Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003649

Physical Location & Seq

Genomic Coordinates Reverse (-)

14040779 .. 14044861

Gene Structure 4083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0157300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAAGTATTAAGTGTATTTTCCTATATGACGTGGAGGTGGTGGAGCATTTTAGATAATGAACTAAATGAAAATCACCTCTGCAAAATTTCAGCCAAATTGGTGATCGTTAAGGCATCCAAAACTGCAATTTACAACAATGTACACGAACGGTTCCGGTTCTGCAGATTCGGGTGTGAACAAAATCGGCCCTTTAGCAATTGTATTGTTGGTTTCTTCACTCAAAGCGATTCAGTGGACTTATCTTTCATGTCGTTAGGTTCCAATTTACATTTTACATGGTACAATCTAGAAGGATGGGAACTAGCGAAATTTTTTCATGTTGCTGGCTCTGGCTCAGAGCCCCTTTATGGTGCTTGTGAGGCAATGTTCAAGCCTGATATGGAGCGAGAGGACTTGTTTGAGCCCATATCTGAAGCATTGCTATCATCAGTAGATCGTGATTGTCTGAGTGAGTGGGGATGCCATTTCTATGTGTTAACACCAACTGAGGTAGGAAGGACTTGTAAGGCACAATGGACTGACCTTGCTGTATGTGGCAAATTCCTCGAAATTTCTTCAAGTGGCTGCATTTTCCCCTCTCAAGTTTACTTGACTAGAGCGGCCATAAGCTGTTCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

207

Amino Acids

23.65

Weight (kDa)

