Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Reverse (-)

19863265 .. 19863807

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G018010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGACGAGGACGACTCCACCGCTCTCCCTGCTCCGCCGCGCCTGGTGGGCCCACTCCACCCCTCATGGAAGCTCCGCCGCCGCAACTCCATCTCCACCTCCGTCGTCGTCCCCACCAAGCTCAGCCACCTCTCCACCACTCCCACCACTCCCACCAATAATATGCCCCGCCACAGCTGCAGCTTCCCACCCCAAAACGGCGCCCTGACGCCGCGCCATCGGCCGCCGCAGCTCGACCTGGAGCTTCTCTCCGAGTCCTACACCTCCCTCAAGGACCTCCTCCCCTCCTCCTCCTTCGCCGCCGTCCAGTCCCCGACGCCCAACTCCGCCACCAACGAGATCTCCATCCGCAACCGCCTCGTCAAGCAGGCCGCCTGGGCCTACCTCCAGCCCATGTCCTCCACCTCCGGCCCCTCCGGCCCACACTTGCTCCGCCGCCTCTGGCTCAAGTGCACCCCCTGCCTCTCCTTCCTCACCCACCGCCTCCTCCCCTTTCTCTCCCGAACCCTCCATCGCTTACTCCCCTGCTTCCAACTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.0

Weight (kDa)

