Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003745

Physical Location & Seq

Genomic Coordinates Reverse (-)

12641282 .. 12641667

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCCGTCCAAGCTCACCAGCCTCTGTGTGGTTGCCCTCCTCCTCTTTCTCTCATTATTCAACACAACGGCGCGGCCGTTGCCTTCTTCTTCTTGTGATGTCAGTGCAGTGAAAGTTCAACATGAGTTGAAGGATGTTGAGGTAGAAAAAGCCATGGTGGAGGAAAGTTGTGAAGGAGTTGGGGAAGATGAGTGCCTAATGAGAAGAACTCTTGCGGCTTATATTGATTACATCTATACGCAGAAGCGCAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008283 GO:0009987 GO:0012505 GO:0030154 GO:0031012 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

86

Amino Acids

9.5

Weight (kDa)

5.31

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSK	PF06404	13 - 84	7.8e-15	Phytosulfokine precursor protein (PSK)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49780 AT5G65870
fragaria_vesca	FvH4_2g03340 FvH4_2g03370 FvH4_2g03370 FvH4_2g32750
malus_domestica	MD05G1105500.v1.1 MD08G1079100.v1.1 MD10G1110000.v1.1 MD15G1066300.v1.1
prunus_persica	Prupe.1G420000_v2.0.a1 Prupe.8G150200_v2.0.a1
pyrus_communis	pycom05g10250 pycom08g06550 pycom10g09530 pycom15g06250
rosa_chinensis	RchiOBHm_Chr6g0248481 RchiOBHm_Chr6g0309921
rosa_multiflora	Rmu_sc0000294.1_g000006 Rmu_sc0002553.1_g000013
rosa_roxburghii	Rroxscaffold_7G00159040 Rroxscaffold_7G00213260
rosa_rugosa	Rorug05G0531600.1 Rorug06G0375900
rosa_samantha	Rh6AG047500 Rh6AG489800 Rh6BG043800 Rh6BG499200 Rh6CG040500 Rh6CG504100 Rh6DG037000 Rh6DG490300
rosa_wichuraiana	Rw6G004120 Rw6G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	73, 215
AcoI	YGGCCR	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	61, 119, 130
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	73, 249
AsuHPI	GGTGA	1 cut(s)	7
BceAI	ACGGC	2 cut(s)	61, 84
BisI	GCNGC	2 cut(s)	74, 216
BlsI	GCNGC	2 cut(s)	75, 217
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	29, 32
BseX3I	CGGCCG	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	28
BsnI	GGCC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	73, 215
BspANI	GGCC	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	73, 249
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 79
BstUI	CGCG	1 cut(s)	73
BstZI	CGGCCG	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	109, 114
Cac8I	GCNNGC	1 cut(s)	251
CaiI	CAGNNNCTG	1 cut(s)	24
CfoI	GCGC	2 cut(s)	73, 249
CviAII	CATG	2 cut(s)	122, 154
CviJI	RGCY	6 cut(s)	13, 21, 76, 152, 218, 253
CviKI_1	RGCY	6 cut(s)	13, 21, 76, 152, 218, 253
EaeI	YGGCCR	1 cut(s)	74
EagI	CGGCCG	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	125, 157
FaiI	YATR	5 cut(s)	123, 155, 222, 237, 256
FatI	CATG	2 cut(s)	121, 153
Fnu4HI	GCNGC	2 cut(s)	74, 216
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	74, 216
GlaI	GCGC	2 cut(s)	72, 248
GluI	GCNGC	2 cut(s)	74, 216
HaeIII	GGCC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	73, 249
Hin1II	CATG	2 cut(s)	125, 157
Hin6I	GCGC	2 cut(s)	71, 247
HinP1I	GCGC	2 cut(s)	71, 247
HphI	GGTGA	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	93, 124, 167
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 79
Hsp92II	CATG	2 cut(s)	125, 157
HspAI	GCGC	2 cut(s)	71, 247
LpnPI	CCDG	1 cut(s)	31
MboII	GAAGA	4 cut(s)	78, 81, 197, 216
MnlI	CCTC	6 cut(s)	32, 47, 50, 53, 133, 154
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	2 cut(s)	10, 79
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	2 cut(s)	125, 157
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	75, 217
PstNI	CAGNNNCTG	1 cut(s)	24
SatI	GCNGC	2 cut(s)	74, 216
SetI	ASST	2 cut(s)	15, 144
SgeI	CNNG	7 cut(s)	22, 30, 84, 105, 134, 166, 224
SsiI	CCGC	2 cut(s)	73, 215
StyI	CCWWGG	1 cut(s)	153
TauI	GCSGC	2 cut(s)	76, 218
TscAI	CASTG	2 cut(s)	109, 114
TspRI	CASTG	2 cut(s)	109, 114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.