Rh6BG043800

Phytosulfokines

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003745
Physical Location & Seq
Forward (+)
7029685 .. 7030962
1278 bp
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UTR
Exon/CDS
Intron
Rh6BG043800.1

Sequence Viewer

Length: 261 bp
ATGTCGTCTTGCAAGCTCACCAACCTCTGCATCGTCGCCGCCCTCCTCCTCTTCCTCTCATTAACCTCCACAGCTCGGGAGATGCCTTCTTCTCCAGATGTTAGTACAATGAAAGTCCAACCCGAGGGGTTGAAGGATGCTCAAGTCGAAAAAGTGATGGCGGAAGAGAGCTGCGAGGGAGTTGGAGAAGAAGAGTGTCTGATGAGAAGAACTCTTGCTGCTCACATTGATTATATATATACACAGAAGAACAACCCTTGA

Protein Analysis

86

Amino Acids

9.47

Weight (kDa)

4.84

Isoelectric Point (pI)

63.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSK PF06404 18 - 86 2e-16 Phytosulfokine precursor protein (PSK)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 39, 161
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 75, 124
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 3 cut(s) 16, 74, 171
AluI AGCT 3 cut(s) 16, 74, 171
Ama87I CYCGRG 2 cut(s) 75, 122
ApeKI GCWGC 2 cut(s) 171, 218
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 2 cut(s) 75, 122
BbvI GCAGC 2 cut(s) 158, 205
BccI CCATC 1 cut(s) 151
BisI GCNGC 3 cut(s) 39, 172, 219
BlsI GCNGC 3 cut(s) 40, 173, 220
BmeT110I CYCGRG 2 cut(s) 75, 122
BmsI GCATC 3 cut(s) 39, 72, 127
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 124
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 75, 124
BseRI GAGGAG 2 cut(s) 35, 38
BseXI GCAGC 2 cut(s) 158, 205
BsiHKCI CYCGRG 2 cut(s) 75, 122
BslI CCNNNNNNNGG 2 cut(s) 75, 124
BsoBI CYCGRG 2 cut(s) 75, 122
BspACI CCGC 2 cut(s) 39, 161
BssECI CCNNGG 1 cut(s) 123
Bst6I CTCTTC 3 cut(s) 56, 159, 186
BstC8I GCNNGC 1 cut(s) 14
BstF5I GGATG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 158, 205
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 105
CviJI RGCY 3 cut(s) 16, 74, 171
CviKI_1 RGCY 3 cut(s) 16, 74, 171
CviQI GTAC 1 cut(s) 105
Eam1104I CTCTTC 3 cut(s) 56, 159, 186
EarI CTCTTC 3 cut(s) 56, 159, 186
EciI GGCGGA 1 cut(s) 176
Eco88I CYCGRG 2 cut(s) 75, 122
FaiI YATR 4 cut(s) 234, 236, 238, 240
Fnu4HI GCNGC 3 cut(s) 39, 172, 219
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 39, 172, 219
GluI GCNGC 3 cut(s) 39, 172, 219
GsuI CTGGAG 1 cut(s) 78
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 77, 95
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 96, 127
HpyCH4V TGCA 2 cut(s) 12, 30
LpnPI CCDG 1 cut(s) 108
Lsp1109I GCAGC 2 cut(s) 158, 205
LweI GCATC 3 cut(s) 39, 72, 127
MboII GAAGA 7 cut(s) 43, 81, 176, 200, 203, 219, 259
MmeI TCCRAC 2 cut(s) 142, 163
MnlI CCTC 8 cut(s) 35, 53, 56, 59, 65, 76, 118, 169
MseI TTAA 1 cut(s) 62
PkrI GCNGC 3 cut(s) 40, 173, 220
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 3 cut(s) 39, 172, 219
SetI ASST 5 cut(s) 18, 27, 68, 76, 173
SfaNI GCATC 3 cut(s) 39, 72, 127
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
SsiI CCGC 2 cut(s) 39, 161
TaqI TCGA 1 cut(s) 147
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 2 cut(s) 171, 218
TspDTI ATGAA 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.