLG00000017715
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
20371540 .. 20376640
5101 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017715

Sequence Viewer

Length: 1311 bp
ATGATTGATCATCCAAATATGTTTCTAGATGCTCGTAGATCTCAAGTCTCAACATCATTATTTGATTTCTTCGACGACACTTGTCGTCTTCATTCTAGATTTCCAGAAACTAAACCCGGGGTATTGGCCTTCCAAATCCACCGTGAGTGGAATCGGCCTTCTTTGTCGACTGGTGAGTCGCTTCAGAGCAGTGAATCCATCTTGTCACCTTGCCACACGCACCGCTATGACCGGCTGTCCAACTGCAAAATCAAGTATTGGTCTATTGACATTTCTCTATGTAAGGATAACAACGTGATCCATTTACTCCTTCATTTTATAAGTGGAAAGCTATGCAATAATTCCGAGGGACCGAGAAAGGACAACCAAGAAGGTCTTAAAAGATGTGGGAAGAGCTGTCGGCTGAGATGGTTGAATTATCTCCGGCCCAATATCAAGCACGGTGGGTTCTCTGAGGAAGAAGATAACATCATCTGCAGCCTCTATATCAATATTGGAAGCAGGTGGTCTATCATTGCAGCCCAATTACCCGGGCGAACTGATAATGATATTAAGAATTACTGGAACACAAGACTGAAGAAGAAGCTTTTGGGCAAGCAGCGGAAAGAACAACAGGCACAGAATCGTAAAGCCGCCGCCAGCCTAAAGCAAGAGAACAAGAGATCGAGTACTGCAACAAACTATCATCTTCCTCCTGATGATTTTGTGAACCAAGTAAACCCTTACTGGGCACCAGAGCTTCCTGTAGTGCTGCCAGTGATGAGTTATCAAATCCATGATGCTCAAGTACTTGATGACCACCAGGCATCCATTAAGAACATGCTGATCAAACTTGGAGGAAGATTTTCTGACACCACAAATTCTATGTATTCGCCTATTGATCACATTTCCTCTACCTCATCACATCAGTTCTATCAGAACTCCGGTATTGATCATATGCTTGCTTGTTCACCAGCAGCCAACACCAACTATGCTCAATTGGGTCCAAGTCCAAGTCCGACCATGTTTCATGGGGTTGATCATCAGAGTGATCTAGAGGCGGAGCTAAGCGAATTGGTTTTCGGAAACAGCCAGCCTCATAAACAGTATGATGGTTTGGCTGGCTTTTATCAAATGGAGACTTTGAATAATGGTAGCACTGGAGGGACTACTAGTACTTCTGCAGAGAGTGAAATTAGTTGGGGAGACATAAGCTCCCTTGTTTATAGTACAACTACTCCTATGGTTTCTGAGTACGAAAATAGTTGTCAACAAGGCGTGCGGCCATCAGATTCTGCTTTTGCCGAGTCAACCTACTTCGGCATGAAATAG

Protein Analysis

437

Amino Acids

49.19

Weight (kDa)

