Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003745

Physical Location & Seq

Genomic Coordinates Forward (+)

18465318 .. 18467224

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGTAAGTTCACAACCATTTTCATCATGGCTCTCCTTCTTTGCTCTACGCTAACCTACGCAGCAAGGCTGACTCCGACGACAACCACCGCTTTGTCCAGAGAAAACTCCGTCAAGGAAATTGAAGGAGACAAGGTTGAAGAAGAAAGCTGCAACGGAATTGGAGAAGAAGAATGTTTGATAAGACGAAGCCTTGTTCTTCACACCGATTACATTTATACTCAGAATCACAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008283 GO:0009987 GO:0012505 GO:0030154 GO:0031012 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

79

Amino Acids

8.9

Weight (kDa)

5.26

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSK	PF06404	12 - 79	1.1e-13	Phytosulfokine precursor protein (PSK)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49780 AT5G65870
fragaria_vesca	FvH4_2g03340 FvH4_2g03370 FvH4_2g03370 FvH4_2g32750
malus_domestica	MD05G1105500.v1.1 MD08G1079100.v1.1 MD10G1110000.v1.1 MD15G1066300.v1.1
prunus_persica	Prupe.1G420000_v2.0.a1 Prupe.8G150200_v2.0.a1
pyrus_communis	pycom05g10250 pycom08g06550 pycom10g09530 pycom15g06250
rosa_chinensis	RchiOBHm_Chr6g0248481 RchiOBHm_Chr6g0309921
rosa_multiflora	Rmu_sc0000294.1_g000006 Rmu_sc0002553.1_g000013
rosa_roxburghii	Rroxscaffold_7G00159040 Rroxscaffold_7G00213260
rosa_rugosa	Rorug05G0531600.1 Rorug06G0375900
rosa_samantha	Rh6AG047500 Rh6AG489800 Rh6BG043800 Rh6BG499200 Rh6CG040500 Rh6CG504100 Rh6DG037000 Rh6DG490300
rosa_wichuraiana	Rw6G004120 Rw6G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	125, 140
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	62, 150
BbvI	GCAGC	2 cut(s)	74, 137
BcoDI	GTCTC	1 cut(s)	123
BisI	GCNGC	2 cut(s)	63, 151
BlsI	GCNGC	2 cut(s)	64, 152
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
BseMII	CTCAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	74, 137
BsmAI	GTCTC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	74, 137
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	5 cut(s)	32, 70, 150, 192, 235
CviKI_1	RGCY	5 cut(s)	32, 70, 150, 192, 235
DdeI	CTNAG	1 cut(s)	222
FaeI	CATG	1 cut(s)	31
FaiI	YATR	2 cut(s)	29, 219
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	63, 151
Fsp4HI	GCNGC	2 cut(s)	63, 151
GluI	GCNGC	2 cut(s)	63, 151
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	2 cut(s)	73, 226
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	78, 225
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	47, 119
HpyCH4V	TGCA	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	31
LpnPI	CCDG	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	74, 137
MboII	GAAGA	5 cut(s)	152, 155, 179, 182, 191
MluCI	AATT	2 cut(s)	120, 159
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	64, 152
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
SatI	GCNGC	2 cut(s)	63, 151
SchI	GAGTC	1 cut(s)	67
SetI	ASST	3 cut(s)	59, 138, 152
SgeI	CNNG	6 cut(s)	40, 78, 111, 127, 145, 206
Sse9I	AATT	2 cut(s)	120, 159
SsiI	CCGC	1 cut(s)	90
TasI	AATT	2 cut(s)	120, 159
TfiI	GAWTC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	62, 150
TspDTI	ATGAA	1 cut(s)	13
TspGWI	ACGGA	2 cut(s)	100, 171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.