Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003745

Physical Location & Seq

Genomic Coordinates Forward (+)

2656617 .. 2657689

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTCGTCTTGCAAGCTCACCAACCTCTGCATCATCGCCGCTCTCCTCCTCTTCCTCTCAATAACCTCCACTGCTCGGGAGGTGCCTTCTTCTCCAGACGTTACTACAATGAAAGTCCAACATGAGGGGTTGAAGGATGCTGAAGTCGAAAAAGTGATGGCGGAGGAGAGCTGCGAGGGAGTTGATGAAGAAGAGTGTCTGATGAGAAGAACTCTTGCTGTTCACATTGATTGTATCTATAGACATAAGGGCAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008283 GO:0009987 GO:0012505 GO:0030154 GO:0031012 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

87

Amino Acids

9.54

Weight (kDa)

5.06

Isoelectric Point (pI)

61.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSK	PF06404	18 - 85	8.9e-11	Phytosulfokine precursor protein (PSK)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49780 AT5G65870
fragaria_vesca	FvH4_2g03340 FvH4_2g03370 FvH4_2g03370 FvH4_2g32750
malus_domestica	MD05G1105500.v1.1 MD08G1079100.v1.1 MD10G1110000.v1.1 MD15G1066300.v1.1
prunus_persica	Prupe.1G420000_v2.0.a1 Prupe.8G150200_v2.0.a1
pyrus_communis	pycom05g10250 pycom08g06550 pycom10g09530 pycom15g06250
rosa_chinensis	RchiOBHm_Chr6g0248481 RchiOBHm_Chr6g0309921
rosa_multiflora	Rmu_sc0000294.1_g000006 Rmu_sc0002553.1_g000013
rosa_roxburghii	Rroxscaffold_7G00159040 Rroxscaffold_7G00213260
rosa_rugosa	Rorug05G0531600.1 Rorug06G0375900
rosa_samantha	Rh6AG047500 Rh6AG489800 Rh6BG043800 Rh6BG499200 Rh6CG040500 Rh6CG504100 Rh6DG037000 Rh6DG490300
rosa_wichuraiana	Rw6G004120 Rw6G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AccBSI	CCGCTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	39, 161
AcuI	CTGAAG	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	75, 124
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	2 cut(s)	16, 171
AluI	AGCT	2 cut(s)	16, 171
Ama87I	CYCGRG	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	39, 172
BlsI	GCNGC	2 cut(s)	40, 173
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	2 cut(s)	39, 127
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 124
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	75, 124
BseRI	GAGGAG	3 cut(s)	35, 38, 179
BseXI	GCAGC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	75, 124
BsoBI	CYCGRG	1 cut(s)	75
BspACI	CCGC	2 cut(s)	39, 161
BspLI	GGNNCC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	82
BsrBI	CCGCTC	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	56, 186
BstC8I	GCNNGC	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	14
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	2 cut(s)	16, 171
CviKI_1	RGCY	2 cut(s)	16, 171
Eam1104I	CTCTTC	2 cut(s)	56, 186
EarI	CTCTTC	2 cut(s)	56, 186
EciI	GGCGGA	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	75
FaeI	CATG	1 cut(s)	125
FaiI	YATR	3 cut(s)	123, 240, 246
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	39, 172
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	39, 172
GluI	GCNGC	2 cut(s)	39, 172
GsuI	CTGGAG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	77, 95
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	96, 127
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	12, 30
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	125
LpnPI	CCDG	1 cut(s)	108
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	2 cut(s)	39, 127
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	100
MbiI	CCGCTC	1 cut(s)	41
MboII	GAAGA	5 cut(s)	43, 81, 200, 203, 219
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	35, 56, 59, 65, 73, 76, 118, 157, 169
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	40, 173
PspN4I	GGNNCC	1 cut(s)	84
SatI	GCNGC	2 cut(s)	39, 172
SetI	ASST	6 cut(s)	18, 27, 68, 84, 102, 173
SfaNI	GCATC	2 cut(s)	39, 127
SfcI	CTRYAG	1 cut(s)	238
SgeI	CNNG	8 cut(s)	21, 25, 87, 89, 107, 134, 187, 227
SsiI	CCGC	2 cut(s)	39, 161
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	147
TauI	GCSGC	1 cut(s)	41
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	125, 201
TspRI	CASTG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.