6.62

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 148 - 191 6e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 150 - 196 1.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AarI CACCTGC 1 cut(s) 492
AasI GACNNNNNNGTC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 730
AccI GTMKAC 1 cut(s) 167
AciI CCGC 6 cut(s) 223, 601, 633, 636, 1040, 1261
AclWI GGATC 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 1262
AcsI RAATTY 1 cut(s) 859
AcuI CTGAAG 2 cut(s) 167, 596
AfaI GTAC 5 cut(s) 670, 789, 1156, 1210, 1235
AfiI CCNNNNNNNGG 1 cut(s) 727
AgsI TTSAA 2 cut(s) 415, 1126
AhdI GACNNNNNGTC 1 cut(s) 235
AhlI ACTAGT 1 cut(s) 1151
AjnI CCWGG 1 cut(s) 801
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 6 cut(s) 331, 396, 586, 739, 1045, 1194
AluI AGCT 6 cut(s) 331, 396, 586, 739, 1045, 1194
Alw26I GTCTC 3 cut(s) 52, 1112, 1179
AlwI GGATC 1 cut(s) 292
AlwNI CAGNNNCTG 1 cut(s) 1274
Ama87I CYCGRG 2 cut(s) 116, 530
AoxI GGCC 4 cut(s) 126, 155, 425, 1262
ApeKI GCWGC 5 cut(s) 477, 518, 598, 751, 956
ApoI RAATTY 1 cut(s) 859
Asp700I GAANNNNTTC 1 cut(s) 844
AspS9I GGNCC 3 cut(s) 350, 426, 983
AsuC2I CCSGG 4 cut(s) 117, 118, 531, 532
AsuHPI GGTGA 3 cut(s) 185, 198, 942
AvaI CYCGRG 2 cut(s) 116, 530
AvaII GGWCC 2 cut(s) 350, 983
BaeGI GKGCMC 1 cut(s) 733
BanI GGYRCC 1 cut(s) 730
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 5 cut(s) 489, 530, 610, 738, 968
BccI CCATC 4 cut(s) 206, 402, 1085, 1273
BciT130I CCWGG 1 cut(s) 803
BclI TGATCA 5 cut(s) 7, 825, 880, 931, 1018
BcnI CCSGG 4 cut(s) 117, 118, 531, 532
BcoDI GTCTC 3 cut(s) 52, 1112, 1179
BcuI ACTAGT 1 cut(s) 1151
BfaI CTAG 4 cut(s) 26, 96, 1034, 1152
BfmI CTRYAG 3 cut(s) 475, 744, 1161
BfuAI ACCTGC 1 cut(s) 492
BglII AGATCT 1 cut(s) 38
BisI GCNGC 8 cut(s) 478, 519, 599, 633, 636, 752, 957, 1262
BlpI GCTNAGC 1 cut(s) 1046
BlsI GCNGC 8 cut(s) 479, 520, 600, 634, 637, 753, 958, 1263
BmcAI AGTACT 3 cut(s) 670, 789, 1156
Bme1390I CCNGG 5 cut(s) 117, 118, 531, 532, 803
Bme18I GGWCC 2 cut(s) 350, 983
BmeRI GACNNNNNGTC 1 cut(s) 235
BmeT110I CYCGRG 2 cut(s) 116, 530
BmgT120I GGNCC 3 cut(s) 350, 426, 983
BmiI GGNNCC 3 cut(s) 351, 732, 984
BmrFI CCNGG 5 cut(s) 117, 118, 531, 532, 803
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 3 cut(s) 19, 769, 815
BmuI ACTGGG 1 cut(s) 736
BoxI GACNNNNGTC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 1161
Bpu1102I GCTNAGC 1 cut(s) 1046
BpuEI CTTGAG 2 cut(s) 27, 768
BpuMI CCSGG 4 cut(s) 117, 118, 531, 532
BsaJI CCNNGG 4 cut(s) 116, 117, 345, 530
BsaWI WCCGGW 1 cut(s) 923
BsaXI ACNNNNNCTCC 4 cut(s) 1178, 1201, 1208, 1231
Bsc4I CCNNNNNNNGG 1 cut(s) 727
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 5 cut(s) 175, 566, 731, 755, 1144
Bse3DI GCAATG 1 cut(s) 513
