Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0003745

Physical Location & Seq

Genomic Coordinates Forward (+)

87510 .. 87871

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002553.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgtcgtcctgcaagctcaccaacctctgcatcgtcgccgccctcctcctcttcctctcattaacctccacagctcgggagatgccttcttctccagatgttagtacaatgaaagtccaacctgaggggttgaaggatgctcaagtcgaaaaagtgatggcggaagagagctgcgagggagttggagaagaagagtgtctgatgagaagaactcttgctgctcacattgattatatctatacacagaagaacaacccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008283 GO:0009987 GO:0012505 GO:0030154 GO:0031012 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

86

Amino Acids

9.47

Weight (kDa)

4.84

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49780 AT5G65870
fragaria_vesca	FvH4_2g03340 FvH4_2g03370 FvH4_2g03370 FvH4_2g32750
malus_domestica	MD05G1105500.v1.1 MD08G1079100.v1.1 MD10G1110000.v1.1 MD15G1066300.v1.1
prunus_persica	Prupe.1G420000_v2.0.a1 Prupe.8G150200_v2.0.a1
pyrus_communis	pycom05g10250 pycom08g06550 pycom10g09530 pycom15g06250
rosa_chinensis	RchiOBHm_Chr6g0248481 RchiOBHm_Chr6g0309921
rosa_multiflora	Rmu_sc0000294.1_g000006 Rmu_sc0002553.1_g000013
rosa_roxburghii	Rroxscaffold_7G00159040 Rroxscaffold_7G00213260
rosa_rugosa	Rorug05G0531600.1 Rorug06G0375900
rosa_samantha	Rh6AG047500 Rh6AG489800 Rh6BG043800 Rh6BG499200 Rh6CG040500 Rh6CG504100 Rh6DG037000 Rh6DG490300
rosa_wichuraiana	Rw6G004120 Rw6G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	39, 161
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	75, 124
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	3 cut(s)	16, 74, 171
AluI	AGCT	3 cut(s)	16, 74, 171
Ama87I	CYCGRG	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	171, 218
AsuHPI	GGTGA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	75
AxyI	CCTNAGG	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	158, 205
BccI	CCATC	1 cut(s)	151
BisI	GCNGC	3 cut(s)	39, 172, 219
BlsI	GCNGC	3 cut(s)	40, 173, 220
BmeT110I	CYCGRG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	39, 72, 127
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 124
Bse21I	CCTNAGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	75, 124
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	35, 38
BseXI	GCAGC	2 cut(s)	158, 205
BsiHKCI	CYCGRG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	75, 124
BsoBI	CYCGRG	1 cut(s)	75
BspACI	CCGC	2 cut(s)	39, 161
BspCNI	CTCAG	1 cut(s)	115
Bst6I	CTCTTC	3 cut(s)	56, 159, 186
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	158, 205
Bsu36I	CCTNAGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	105
CviJI	RGCY	3 cut(s)	16, 74, 171
CviKI_1	RGCY	3 cut(s)	16, 74, 171
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	123
Eam1104I	CTCTTC	3 cut(s)	56, 159, 186
EarI	CTCTTC	3 cut(s)	56, 159, 186
EciI	GGCGGA	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	75
FaiI	YATR	2 cut(s)	234, 240
Fnu4HI	GCNGC	3 cut(s)	39, 172, 219
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	39, 172, 219
GluI	GCNGC	3 cut(s)	39, 172, 219
GsuI	CTGGAG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	77, 95
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	96, 127
HpyCH4V	TGCA	2 cut(s)	12, 30
HpyF3I	CTNAG	1 cut(s)	123
LpnPI	CCDG	3 cut(s)	22, 108, 135
Lsp1109I	GCAGC	2 cut(s)	158, 205
LweI	GCATC	3 cut(s)	39, 72, 127
MboII	GAAGA	7 cut(s)	43, 81, 176, 200, 203, 219, 259
MmeI	TCCRAC	2 cut(s)	142, 163
MnlI	CCTC	8 cut(s)	35, 53, 56, 59, 65, 76, 118, 169
MseI	TTAA	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	40, 173, 220
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	3 cut(s)	39, 172, 219
SetI	ASST	6 cut(s)	18, 27, 68, 76, 124, 173
SfaNI	GCATC	3 cut(s)	39, 72, 127
SgeI	CNNG	9 cut(s)	21, 25, 87, 89, 107, 134, 155, 187, 227
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
SsiI	CCGC	2 cut(s)	39, 161
TaqI	TCGA	1 cut(s)	147
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TseI	GCWGC	2 cut(s)	171, 218
TspDTI	ATGAA	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.