Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000294.1

Orthogroup ID

OG0003745

Physical Location & Seq

Genomic Coordinates Reverse (-)

22558 .. 22949

Gene Structure 392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000294.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atggccaagttaaccgcccttttcaccatcgccgctctcctcctcctcctcagctctgagctaacctcagcggttcgcccggagcctgctttcaccaacagtgcgctcaaaactgcccaacaccaagatgtaggagcagatcagaacattaatgccgaggatggcgaggttagctgtgaaggagtgaacgaggaggagtgcctgatgcgaagaaccctggctgctcatgtggattatatatatactcagaagcacaacaagccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008283 GO:0009987 GO:0012505 GO:0030154 GO:0031012 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSK

Protein Analysis

88

Amino Acids

9.61

Weight (kDa)

4.98

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49780 AT5G65870
fragaria_vesca	FvH4_2g03340 FvH4_2g03370 FvH4_2g03370 FvH4_2g32750
malus_domestica	MD05G1105500.v1.1 MD08G1079100.v1.1 MD10G1110000.v1.1 MD15G1066300.v1.1
prunus_persica	Prupe.1G420000_v2.0.a1 Prupe.8G150200_v2.0.a1
pyrus_communis	pycom05g10250 pycom08g06550 pycom10g09530 pycom15g06250
rosa_chinensis	RchiOBHm_Chr6g0248481 RchiOBHm_Chr6g0309921
rosa_multiflora	Rmu_sc0000294.1_g000006 Rmu_sc0002553.1_g000013
rosa_roxburghii	Rroxscaffold_7G00159040 Rroxscaffold_7G00213260
rosa_rugosa	Rorug05G0531600.1 Rorug06G0375900
rosa_samantha	Rh6AG047500 Rh6AG489800 Rh6BG043800 Rh6BG499200 Rh6CG040500 Rh6CG504100 Rh6DG037000 Rh6DG490300
rosa_wichuraiana	Rw6G004120 Rw6G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	35
AciI	CCGC	3 cut(s)	15, 33, 71
AcoI	YGGCCR	1 cut(s)	3
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	3 cut(s)	54, 61, 174
AluI	AGCT	3 cut(s)	54, 61, 174
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	16, 85
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	2 cut(s)	50, 67
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	35, 155
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	33, 222
BlsI	GCNGC	2 cut(s)	34, 223
Bme1390I	CCNGG	2 cut(s)	80, 218
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	80, 218
BmsI	GCATC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu10I	CCTNAGC	2 cut(s)	50, 67
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	156, 216
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	156, 216
BseGI	GGATG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	48, 64, 81, 260
BseRI	GAGGAG	6 cut(s)	29, 32, 35, 38, 206, 209
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	80
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	3 cut(s)	15, 33, 71
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	49, 63, 80, 259
BspLI	GGNNCC	1 cut(s)	84
BsrBI	CCGCTC	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	156, 216
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	4 cut(s)	50, 57, 67, 246
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 259
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	78, 216
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	1 cut(s)	106
CviAII	CATG	2 cut(s)	227, 264
CviJI	RGCY	7 cut(s)	5, 54, 61, 85, 174, 221, 262
CviKI_1	RGCY	7 cut(s)	5, 54, 61, 85, 174, 221, 262
DdeI	CTNAG	4 cut(s)	50, 57, 67, 246
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	230, 267
FaiI	YATR	6 cut(s)	228, 237, 239, 241, 243, 265
FatI	CATG	2 cut(s)	226, 263
Fnu4HI	GCNGC	2 cut(s)	33, 222
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	33, 222
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	2 cut(s)	33, 222
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	230, 267
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HpaI	GTTAAC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	16, 85
Hpy166II	GTNNAC	2 cut(s)	12, 187
Hpy188I	TCNGA	3 cut(s)	58, 144, 249
Hpy8I	GTNNAC	2 cut(s)	12, 187
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 259
HpyF3I	CTNAG	4 cut(s)	50, 57, 67, 246
Hsp92II	CATG	2 cut(s)	230, 267
HspAI	GCGC	1 cut(s)	104
KspAI	GTTAAC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	82, 134
LpnPI	CCDG	5 cut(s)	93, 99, 203, 215, 230
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	195
MalI	GATC	1 cut(s)	141
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	9 cut(s)	50, 53, 56, 59, 76, 151, 160, 184, 187
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	11, 150
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	80, 218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	171, 259
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	230, 267
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	34, 223
PshBI	ATTAAT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	11, 150
SatI	GCNGC	2 cut(s)	33, 222
Sau3AI	GATC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	80, 218
SetI	ASST	5 cut(s)	56, 63, 68, 171, 176
SfaNI	GCATC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	126
SsiI	CCGC	3 cut(s)	15, 33, 71
StyD4I	CCNGG	2 cut(s)	78, 216
TaaI	ACNGT	1 cut(s)	101
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	11, 150
Tru9I	TTAA	2 cut(s)	11, 150
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	1 cut(s)	221
TspRI	CASTG	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.