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 4 cut(s) 116, 117, 345, 530
BseGI GGATG 2 cut(s) 10, 806
BseLI CCNNNNNNNGG 1 cut(s) 727
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 3 cut(s) 395, 444, 1221
BseNI ACTGG 5 cut(s) 175, 566, 731, 755, 1144
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 5 cut(s) 489, 530, 610, 738, 968
BshFI GGCC 4 cut(s) 128, 157, 427, 1264
BshNI GGYRCC 1 cut(s) 730
BsiHKCI CYCGRG 2 cut(s) 116, 530
BsiSI CCGG 5 cut(s) 117, 232, 424, 531, 924
BslFI GGGAC 2 cut(s) 363, 1159
BslI CCNNNNNNNGG 1 cut(s) 727
BsmAI GTCTC 3 cut(s) 52, 1112, 1179
BsmFI GGGAC 2 cut(s) 363, 1159
BsnI GGCC 4 cut(s) 128, 157, 427, 1264
BsoBI CYCGRG 2 cut(s) 116, 530
Bsp1286I GDGCHC 1 cut(s) 733
Bsp143I GATC 9 cut(s) 7, 38, 297, 662, 825, 880, 931, 1018, 1030
Bsp1720I GCTNAGC 1 cut(s) 1046
BspACI CCGC 6 cut(s) 223, 601, 633, 636, 1040, 1261
BspANI GGCC 4 cut(s) 128, 157, 427, 1264
BspCNI CTCAG 3 cut(s) 396, 445, 1222
BspLI GGNNCC 3 cut(s) 351, 732, 984
BspMAI CTGCAG 2 cut(s) 479, 1165
BspMI ACCTGC 1 cut(s) 492
BspPI GGATC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 730
BsrDI GCAATG 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 5 cut(s) 175, 566, 731, 755, 1144
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 4 cut(s) 116, 117, 345, 530
BssMI GATC 9 cut(s) 7, 38, 297, 662, 825, 880, 931, 1018, 1030
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 3 cut(s) 143, 443, 1086
Bst6I CTCTTC 1 cut(s) 386
BstC8I GCNNGC 6 cut(s) 596, 640, 942, 1073, 1102, 1259
BstDEI CTNAG 4 cut(s) 404, 453, 1046, 1230
BstF5I GGATG 2 cut(s) 10, 806
BstKTI GATC 9 cut(s) 10, 41, 300, 665, 828, 883, 934, 1021, 1033
BstMAI GTCTC 3 cut(s) 52, 1112, 1179
BstMBI GATC 9 cut(s) 7, 38, 297, 662, 825, 880, 931, 1018, 1030
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 1 cut(s) 823
BstPAI GACNNNNGTC 1 cut(s) 81
BstSCI CCNGG 5 cut(s) 115, 116, 529, 530, 801
BstSFI CTRYAG 3 cut(s) 475, 744, 1161
BstSLI GKGCMC 1 cut(s) 733
BstV1I GCAGC 5 cut(s) 489, 530, 610, 738, 968
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 4 cut(s) 128, 157, 427, 1264
BtsCI GGATG 2 cut(s) 10, 806
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 3 cut(s) 196, 762, 1137
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 6 cut(s) 596, 640, 942, 1073, 1102, 1259
CaiI CAGNNNCTG 1 cut(s) 1274
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 3 cut(s) 350, 426, 983
Cfr9I CCCGGG 2 cut(s) 116, 530
Csp6I GTAC 5 cut(s) 669, 788, 1155, 1209, 1234
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 5 cut(s) 776, 820, 1003, 1010, 1303
CviQI GTAC 5 cut(s) 669, 788, 1155, 1209, 1234
DdeI CTNAG 4 cut(s) 404, 453, 1046, 1230
DpnI GATC 9 cut(s) 9, 40, 299, 664, 827, 882, 933, 1020, 1032
DpnII GATC 9 cut(s) 7, 38, 297, 662, 825, 880, 931, 1018, 1030
