Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Forward (+)

14535632 .. 14536153

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAATCCCCTTCCATGGAGATCTCCGCCGTTAAAAACCCTAAGCCCAATTCGCATTCCCATTCCCACTCCCATTCCCCGACGTTTCTCCTCCACAACGGCTTCAGCGACGAGGTCGATGTGTCTGACATCGAGATGATCACGATCCAGACCGTCACCTACACCAGCCTCAGGGACCTCCTCCCGGCGTCGACGCAGCCATCGATCATGTCACCGATTCACAATTCCAGCTGGCACGACGAGATTCCGATCAAGAACCCGCTCGTCAAGCACGCTGCACTGGCGTACCTCCAGCCGATGTCCTCGCCGCCAGAGGTCGGCGATAAGGGATTATTCCGGATGATCCGGGAGAAGTGCAACTGTGAGTTCGGGTGTCTCGGTTGGTTCGGCGACGTCGTTTTCAAGACAGTTAGGGACGTGTTTGGTGGCGTTTGTGGTTGTACGAATAGTTTTGGCGAGATTGGGGATGAGGACGAGGAGGAGGAGGAGGAGGAGGTTGAGGAGTGCTTGAAAGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.23

Weight (kDa)

4.63

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	191
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	3 cut(s)	27, 260, 308
AclWI	GGATC	2 cut(s)	139, 337
AcuI	CTGAAG	1 cut(s)	88
AcyI	GRCGYC	2 cut(s)	188, 393
AfaI	GTAC	2 cut(s)	287, 442
AfiI	CCNNNNNNNGG	4 cut(s)	16, 171, 184, 317
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	403, 511
AjiI	CACGTC	1 cut(s)	418
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	2 cut(s)	139, 337
Aor13HI	TCCGGA	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	196, 275
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	2 cut(s)	185, 347
AsuHPI	GGTGA	2 cut(s)	148, 204
AvaII	GGWCC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BbvI	GCAGC	2 cut(s)	208, 262
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	2 cut(s)	14, 115
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	185, 347
BcoDI	GTCTC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	3 cut(s)	197, 276, 308
BlsI	GCNGC	3 cut(s)	198, 277, 309
Bme1390I	CCNGG	2 cut(s)	185, 347
Bme18I	GGWCC	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	185, 347
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	42
BpuMI	CCSGG	2 cut(s)	185, 347
Bsa29I	ATCGAT	1 cut(s)	203
BsaBI	GATNNNNATC	2 cut(s)	143, 248
BsaHI	GRCGYC	2 cut(s)	188, 393
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 171, 184, 317
Bse1I	ACTGG	1 cut(s)	285
Bse21I	CCTNAGG	1 cut(s)	170
Bse8I	GATNNNNATC	2 cut(s)	143, 248
BseAI	TCCGGA	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	345, 472
BseJI	GATNNNNATC	2 cut(s)	143, 248
BseLI	CCNNNNNNNGG	4 cut(s)	16, 171, 184, 317
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	9 cut(s)	80, 170, 491, 494, 497, 500, 503, 506, 515
BseXI	GCAGC	2 cut(s)	208, 262
BsgI	GTGCAG	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	185, 337, 346
BslFI	GGGAC	2 cut(s)	188, 428
BslI	CCNNNNNNNGG	4 cut(s)	16, 171, 184, 317
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	188, 428
BsmI	GAATGC	1 cut(s)	55
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	21, 138, 144, 204, 249, 342
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	3 cut(s)	27, 260, 308
BspCNI	CTCAG	1 cut(s)	183
BspDI	ATCGAT	1 cut(s)	203
BspEI	TCCGGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	139, 337
BsrBI	CCGCTC	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	6 cut(s)	21, 138, 144, 204, 249, 342
BssNI	GRCGYC	2 cut(s)	188, 393
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	3 cut(s)	154, 362, 409
BstACI	GRCGYC	2 cut(s)	188, 393
BstC8I	GCNNGC	2 cut(s)	233, 273
BstDEI	CTNAG	2 cut(s)	42, 170
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	345, 472
BstKTI	GATC	6 cut(s)	24, 141, 147, 207, 252, 345
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	6 cut(s)	21, 138, 144, 204, 249, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 268, 281
BstSCI	CCNGG	2 cut(s)	183, 345
BstV1I	GCAGC	2 cut(s)	208, 262
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	203
Bsu36I	CCTNAGG	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	345, 472