10.36

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	2 cut(s)	40, 214
AcoI	YGGCCR	1 cut(s)	221
AcyI	GRCGYC	3 cut(s)	201, 209, 317
AfiI	CCNNNNNNNGG	1 cut(s)	197
AjnI	CCWGG	3 cut(s)	42, 237, 374
AluBI	AGCT	6 cut(s)	73, 121, 177, 183, 232, 244
AluI	AGCT	6 cut(s)	73, 121, 177, 183, 232, 244
Alw21I	GWGCWC	1 cut(s)	455
Alw44I	GTGCAC	1 cut(s)	451
AoxI	GGCC	6 cut(s)	49, 221, 369, 378, 409, 418
ApaI	GGGCCC	1 cut(s)	53
ApaLI	GTGCAC	1 cut(s)	451
ApeKI	GCWGC	3 cut(s)	177, 180, 229
AspLEI	GCGC	3 cut(s)	42, 203, 216
AspS9I	GGNCC	6 cut(s)	49, 50, 274, 378, 410, 419
AsuHPI	GGTGA	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	2 cut(s)	53, 455
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	164, 192, 241
BccI	CCATC	4 cut(s)	98, 225, 353, 519
BceAI	ACGGC	2 cut(s)	214, 287
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	3 cut(s)	44, 239, 376
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	204
BglI	GCCNNNNNGGC	3 cut(s)	48, 377, 417
BglII	AGATCT	1 cut(s)	339
BlpI	GCTNAGC	1 cut(s)	122
Bme1390I	CCNGG	3 cut(s)	44, 239, 376
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	6 cut(s)	49, 50, 274, 378, 410, 419
BmiI	GGNNCC	3 cut(s)	51, 202, 412
BmrFI	CCNGG	3 cut(s)	44, 239, 376
BplI	GAGNNNNNCTC	3 cut(s)	31, 233, 265
BpmI	CTGGAG	2 cut(s)	260, 371
Bpu1102I	GCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	254, 431
BsaBI	GATNNNNATC	1 cut(s)	344
BsaHI	GRCGYC	3 cut(s)	201, 209, 317
BsaJI	CCNNGG	1 cut(s)	375
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 326, 356, 414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	3 cut(s)	44, 239, 376
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	345
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	4 cut(s)	269, 277, 280, 476
BseSI	GKGCMC	2 cut(s)	53, 455
BseX3I	CGGCCG	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	164, 192, 241
Bsh1236I	CGCG	2 cut(s)	40, 214
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	6 cut(s)	51, 223, 371, 380, 411, 420
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	408, 417
BslFI	GGGAC	2 cut(s)	95, 295
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	95, 295
BsnI	GGCC	6 cut(s)	51, 223, 371, 380, 411, 420
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	53, 455
Bsp143I	GATC	1 cut(s)	339
Bsp1720I	GCTNAGC	1 cut(s)	122
BspANI	GGCC	6 cut(s)	51, 223, 371, 380, 411, 420
BspCNI	CTCAG	1 cut(s)	135
BspFNI	CGCG	2 cut(s)	40, 214
BspLI	GGNNCC	3 cut(s)	51, 202, 412
BspMAI	CTGCAG	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	3 cut(s)	201, 209, 317
Bst2UI	CCWGG	3 cut(s)	44, 239, 376
BstACI	GRCGYC	3 cut(s)	201, 209, 317
BstAPI	GCANNNNNTGC	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	2 cut(s)	40, 214
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	42, 203, 216
BstKTI	GATC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	339
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 48, 177, 220, 229, 377, 417, 459
BstNI	CCWGG	3 cut(s)	44, 239, 376
BstSCI	CCNGG	3 cut(s)	42, 237, 374
BstSFI	CTRYAG	1 cut(s)	178
BstSLI	GKGCMC	2 cut(s)	53, 455
BstUI	CGCG	2 cut(s)	40, 214
BstV1I	GCAGC	3 cut(s)	164, 192, 241
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BstZI	CGGCCG	1 cut(s)	221
BsuRI	GGCC	6 cut(s)	51, 223, 371, 380, 411, 420
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	3 cut(s)	42, 203, 216
Cfr13I	GGNCC	6 cut(s)	49, 50, 274, 378, 410, 419
CseI	GACGC	2 cut(s)	217, 325
CviAII	CATG	2 cut(s)	66, 394
DdeI	CTNAG	1 cut(s)	122
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	221
EagI	CGGCCG	1 cut(s)	221
EciI	GGCGGA	4 cut(s)	24, 65, 316, 422
EclXI	CGGCCG	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	274
Eco52I	CGGCCG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	3 cut(s)	42, 237, 374
EcoT38I	GRGCYC	1 cut(s)	53
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FaeI	CATG	2 cut(s)	69, 397
FaiI	YATR	3 cut(s)	67, 164, 395
FaqI	GGGAC	2 cut(s)	95, 295
FatI	CATG	2 cut(s)	65, 393
FauI	CCCGC	1 cut(s)	176
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	53
GlaI	GCGC	3 cut(s)	41, 202, 215
GsuI	CTGGAG	2 cut(s)	260, 371
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	6 cut(s)	51, 223, 371, 380, 411, 420
HapII	CCGG	2 cut(s)	408, 417
HgaI	GACGC	2 cut(s)	217, 325
HhaI	GCGC	3 cut(s)	42, 203, 216
Hin1I	GRCGYC	3 cut(s)	201, 209, 317
Hin1II	CATG	2 cut(s)	69, 397
Hin6I	GCGC	3 cut(s)	40, 201, 214
HinP1I	GCGC	3 cut(s)	40, 201, 214
HinfI	GANTC	2 cut(s)	14, 254
HpaII	CCGG	2 cut(s)	408, 417
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	3 cut(s)	107, 110, 319
HpyAV	CCTTC	2 cut(s)	304, 478
HpyCH4V	TGCA	2 cut(s)	180, 453
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 48, 177, 220, 229, 377, 417, 459
HpyF3I	CTNAG	1 cut(s)	122
Hsp92I	GRCGYC	3 cut(s)	201, 209, 317
Hsp92II	CATG	2 cut(s)	69, 397
HspAI	GCGC	3 cut(s)	40, 201, 214
KasI	GGCGCC	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	4 cut(s)	37, 78, 241, 435
Lsp1109I	GCAGC	3 cut(s)	164, 192, 241
MalI	GATC	1 cut(s)	341
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	1 cut(s)	339
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	53, 455
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	8, 263
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	408, 417
MspR9I	CCNGG	3 cut(s)	44, 239, 376
MvaI	CCWGG	3 cut(s)	44, 239, 376
MvnI	CGCG	2 cut(s)	40, 214
MwoI	GCNNNNNNNGC	8 cut(s)	29, 48, 177, 220, 229, 377, 417, 459
NarI	GGCGCC	1 cut(s)	201
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	2 cut(s)	69, 397
NlaIV	GGNNCC	3 cut(s)	51, 202, 412
PleI	GAGTC	2 cut(s)	8, 262
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	2 cut(s)	8, 262
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	3 cut(s)	42, 237, 374
PspGI	CCWGG	3 cut(s)	42, 237, 374
PspN4I	GGNNCC	3 cut(s)	51, 202, 412
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	6 cut(s)	49, 50, 274, 378, 410, 419
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	6 cut(s)	49, 50, 274, 378, 410, 419
SchI	GAGTC	2 cut(s)	8, 263
ScrFI	CCNGG	3 cut(s)	44, 239, 376
SduI	GDGCHC	2 cut(s)	53, 455
SfcI	CTRYAG	1 cut(s)	178
SfiI	GGCCNNNNNGGCC	2 cut(s)	377, 417
SfoI	GGCGCC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	269, 446
SmoI	CTYRAG	2 cut(s)	269, 446
SspDI	GGCGCC	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	42, 237, 374
TaqI	TCGA	1 cut(s)	234
TauI	GCSGC	9 cut(s)	40, 81, 84, 214, 226, 229, 302, 374, 438
TseI	GCWGC	3 cut(s)	177, 180, 229
TspGWI	ACGGA	1 cut(s)	91
VneI	GTGCAC	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.