DrdI GACNNNNNNGTC 1 cut(s) 175
DriI GACNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 1262
Eam1104I CTCTTC 1 cut(s) 386
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 386
EciI GGCGGA 1 cut(s) 1055
Eco47I GGWCC 2 cut(s) 350, 983
Eco57I CTGAAG 2 cut(s) 167, 596
Eco88I CYCGRG 2 cut(s) 116, 530
EcoRII CCWGG 1 cut(s) 801
FaeI CATG 5 cut(s) 779, 823, 1006, 1013, 1306
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 2 cut(s) 363, 1159
FatI CATG 5 cut(s) 775, 819, 1002, 1009, 1302
FauNDI CATATG 1 cut(s) 936
FbaI TGATCA 5 cut(s) 7, 825, 880, 931, 1018
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 8 cut(s) 478, 519, 599, 633, 636, 752, 957, 1262
FokI GGATG 1 cut(s) 793
Fsp4HI GCNGC 8 cut(s) 478, 519, 599, 633, 636, 752, 957, 1262
FspBI CTAG 4 cut(s) 26, 96, 1034, 1152
GluI GCNGC 8 cut(s) 478, 519, 599, 633, 636, 752, 957, 1262
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 4 cut(s) 128, 157, 427, 1264
HapII CCGG 5 cut(s) 117, 232, 424, 531, 924
Hin1II CATG 5 cut(s) 779, 823, 1006, 1013, 1306
HincII GTYRAC 3 cut(s) 168, 1250, 1290
HindII GTYRAC 3 cut(s) 168, 1250, 1290
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 6 cut(s) 151, 176, 194, 622, 1271, 1286
HpaII CCGG 5 cut(s) 117, 232, 424, 531, 924
HphI GGTGA 3 cut(s) 185, 198, 942
Hpy166II GTNNAC 6 cut(s) 168, 709, 718, 950, 1250, 1290
Hpy188III TCNNGA 5 cut(s) 26, 96, 104, 695, 1034
Hpy8I GTNNAC 6 cut(s) 168, 709, 718, 950, 1250, 1290
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 139, 168, 320, 365
HpyCH4III ACNGT 3 cut(s) 143, 443, 1086
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 6 cut(s) 246, 336, 477, 518, 674, 1163
HpyF3I CTNAG 4 cut(s) 404, 453, 1046, 1230
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 5 cut(s) 779, 823, 1006, 1013, 1306
Ksp22I TGATCA 5 cut(s) 7, 825, 880, 931, 1018
Kzo9I GATC 9 cut(s) 7, 38, 297, 662, 825, 880, 931, 1018, 1030
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 2 cut(s) 1042, 1199
Lsp1109I GCAGC 5 cut(s) 489, 530, 610, 738, 968
LweI GCATC 3 cut(s) 19, 769, 815
MaeI CTAG 4 cut(s) 26, 96, 1034, 1152
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 204
MalI GATC 9 cut(s) 9, 40, 299, 664, 827, 882, 933, 1020, 1032
MboI GATC 9 cut(s) 7, 38, 297, 662, 825, 880, 931, 1018, 1030
MboII GAAGA 9 cut(s) 61, 80, 403, 470, 473, 589, 592, 680, 852
MfeI CAATTG 1 cut(s) 977
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 8 cut(s) 340, 415, 524, 556, 859, 977, 1052, 1173
MlyI GAGTC 2 cut(s) 185, 1295
MmeI TCCRAC 2 cut(s) 264, 1022
MroXI GAANNNNTTC 1 cut(s) 844
MseI TTAA 3 cut(s) 378, 552, 813
MslI CAYNNNNRTG 2 cut(s) 225, 1026
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 5 cut(s) 117, 232, 424, 531, 924
MspR9I CCNGG 5 cut(s) 117, 118, 531, 532, 803
