Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003745

Physical Location & Seq

Genomic Coordinates Reverse (-)

21872939 .. 21873522

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1105500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTCGTCCAAGCTCACCAGCCTCTGTGTGGTTGCCCTCCTCCTCTTCCTTGCATTATCCGGCATGACGGCGCGGCCGTTGCTTTCTTCTTCTTCTTCTGATGTCAGTGCAGTGAAAGTTCAACCTGAGTTGAAGGATGTTGAGGTAGAAAAAGCCATGGTGGAGGAAAGTTGTGATGGAGTTGGAGAAGATGAGTGCCTGATGAGAAGAACTCTTGCGGCTCACATTGATTACATCTATACACAGAAGCACAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008283 GO:0009987 GO:0012505 GO:0030154 GO:0031012 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

87

Amino Acids

9.36

Weight (kDa)

4.97

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSK	PF06404	14 - 86	1.9e-16	Phytosulfokine precursor protein (PSK)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49780 AT5G65870
fragaria_vesca	FvH4_2g03340 FvH4_2g03370 FvH4_2g03370 FvH4_2g32750
malus_domestica	MD05G1105500.v1.1 MD08G1079100.v1.1 MD10G1110000.v1.1 MD15G1066300.v1.1
prunus_persica	Prupe.1G420000_v2.0.a1 Prupe.8G150200_v2.0.a1
pyrus_communis	pycom05g10250 pycom08g06550 pycom10g09530 pycom15g06250
rosa_chinensis	RchiOBHm_Chr6g0248481 RchiOBHm_Chr6g0309921
rosa_multiflora	Rmu_sc0000294.1_g000006 Rmu_sc0002553.1_g000013
rosa_roxburghii	Rroxscaffold_7G00159040 Rroxscaffold_7G00213260
rosa_rugosa	Rorug05G0531600.1 Rorug06G0375900
rosa_samantha	Rh6AG047500 Rh6AG489800 Rh6BG043800 Rh6BG499200 Rh6CG040500 Rh6CG504100 Rh6DG037000 Rh6DG490300
rosa_wichuraiana	Rw6G004120 Rw6G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	73, 218
AcoI	YGGCCR	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	122, 133
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	7
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	61, 84
BisI	GCNGC	2 cut(s)	74, 219
BlsI	GCNGC	2 cut(s)	75, 220
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	117
BseRI	GAGGAG	2 cut(s)	29, 32
BseX3I	CGGCCG	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	28
BsnI	GGCC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	2 cut(s)	73, 218
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	73
BstZI	CGGCCG	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	112, 117
CaiI	CAGNNNCTG	1 cut(s)	24
CfoI	GCGC	1 cut(s)	73
CviAII	CATG	2 cut(s)	64, 157
CviJI	RGCY	5 cut(s)	13, 21, 76, 155, 221
CviKI_1	RGCY	5 cut(s)	13, 21, 76, 155, 221
DdeI	CTNAG	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	74
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	156
Eco52I	CGGCCG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	67, 160
FaiI	YATR	4 cut(s)	65, 158, 240, 259
FatI	CATG	2 cut(s)	63, 156
Fnu4HI	GCNGC	2 cut(s)	74, 219
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	74, 219
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	74, 219
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	67, 160
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	53, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	67, 160
HspAI	GCGC	1 cut(s)	71
LpnPI	CCDG	4 cut(s)	31, 73, 138, 212
MboII	GAAGA	7 cut(s)	37, 78, 81, 84, 87, 200, 219
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	6 cut(s)	32, 47, 50, 53, 136, 157
MspI	CCGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	156
NlaIII	CATG	2 cut(s)	67, 160
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	75, 220
PstNI	CAGNNNCTG	1 cut(s)	24
SatI	GCNGC	2 cut(s)	74, 219
SetI	ASST	3 cut(s)	15, 127, 147
SsiI	CCGC	2 cut(s)	73, 218
StyI	CCWWGG	1 cut(s)	156
TauI	GCSGC	2 cut(s)	76, 221
TscAI	CASTG	2 cut(s)	112, 117
TspRI	CASTG	2 cut(s)	112, 117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.