Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Forward (+)

19473339 .. 19474606

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAAGCTGAGAATTTGATGAATCTTTCTCTTCTCCAACGCAGAAACGGCGCCGTTTCACAAACCCTAGATTTAGAGCTCGTGTCCGTCAACAAATCCTCCGAGGATCCTCTTCCATGTTACACTTCCCTCAAAGACATCCTCCCTTCCTCCTCCACCACCGTCGATTCCCCCGCCATATCCTTTGCTGTCGCCTCCGCTGTATCAGGTCCCACCATCACGATCCGCAATCGCCTTGTAAAGCAAGCTGCTTGCTCCTACCTTCAGCCTTCTACTCCAACTCCTTCCTCCAACCCTTCATTCCTCCGCCGTGTCTCCTCCTCCTTCATCCGCCTCGTCTCCGCCTTCTTTGATGCTCTCCTCCGCATCTTCCCATCTCCTCAGAAAATCTTTAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.45

Weight (kDa)

9.5

Isoelectric Point (pI)

68.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AciI	CCGC	7 cut(s)	174, 198, 226, 307, 331, 342, 364
AclWI	GGATC	3 cut(s)	101, 114, 217
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	3 cut(s)	8, 79, 248
AluI	AGCT	3 cut(s)	8, 79, 248
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	319, 343
AlwI	GGATC	3 cut(s)	101, 114, 217
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	2 cut(s)	224, 382
BceAI	ACGGC	3 cut(s)	38, 64, 294
BcoDI	GTCTC	2 cut(s)	319, 343
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	3 cut(s)	52, 108, 211
BmsI	GCATC	2 cut(s)	343, 375
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 265, 295
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	138, 327
BseMII	CTCAG	1 cut(s)	395
BseRI	GAGGAG	5 cut(s)	142, 307, 310, 350, 369
BseXI	GCAGC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	195
BsmAI	GTCTC	2 cut(s)	319, 343
BsmBI	CGTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	106, 222
BspACI	CCGC	7 cut(s)	174, 198, 226, 307, 331, 342, 364
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	52, 108, 211
BspPI	GGATC	3 cut(s)	101, 114, 217
BspT107I	GGYRCC	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	2 cut(s)	106, 222
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	36, 117
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	246, 253
BstDEI	CTNAG	3 cut(s)	9, 381, 399
BstF5I	GGATG	2 cut(s)	138, 327
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	109, 225
BstMAI	GTCTC	2 cut(s)	319, 343
BstMBI	GATC	2 cut(s)	106, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	138, 327
Cac8I	GCNNGC	2 cut(s)	246, 253
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	209
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	5 cut(s)	8, 79, 248, 268, 398
CviKI_1	RGCY	5 cut(s)	8, 79, 248, 268, 398
DdeI	CTNAG	3 cut(s)	9, 381, 399
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	2 cut(s)	108, 224
DpnII	GATC	2 cut(s)	106, 222
Eam1104I	CTCTTC	2 cut(s)	36, 117
EarI	CTCTTC	2 cut(s)	36, 117
EciI	GGCGGA	3 cut(s)	296, 320, 331
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	1 cut(s)	120
FaiI	YATR	2 cut(s)	118, 179
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	116
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	125, 314
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	54
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	22, 167
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	103, 384
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	7 cut(s)	156, 272, 279, 294, 306, 334, 355
HpyCH4III	ACNGT	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	3 cut(s)	9, 381, 399
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	120
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	106, 222
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	1 cut(s)	192
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	2 cut(s)	343, 375
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	108, 224
MboI	GATC	2 cut(s)	106, 222
MboII	GAAGA	3 cut(s)	23, 104, 361
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	13
Mly113I	GGCGCC	1 cut(s)	51
MmeI	TCCRAC	3 cut(s)	61, 302, 315
MspA1I	CMGCKG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	48
NarI	GGCGCC	1 cut(s)	51
NdeII	GATC	2 cut(s)	106, 222
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	3 cut(s)	52, 108, 211
PfeI	GAWTC	2 cut(s)	22, 167
PkrI	GCNGC	1 cut(s)	250
PluTI	GGCGCC	1 cut(s)	54
PpuMI	RGGWCCY	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	52, 108, 211
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	81
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	106, 222
Sau96I	GGNCC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	5 cut(s)	10, 81, 211, 250, 264
SfaNI	GCATC	2 cut(s)	343, 375
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	7 cut(s)	174, 198, 226, 307, 331, 342, 364
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	22, 167
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	35, 288, 316
TspGWI	ACGGA	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	13
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.