FvH4_2g03340

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003745
Physical Location & Seq
Forward (+)
2641949 .. 2642721
773 bp
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UTR
Exon/CDS
Intron
FvH4_2g03340.t1

Sequence Viewer

Length: 261 bp
ATGTCGTCTTGCAAGCTCACCAACCTCTGCATCATCGCCGCTCTCCTCCTCTTCCTCTCAATAACCTCCACTGCTCGGGAGATGCCTTCTTCTCCAGACGTTACTACAATGAAAGTCCAACATGAGGGGTTGAAGGATGCTGAAGTGGAAAAAGTGATGACGGAGGAGAGCTGCGAGGGAGTTGGTGAAGAAGAGTGTCTGATGAGAAGAACTCTTGCTGCTCACATTGATTATATCTATACACAGAAGAACAACCCTTGA

Protein Analysis

87

Amino Acids

9.57

Weight (kDa)

4.88

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 16 - 86 8.5e-17 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AciI CCGC 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 75, 124
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 2 cut(s) 16, 171
AluI AGCT 2 cut(s) 16, 171
Ama87I CYCGRG 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 171, 218
AsuHPI GGTGA 2 cut(s) 10, 197
AvaI CYCGRG 1 cut(s) 75
BbvI GCAGC 2 cut(s) 158, 205
BisI GCNGC 3 cut(s) 39, 172, 219
BlsI GCNGC 3 cut(s) 40, 173, 220
BmeT110I CYCGRG 1 cut(s) 75
BmsI GCATC 3 cut(s) 39, 72, 127
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 124
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 75, 124
BseRI GAGGAG 3 cut(s) 35, 38, 179
BseXI GCAGC 2 cut(s) 158, 205
BsiHKCI CYCGRG 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 75, 124
BsoBI CYCGRG 1 cut(s) 75
BspACI CCGC 1 cut(s) 39
BsrBI CCGCTC 1 cut(s) 41
Bst6I CTCTTC 2 cut(s) 56, 186
BstC8I GCNNGC 1 cut(s) 14
BstF5I GGATG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 158, 205
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 14
CviAII CATG 1 cut(s) 122
CviJI RGCY 2 cut(s) 16, 171
CviKI_1 RGCY 2 cut(s) 16, 171
Eam1104I CTCTTC 2 cut(s) 56, 186
EarI CTCTTC 2 cut(s) 56, 186
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 75
FaeI CATG 1 cut(s) 125
FaiI YATR 3 cut(s) 123, 234, 240
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 39, 172, 219
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 39, 172, 219
GluI GCNGC 3 cut(s) 39, 172, 219
GsuI CTGGAG 1 cut(s) 78
Hin1II CATG 1 cut(s) 125
HphI GGTGA 2 cut(s) 10, 197
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 77, 95
HpyAV CCTTC 2 cut(s) 96, 127
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 12, 30
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 1 cut(s) 125
LpnPI CCDG 1 cut(s) 108
Lsp1109I GCAGC 2 cut(s) 158, 205
LweI GCATC 3 cut(s) 39, 72, 127
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 100
MbiI CCGCTC 1 cut(s) 41
MboII GAAGA 6 cut(s) 43, 81, 200, 203, 219, 259
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 8 cut(s) 35, 56, 59, 65, 76, 118, 157, 169
NlaIII CATG 1 cut(s) 125
PkrI GCNGC 3 cut(s) 40, 173, 220
SatI GCNGC 3 cut(s) 39, 172, 219
SetI ASST 5 cut(s) 18, 27, 68, 102, 173
SfaNI GCATC 3 cut(s) 39, 72, 127
SgeI CNNG 8 cut(s) 21, 25, 87, 89, 107, 134, 187, 227
SsiI CCGC 1 cut(s) 39
TaiI ACGT 1 cut(s) 102
TauI GCSGC 1 cut(s) 41
TscAI CASTG 1 cut(s) 76
TseI GCWGC 2 cut(s) 171, 218
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.