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	233, 273
Cfr13I	GGNCC	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	203
CseI	GACGC	2 cut(s)	177, 202
Csp6I	GTAC	2 cut(s)	286, 441
CviAII	CATG	2 cut(s)	16, 208
CviJI	RGCY	6 cut(s)	46, 102, 168, 199, 231, 295
CviKI_1	RGCY	6 cut(s)	46, 102, 168, 199, 231, 295
CviQI	GTAC	2 cut(s)	286, 441
DdeI	CTNAG	2 cut(s)	42, 170
DpnI	GATC	6 cut(s)	23, 140, 146, 206, 251, 344
DpnII	GATC	6 cut(s)	21, 138, 144, 204, 249, 342
EciI	GGCGGA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	19, 211
FaiI	YATR	2 cut(s)	17, 209
FaqI	GGGAC	2 cut(s)	188, 428
FatI	CATG	2 cut(s)	15, 207
FauI	CCCGC	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	197, 276, 308
FokI	GGATG	2 cut(s)	352, 479
Fsp4HI	GCNGC	3 cut(s)	197, 276, 308
GluI	GCNGC	3 cut(s)	197, 276, 308
GsuI	CTGGAG	1 cut(s)	275
HapII	CCGG	3 cut(s)	185, 337, 346
HgaI	GACGC	2 cut(s)	177, 202
Hin1I	GRCGYC	2 cut(s)	188, 393
Hin1II	CATG	2 cut(s)	19, 211
HincII	GTYRAC	2 cut(s)	192, 517
HindII	GTYRAC	2 cut(s)	192, 517
HinfI	GANTC	3 cut(s)	5, 217, 244
HpaII	CCGG	3 cut(s)	185, 337, 346
HphI	GGTGA	2 cut(s)	148, 204
Hpy166II	GTNNAC	2 cut(s)	192, 517
Hpy188I	TCNGA	2 cut(s)	127, 249
Hpy188III	TCNNGA	6 cut(s)	133, 142, 148, 253, 337, 403
Hpy8I	GTNNAC	2 cut(s)	192, 517
Hpy99I	CGWCG	7 cut(s)	85, 113, 193, 196, 242, 395, 398
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	3 cut(s)	154, 362, 409
HpyCH4IV	ACGT	3 cut(s)	83, 393, 417
HpyCH4V	TGCA	2 cut(s)	278, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 268, 281
HpyF3I	CTNAG	2 cut(s)	42, 170
HpySE526I	ACGT	3 cut(s)	83, 393, 417
Hsp92I	GRCGYC	2 cut(s)	188, 393
Hsp92II	CATG	2 cut(s)	19, 211
Kpn2I	TCCGGA	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	21, 138, 144, 204, 249, 342
Lsp1109I	GCAGC	2 cut(s)	208, 262
MaeII	ACGT	3 cut(s)	83, 393, 417
MaeIII	GTNAC	2 cut(s)	154, 210
MalI	GATC	6 cut(s)	23, 140, 146, 206, 251, 344
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	6 cut(s)	21, 138, 144, 204, 249, 342
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	2 cut(s)	49, 223
MroI	TCCGGA	1 cut(s)	336
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	3 cut(s)	185, 337, 346
MspR9I	CCNGG	2 cut(s)	185, 347
Mva1269I	GAATGC	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	52, 268, 281
NciI	CCSGG	2 cut(s)	185, 347
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	6 cut(s)	21, 138, 144, 204, 249, 342
NlaIII	CATG	2 cut(s)	19, 211
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	2 cut(s)	154, 210
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 200, 393
PctI	GAATGC	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	5, 217, 244
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	198, 277, 309
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	21
PsyI	GACNNNGTC	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	231
RsaI	GTAC	2 cut(s)	287, 442
RsaNI	GTAC	2 cut(s)	286, 441
RseI	CAYNNNNRTG	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	3 cut(s)	197, 276, 308
Sau3AI	GATC	6 cut(s)	21, 138, 144, 204, 249, 342
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	185, 347
SgrDI	CGTCGACG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	49, 223
SsiI	CCGC	3 cut(s)	27, 260, 308
StyD4I	CCNGG	2 cut(s)	183, 345
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	3 cut(s)	154, 362, 409
TaiI	ACGT	3 cut(s)	86, 396, 420
TaqI	TCGA	4 cut(s)	117, 132, 191, 203
TasI	AATT	2 cut(s)	49, 223
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	3 cut(s)	5, 217, 244
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	2 cut(s)	154, 210
TseI	GCWGC	2 cut(s)	196, 275
Tsp45I	GTSAC	2 cut(s)	154, 210
TspRI	CASTG	1 cut(s)	285
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	191
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.