Rh6AG489800

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003745
Physical Location & Seq
Reverse (-)
66658141 .. 66659016
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG489800.1

Sequence Viewer

Length: 267 bp
ATGGCCAAGTTAACCGCCCTTTTCACCATCGCCGCTCTCCTCCTCCTCCTCAGCTCTGAGCTAACCTCCGCGGTTCGCCCGGAGCCTGCTTTCACCAACAGCGCGCTCAAAACCGGCCAACACCAAGATGTAGGAGCAGATCAGAACATTAATGCCCAGGATGGCGAGGTTAGCTGTGAAGGAGTGAACGAGGAGGAGTGCCTGATGCGAAGAACGCTGGCTGCTCATGTGGATTATATATATACTCAGAAGCACAACAAGCCATGA

Protein Analysis

88

Amino Acids

9.6

Weight (kDa)

5.17

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 13 - 87 2.8e-17 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 35
AccII CGCG 2 cut(s) 71, 104
AciI CCGC 4 cut(s) 15, 33, 69, 71
AcoI YGGCCR 2 cut(s) 3, 115
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 3 cut(s) 54, 61, 174
AluI AGCT 3 cut(s) 54, 61, 174
AoxI GGCC 2 cut(s) 3, 115
ApeKI GCWGC 1 cut(s) 221
AseI ATTAAT 1 cut(s) 150
AspLEI GCGC 2 cut(s) 104, 106
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 16, 85
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 35, 155
BciT130I CCWGG 1 cut(s) 158
BcnI CCSGG 1 cut(s) 80
BisI GCNGC 2 cut(s) 33, 222
BlsI GCNGC 2 cut(s) 34, 223
Bme1390I CCNGG 2 cut(s) 80, 158
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 2 cut(s) 80, 158
BmsI GCATC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 50, 82
Bpu10I CCTNAGC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 69, 156
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 69, 156
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 3 cut(s) 48, 64, 260
BsePI GCGCGC 1 cut(s) 102
BseRI GAGGAG 6 cut(s) 29, 32, 35, 38, 206, 209
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 2 cut(s) 71, 104
BshFI GGCC 2 cut(s) 5, 117
BsiSI CCGG 2 cut(s) 80, 114
BsnI GGCC 2 cut(s) 5, 117
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 4 cut(s) 15, 33, 69, 71
BspANI GGCC 2 cut(s) 5, 117
BspCNI CTCAG 3 cut(s) 49, 63, 259
BspFNI CGCG 2 cut(s) 71, 104
BspLI GGNNCC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 69, 156
BssHII GCGCGC 1 cut(s) 102
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 87, 104, 219
BstDEI CTNAG 3 cut(s) 50, 57, 246
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 2 cut(s) 71, 104
BstHHI GCGC 2 cut(s) 104, 106
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 3 cut(s) 171, 214, 259
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 78, 156
BstUI CGCG 2 cut(s) 71, 104
BstV1I GCAGC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 5, 117
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 87, 104, 219
CfoI GCGC 2 cut(s) 104, 106
Cfr10I RCCGGY 1 cut(s) 113
Cfr42I CCGCGG 1 cut(s) 72
CviAII CATG 2 cut(s) 227, 264
CviJI RGCY 8 cut(s) 5, 54, 61, 85, 117, 174, 221, 262
CviKI_1 RGCY 8 cut(s) 5, 54, 61, 85, 117, 174, 221, 262
DdeI CTNAG 3 cut(s) 50, 57, 246
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 2 cut(s) 3, 115
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 230, 267
FaiI YATR 6 cut(s) 228, 237, 239, 241, 243, 265
FatI CATG 2 cut(s) 226, 263
Fnu4HI GCNGC 2 cut(s) 33, 222
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 33, 222
GlaI GCGC 2 cut(s) 103, 105
GluI GCNGC 2 cut(s) 33, 222
HaeIII GGCC 2 cut(s) 5, 117
HapII CCGG 2 cut(s) 80, 114
HhaI GCGC 2 cut(s) 104, 106
Hin1II CATG 2 cut(s) 230, 267
Hin6I GCGC 2 cut(s) 102, 104
HinP1I GCGC 2 cut(s) 102, 104
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HpaI GTTAAC 1 cut(s) 12
HpaII CCGG 2 cut(s) 80, 114
HphI GGTGA 2 cut(s) 16, 85
Hpy166II GTNNAC 2 cut(s) 12, 187
Hpy188I TCNGA 3 cut(s) 58, 144, 249
Hpy8I GTNNAC 2 cut(s) 12, 187
HpyAV CCTTC 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 214, 259
HpyF3I CTNAG 3 cut(s) 50, 57, 246
Hsp92II CATG 2 cut(s) 230, 267
HspAI GCGC 2 cut(s) 102, 104
KspAI GTTAAC 1 cut(s) 12
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 82, 134
LpnPI CCDG 7 cut(s) 93, 99, 127, 143, 170, 203, 215
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 195
MalI GATC 1 cut(s) 141
MbiI CCGCTC 1 cut(s) 35
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 50, 53, 56, 59, 76, 160, 184, 187
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 11, 150
MslI CAYNNNNRTG 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 80, 114
MspR9I CCNGG 2 cut(s) 80, 158
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 2 cut(s) 71, 104
MwoI GCNNNNNNNGC 3 cut(s) 171, 214, 259
NciI CCSGG 1 cut(s) 80
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 230, 267
NlaIV GGNNCC 1 cut(s) 84
PauI GCGCGC 1 cut(s) 102
PkrI GCNGC 2 cut(s) 34, 223
PshBI ATTAAT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 84
PteI GCGCGC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 126
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 11, 150
SatI GCNGC 2 cut(s) 33, 222
Sau3AI GATC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 80, 158
SetI ASST 5 cut(s) 56, 63, 68, 171, 176
SfaNI GCATC 1 cut(s) 195
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 126
SsiI CCGC 4 cut(s) 15, 33, 69, 71
StyD4I CCNGG 2 cut(s) 78, 156
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 11, 150
Tru9I TTAA 2 cut(s) 11, 150
TseI GCWGC 1 cut(s) 221
VspI ATTAAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.