Rw6G004120

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003745
Physical Location & Seq
Forward (+)
6688015 .. 6688723
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004120.1

Sequence Viewer

Length: 261 bp
ATGTCGTCCTGCAAGCTCACCAACCTCTGCATCGTCGCCGCCCTCCTCCTCTTCCTCTCATTAACCTCCACAGCTCGGGAGATGCCTTCTTCTCCAGATGTTAGTACAATGAAAGTCCAACCTGAGGGGTTGAAGGATGCTCAAGTCGAAAAAGTGATGGCGGAAGAGAGCTGCGAGGGAGTTGGAGAAGAAGAGTGTCTGATGAGAAGAACTCTTGCTGCTCACATTGATTATATCTATACACAGAAGAACAACCCTTGA

Protein Analysis

86

Amino Acids

9.47

Weight (kDa)

4.84

Isoelectric Point (pI)

63.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 18 - 86 2e-16 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 39, 161
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 75, 124
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 3 cut(s) 16, 74, 171
AluI AGCT 3 cut(s) 16, 74, 171
Ama87I CYCGRG 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 171, 218
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 75
AxyI CCTNAGG 1 cut(s) 123
BbvI GCAGC 2 cut(s) 158, 205
BccI CCATC 1 cut(s) 151
BisI GCNGC 3 cut(s) 39, 172, 219
BlsI GCNGC 3 cut(s) 40, 173, 220
BmeT110I CYCGRG 1 cut(s) 75
BmsI GCATC 3 cut(s) 39, 72, 127
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 124
Bse21I CCTNAGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 75, 124
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 2 cut(s) 35, 38
BseXI GCAGC 2 cut(s) 158, 205
BsiHKCI CYCGRG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 75, 124
BsoBI CYCGRG 1 cut(s) 75
BspACI CCGC 2 cut(s) 39, 161
BspCNI CTCAG 1 cut(s) 115
Bst6I CTCTTC 3 cut(s) 56, 159, 186
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 158, 205
Bsu36I CCTNAGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 105
CviJI RGCY 3 cut(s) 16, 74, 171
CviKI_1 RGCY 3 cut(s) 16, 74, 171
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 123
Eam1104I CTCTTC 3 cut(s) 56, 159, 186
EarI CTCTTC 3 cut(s) 56, 159, 186
EciI GGCGGA 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 75
FaiI YATR 2 cut(s) 234, 240
Fnu4HI GCNGC 3 cut(s) 39, 172, 219
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 39, 172, 219
GluI GCNGC 3 cut(s) 39, 172, 219
GsuI CTGGAG 1 cut(s) 78
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 77, 95
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 96, 127
HpyCH4V TGCA 2 cut(s) 12, 30
HpyF3I CTNAG 1 cut(s) 123
LpnPI CCDG 3 cut(s) 22, 108, 135
Lsp1109I GCAGC 2 cut(s) 158, 205
LweI GCATC 3 cut(s) 39, 72, 127
MboII GAAGA 7 cut(s) 43, 81, 176, 200, 203, 219, 259
MmeI TCCRAC 2 cut(s) 142, 163
MnlI CCTC 8 cut(s) 35, 53, 56, 59, 65, 76, 118, 169
MseI TTAA 1 cut(s) 62
PkrI GCNGC 3 cut(s) 40, 173, 220
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 3 cut(s) 39, 172, 219
SetI ASST 6 cut(s) 18, 27, 68, 76, 124, 173
SfaNI GCATC 3 cut(s) 39, 72, 127
SgeI CNNG 9 cut(s) 21, 25, 87, 89, 107, 134, 155, 187, 227
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
SsiI CCGC 2 cut(s) 39, 161
TaqI TCGA 1 cut(s) 147
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 2 cut(s) 171, 218
TspDTI ATGAA 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.