Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003745

Physical Location & Seq

Genomic Coordinates Forward (+)

3838503 .. 3839962

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTCTCAACCCAAGCACTATGGTTTGAAGAAGTGACCAAAAATAGATGTGATAAATCTCCACTCGCTTCTCACTTCCCTTCACACCTTGTATTCCCCTTCTCCACAGAAACTCAAAACAAAAAAGAAGAAGAAAAAATGGCTAAATATATTATCACCTTCTTCACCATAGCTCTGCTCCTCAGTTTTCAACTCACAGCCTTCGCTGCTCGTCCAGTCCCTGCTGCTTTCACCAACAACGCTCTCAAAACCCAACACCAAGACATAGACGCGGAGATCGTTGCAGCGGAGGAAGGCGGGAGCTGCGAAGGTGTAGCGGAGGAGGAGTGCCTGATGAGGAGGACATTGGCGGCTCATGTGGATTACATATATACACAGAAGCACAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008283 GO:0009987 GO:0012505 GO:0030154 GO:0031012 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

131

Amino Acids

14.67

Weight (kDa)

5.7

Isoelectric Point (pI)

58.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSK	PF06404	60 - 130	2.1e-15	Phytosulfokine precursor protein (PSK)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49780 AT5G65870
fragaria_vesca	FvH4_2g03340 FvH4_2g03370 FvH4_2g03370 FvH4_2g32750
malus_domestica	MD05G1105500.v1.1 MD08G1079100.v1.1 MD10G1110000.v1.1 MD15G1066300.v1.1
prunus_persica	Prupe.1G420000_v2.0.a1 Prupe.8G150200_v2.0.a1
pyrus_communis	pycom05g10250 pycom08g06550 pycom10g09530 pycom15g06250
rosa_chinensis	RchiOBHm_Chr6g0248481 RchiOBHm_Chr6g0309921
rosa_multiflora	Rmu_sc0000294.1_g000006 Rmu_sc0002553.1_g000013
rosa_roxburghii	Rroxscaffold_7G00159040 Rroxscaffold_7G00213260
rosa_rugosa	Rorug05G0531600.1 Rorug06G0375900
rosa_samantha	Rh6AG047500 Rh6AG489800 Rh6BG043800 Rh6BG499200 Rh6CG040500 Rh6CG504100 Rh6DG037000 Rh6DG490300
rosa_wichuraiana	Rw6G004120 Rw6G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	272
AciI	CCGC	5 cut(s)	272, 287, 297, 317, 350
AgsI	TTSAA	2 cut(s)	29, 191
AluBI	AGCT	2 cut(s)	173, 303
AluI	AGCT	2 cut(s)	173, 303
Alw26I	GTCTC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	221
ApeKI	GCWGC	4 cut(s)	206, 224, 284, 303
AsuHPI	GGTGA	3 cut(s)	148, 157, 223
BbvI	GCAGC	4 cut(s)	193, 211, 290, 296
BcoDI	GTCTC	1 cut(s)	10
BisI	GCNGC	5 cut(s)	207, 225, 285, 304, 351
BlsI	GCNGC	5 cut(s)	208, 226, 286, 305, 352
BsaI	GGTCTC	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bse1I	ACTGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	4 cut(s)	170, 335, 338, 352
BseXI	GCAGC	4 cut(s)	193, 211, 290, 296
Bsh1236I	CGCG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	5 cut(s)	272, 287, 297, 317, 350
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	182
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 303
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	193, 211, 290, 296
CaiI	CAGNNNCTG	1 cut(s)	221
CseI	GACGC	1 cut(s)	278
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	143, 173, 200, 303, 353, 388
CviKI_1	RGCY	6 cut(s)	143, 173, 200, 303, 353, 388
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	10
FaeI	CATG	1 cut(s)	359
FaiI	YATR	8 cut(s)	22, 150, 170, 266, 357, 368, 370, 372
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	355
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	5 cut(s)	207, 225, 285, 304, 351
Fsp4HI	GCNGC	5 cut(s)	207, 225, 285, 304, 351
GluI	GCNGC	5 cut(s)	207, 225, 285, 304, 351
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	359
HphI	GGTGA	3 cut(s)	148, 157, 223
HpyAV	CCTTC	6 cut(s)	90, 109, 169, 211, 287, 302
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 303
HpyF3I	CTNAG	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	183, 300
LpnPI	CCDG	3 cut(s)	228, 234, 344
Lsp1109I	GCAGC	4 cut(s)	193, 211, 290, 296
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	4 cut(s)	41, 140, 143, 154
MnlI	CCTC	6 cut(s)	191, 283, 313, 316, 330, 333
MspA1I	CMGCKG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	206, 303
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	208, 226, 286, 305, 352
PstNI	CAGNNNCTG	1 cut(s)	221
SatI	GCNGC	5 cut(s)	207, 225, 285, 304, 351
Sau3AI	GATC	1 cut(s)	276
SetI	ASST	5 cut(s)	90, 161, 175, 305, 313
SsiI	CCGC	5 cut(s)	272, 287, 297, 317, 350
TauI	GCSGC	1 cut(s)	353
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	4 cut(s)	206, 224, 284, 303
Tsp45I	GTSAC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.