MunI CAATTG 1 cut(s) 977
MvaI CCWGG 1 cut(s) 803
NciI CCSGG 4 cut(s) 117, 118, 531, 532
NdeI CATATG 1 cut(s) 936
NdeII GATC 9 cut(s) 7, 38, 297, 662, 825, 880, 931, 1018, 1030
NlaIII CATG 5 cut(s) 779, 823, 1006, 1013, 1306
NlaIV GGNNCC 3 cut(s) 351, 732, 984
NmeAIII GCCGAG 1 cut(s) 1309
NmuCI GTSAC 1 cut(s) 204
NspI RCATGY 1 cut(s) 823
PaqCI CACCTGC 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 4 cut(s) 151, 194, 622, 1271
PkrI GCNGC 8 cut(s) 479, 520, 600, 634, 637, 753, 958, 1263
PleI GAGTC 2 cut(s) 184, 1294
PpsI GAGTC 2 cut(s) 184, 1294
PshAI GACNNNNGTC 1 cut(s) 81
PsiI TTATAA 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 3 cut(s) 351, 732, 984
PspPI GGNCC 3 cut(s) 350, 426, 983
PstI CTGCAG 2 cut(s) 479, 1165
PstNI CAGNNNCTG 1 cut(s) 1274
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 5 cut(s) 670, 789, 1156, 1210, 1235
RsaNI GTAC 5 cut(s) 669, 788, 1155, 1209, 1234
RseI CAYNNNNRTG 2 cut(s) 225, 1026
SalI GTCGAC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 378, 552, 813
SatI GCNGC 8 cut(s) 478, 519, 599, 633, 636, 752, 957, 1262
Sau3AI GATC 9 cut(s) 7, 38, 297, 662, 825, 880, 931, 1018, 1030
Sau96I GGNCC 3 cut(s) 350, 426, 983
ScaI AGTACT 3 cut(s) 670, 789, 1156
SchI GAGTC 2 cut(s) 185, 1295
ScrFI CCNGG 5 cut(s) 117, 118, 531, 532, 803
SduI GDGCHC 1 cut(s) 733
SfaNI GCATC 3 cut(s) 19, 769, 815
SfcI CTRYAG 3 cut(s) 475, 744, 1161
SinI GGWCC 2 cut(s) 350, 983
SmaI CCCGGG 2 cut(s) 118, 532
SmiMI CAYNNNNRTG 2 cut(s) 225, 1026
SmlI CTYRAG 2 cut(s) 42, 783
SmoI CTYRAG 2 cut(s) 42, 783
SpeI ACTAGT 1 cut(s) 1151
Sse9I AATT 8 cut(s) 340, 415, 524, 556, 859, 977, 1052, 1173
SsiI CCGC 6 cut(s) 223, 601, 633, 636, 1040, 1261
SspI AATATT 1 cut(s) 493
SspMI CTAG 4 cut(s) 26, 96, 1034, 1152
StyD4I CCNGG 5 cut(s) 115, 116, 529, 530, 801
TaaI ACNGT 3 cut(s) 143, 443, 1086
TaiI ACGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 72, 167, 665
TaqII GACCGA 1 cut(s) 367
TasI AATT 8 cut(s) 340, 415, 524, 556, 859, 977, 1052, 1173
TatI WGTACW 4 cut(s) 668, 787, 1154, 1208
TauI GCSGC 3 cut(s) 635, 638, 1264
TfiI GAWTC 4 cut(s) 151, 194, 622, 1271
Tru1I TTAA 3 cut(s) 378, 552, 813
Tru9I TTAA 3 cut(s) 378, 552, 813
TscAI CASTG 3 cut(s) 196, 762, 1144
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 5 cut(s) 477, 518, 598, 751, 956
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 80, 302, 998
TspMI CCCGGG 2 cut(s) 116, 530
TspRI CASTG 3 cut(s) 196, 762, 1144
VpaK11BI GGWCC 2 cut(s) 350, 983
XapI RAATTY 1 cut(s) 859
XbaI TCTAGA 3 cut(s) 25, 95, 1033
XceI RCATGY 1 cut(s) 823
XmaI CCCGGG 2 cut(s) 116, 530
XmiI GTMKAC 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 4 cut(s) 26, 96, 1034, 1152
ZrmI AGTACT 3 cut(s) 670, 789, 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.