5.54

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	106 - 159	1.6e-08	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49690 AT5G65790
fragaria_vesca	FvH4_1g18500 FvH4_1g18500 FvH4_2g32440
malus_domestica	MD02G1191000.v1.1 MD08G1076200.v1.1 MD15G1063300.v1.1 MD15G1302300.v1.1
prunus_persica	Prupe.1G417400_v2.0.a1 Prupe.6G214300_v2.0.a1
pyrus_communis	pycom02g15540 pycom08g06310 pycom15g06010 pycom15g26540
rosa_chinensis	RchiOBHm_Chr2g0109131 RchiOBHm_Chr6g0310231
rosa_laevigata	RLG00000010497 RLG00000017715
rosa_multiflora	Rmu_sc0000186.1_g000014 Rmu_sc0002348.1_g000027
rosa_roxburghii	Rroxscaffold_2G00134480 Rroxscaffold_7G00158720
rosa_rugosa	Rorug02G0157300 Rorug06G0378300 Rorug06G0378400
rosa_samantha	Rh2AG209400 Rh2BG219800 Rh2CG211900 Rh2DG215500 Rh6AG492500 Rh6BG502200 Rh6CG507100 Rh6DG493300
rosa_wichuraiana	Rw6G042860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	602
AciI	CCGC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	4 cut(s)	87, 311, 542, 552
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	2 cut(s)	144, 284
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	373, 561
AjiI	CACGTC	1 cut(s)	33
AluBI	AGCT	1 cut(s)	612
AluI	AGCT	1 cut(s)	612
AoxI	GGCC	2 cut(s)	188, 603
ApeKI	GCWGC	1 cut(s)	567
ApoI	RAATTY	4 cut(s)	87, 311, 542, 552
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	68, 115
BanII	GRGCYC	2 cut(s)	345, 408
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BfaI	CTAG	3 cut(s)	290, 305, 597
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	568, 603
BlsI	GCNGC	2 cut(s)	569, 604
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	2 cut(s)	155, 262
BmsI	GCATC	2 cut(s)	125, 452
BpuEI	CTTGAG	1 cut(s)	567
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse3DI	GCAATG	2 cut(s)	372, 419
BseGI	GGATG	3 cut(s)	116, 302, 467
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	2 cut(s)	372, 419
BseMII	CTCAG	3 cut(s)	351, 440, 480
BseXI	GCAGC	1 cut(s)	554
BshFI	GGCC	2 cut(s)	190, 605
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	350
BsnI	GGCC	2 cut(s)	190, 605
Bsp1286I	GDGCHC	2 cut(s)	345, 408
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	105, 436
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	2 cut(s)	190, 605
BspCNI	CTCAG	3 cut(s)	350, 441, 481
BspLI	GGNNCC	2 cut(s)	155, 262
BspMAI	CTGCAG	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	602
BsrDI	GCAATG	2 cut(s)	372, 419
BsrGI	TGTACA	1 cut(s)	142
BssMI	GATC	2 cut(s)	105, 436
Bst4CI	ACNGT	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	337, 449, 489, 618
BstF5I	GGATG	3 cut(s)	116, 302, 467
BstKTI	GATC	2 cut(s)	108, 439
BstMBI	GATC	2 cut(s)	105, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	190, 605
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	116, 302, 467
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	143, 283
CviAII	CATG	3 cut(s)	250, 279, 320
CviQI	GTAC	2 cut(s)	143, 283
DdeI	CTNAG	4 cut(s)	337, 449, 489, 618
DpnI	GATC	2 cut(s)	107, 438
DpnII	GATC	2 cut(s)	105, 436
EaeI	YGGCCR	1 cut(s)	603
Eco24I	GRGCYC	2 cut(s)	345, 408
Eco57I	CTGAAG	1 cut(s)	435
EcoT38I	GRGCYC	2 cut(s)	345, 408
FaeI	CATG	3 cut(s)	253, 282, 323
FatI	CATG	3 cut(s)	249, 278, 319
Fnu4HI	GCNGC	2 cut(s)	568, 603
FokI	GGATG	3 cut(s)	103, 309, 474
FriOI	GRGCYC	2 cut(s)	345, 408
Fsp4HI	GCNGC	2 cut(s)	568, 603
FspBI	CTAG	3 cut(s)	290, 305, 597
GluI	GCNGC	2 cut(s)	568, 603
HaeIII	GGCC	2 cut(s)	190, 605
HapII	CCGG	1 cut(s)	157
Hin1II	CATG	3 cut(s)	253, 282, 323
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	2 cut(s)	168, 230
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	2 cut(s)	68, 115
Hpy166II	GTNNAC	5 cut(s)	145, 179, 238, 480, 589
Hpy188I	TCNGA	3 cut(s)	340, 415, 450
Hpy188III	TCNNGA	2 cut(s)	290, 440
Hpy8I	GTNNAC	5 cut(s)	145, 179, 238, 480, 589
HpyAV	CCTTC	2 cut(s)	287, 492
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	84, 128, 165, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	4 cut(s)	337, 449, 489, 618
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	253, 282, 323
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	2 cut(s)	105, 436
LmnI	GCTCC	2 cut(s)	45, 385
LpnPI	CCDG	4 cut(s)	170, 312, 318, 390
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	2 cut(s)	125, 452
MaeI	CTAG	3 cut(s)	290, 305, 597
MaeII	ACGT	1 cut(s)	32
MalI	GATC	2 cut(s)	107, 438
MbiI	CCGCTC	1 cut(s)	602
MboI	GATC	2 cut(s)	105, 436
MboII	GAAGA	2 cut(s)	208, 549
MfeI	CAATTG	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	345, 408
MluCI	AATT	8 cut(s)	87, 98, 129, 199, 265, 311, 542, 552
MnlI	CCTC	7 cut(s)	30, 89, 355, 385, 484, 557, 589
MseI	TTAA	3 cut(s)	11, 111, 479
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	2 cut(s)	105, 436
NlaIII	CATG	3 cut(s)	253, 282, 323
NlaIV	GGNNCC	2 cut(s)	155, 262
PfeI	GAWTC	2 cut(s)	168, 230
PkrI	GCNGC	2 cut(s)	569, 604
PspN4I	GGNNCC	2 cut(s)	155, 262
PspPI	GGNCC	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	144, 284
RsaNI	GTAC	2 cut(s)	143, 283
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	3 cut(s)	11, 111, 479
SatI	GCNGC	2 cut(s)	568, 603
Sau3AI	GATC	2 cut(s)	105, 436
Sau96I	GGNCC	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	345, 408
SetI	ASST	7 cut(s)	35, 41, 81, 262, 495, 528, 614
SfaNI	GCATC	2 cut(s)	125, 452
SfcI	CTRYAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	8 cut(s)	87, 98, 129, 199, 265, 311, 542, 552
SsiI	CCGC	1 cut(s)	602
SspMI	CTAG	3 cut(s)	290, 305, 597
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	549
TasI	AATT	8 cut(s)	87, 98, 129, 199, 265, 311, 542, 552
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	2 cut(s)	168, 230
Tru1I	TTAA	3 cut(s)	11, 111, 479
Tru9I	TTAA	3 cut(s)	11, 111, 479
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	1 cut(s)	567
TspDTI	ATGAA	5 cut(s)	17, 75, 84, 238, 308
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	4 cut(s)	87, 311, 542, 552
XbaI	TCTAGA	1 cut(s)	289
XspI	CTAG	3 cut(s)	290, 305, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.