Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Forward (+)

13764615 .. 13765565

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAGACCAAGAATCCGAGTCTCAACAATGTCCCAAACTCGTTCCTCTCCCAAAACGGCTTCCCCTCCCCCGTCGACTTCTCCGACATTGAGATGATCACTCTCCAGGCCGTCACCTACACCAGCCTCCGCGACCTCCTCCCTTCCTCGCCGCCGACCATCGCCTCTCCGACGCACAACTCCAGCTGGCACGAGATTCCGATCAAGAACCCGCTCGTCAAGCACGCCGCCCTCGCCTACCTCCAGCCAATGTCCACGCCGCCGGAGGTCGGCGGCAAGGGGATTCTCCGGACCATCCGGGACAAGTGCGGCTGCTCCGACGGGATCGGATGCGTGGATTGGTTGCGCGACGTCTTTTGGAAGTCCGTAAAGGAGGCCTTTGGGGACGGCCGGAGGGATTGGGAGGAGGAGTACGACGACGACGACGACGACGACGATGAGGATGACGTCAAGGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.08

Weight (kDa)

4.36

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	354, 450
AccBSI	CCGCTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	2 cut(s)	132, 348
AccIII	TCCGGA	1 cut(s)	288
AciI	CCGC	7 cut(s)	130, 152, 212, 228, 260, 273, 309
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	388
AcyI	GRCGYC	2 cut(s)	351, 447
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	3 cut(s)	108, 375, 388
ApeKI	GCWGC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	2 cut(s)	167, 302
BceAI	ACGGC	3 cut(s)	73, 95, 403
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	26
BisI	GCNGC	6 cut(s)	152, 228, 260, 274, 310, 313
BlsI	GCNGC	6 cut(s)	153, 229, 261, 275, 311, 314
Bme1390I	CCNGG	2 cut(s)	107, 299
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	107, 299
BmsI	GCATC	1 cut(s)	320
BpmI	CTGGAG	3 cut(s)	89, 166, 227
BpuMI	CCSGG	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	200
BsaHI	GRCGYC	2 cut(s)	351, 447
BsaWI	WCCGGW	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	200
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	107
BseGI	GGATG	3 cut(s)	294, 335, 448
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseRI	GAGGAG	3 cut(s)	128, 419, 422
BseX3I	CGGCCG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	299
Bsh1236I	CGCG	2 cut(s)	132, 348
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	3 cut(s)	110, 377, 390
BsiEI	CGRYCG	1 cut(s)	391
BsiSI	CCGG	4 cut(s)	263, 289, 298, 391
BslFI	GGGAC	3 cut(s)	17, 314, 398
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	3 cut(s)	17, 314, 398
BsnI	GGCC	3 cut(s)	110, 377, 390
Bsp13I	TCCGGA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	96, 201, 324
BspACI	CCGC	7 cut(s)	130, 152, 212, 228, 260, 273, 309
BspANI	GGCC	3 cut(s)	110, 377, 390
BspEI	TCCGGA	1 cut(s)	288
BspFNI	CGCG	2 cut(s)	132, 348
BspPI	GGATC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	214
BssMI	GATC	3 cut(s)	96, 201, 324
BssNI	GRCGYC	2 cut(s)	351, 447
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	107
BstACI	GRCGYC	2 cut(s)	351, 447
BstC8I	GCNNGC	2 cut(s)	188, 225
BstF5I	GGATG	3 cut(s)	294, 335, 448
BstFNI	CGCG	2 cut(s)	132, 348
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	99, 204, 327
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	3 cut(s)	96, 201, 324
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 233
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	105, 297
BstUI	CGCG	2 cut(s)	132, 348
BstV1I	GCAGC	1 cut(s)	299
BstZI	CGGCCG	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	110, 377, 390
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	294, 335, 448
Cac8I	GCNNGC	2 cut(s)	188, 225
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	291
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	412
CviJI	RGCY	8 cut(s)	60, 110, 126, 186, 247, 312, 377, 390
CviKI_1	RGCY	8 cut(s)	60, 110, 126, 186, 247, 312, 377, 390
CviQI	GTAC	1 cut(s)	412
DpnI	GATC	3 cut(s)	98, 203, 326
DpnII	GATC	3 cut(s)	96, 201, 324
EaeI	YGGCCR	1 cut(s)	388
EagI	CGGCCG	1 cut(s)	388
EclXI	CGGCCG	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	291
Eco52I	CGGCCG	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	105
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	3 cut(s)	17, 314, 398
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	6 cut(s)	152, 228, 260, 274, 310, 313
FokI	GGATG	3 cut(s)	281, 342, 455
Fsp4HI	GCNGC	6 cut(s)	152, 228, 260, 274, 310, 313
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	6 cut(s)	152, 228, 260, 274, 310, 313
GsuI	CTGGAG	3 cut(s)	89, 166, 227
HaeIII	GGCC	3 cut(s)	110, 377, 390
HapII	CCGG	4 cut(s)	263, 289, 298, 391
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	2 cut(s)	351, 447
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	2 cut(s)	76, 457
HindII	GTYRAC	2 cut(s)	76, 457
HinfI	GANTC	4 cut(s)	13, 19, 196, 283
HpaII	CCGG	4 cut(s)	263, 289, 298, 391
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	76, 255, 457
Hpy188I	TCNGA	6 cut(s)	18, 85, 171, 201, 319, 329
Hpy188III	TCNNGA	2 cut(s)	205, 289
Hpy8I	GTNNAC	3 cut(s)	76, 255, 457
HpyAV	CCTTC	1 cut(s)	153
HpyCH4IV	ACGT	2 cut(s)	351, 447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 233
HpySE526I	ACGT	2 cut(s)	351, 447
Hsp92I	GRCGYC	2 cut(s)	351, 447
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	96, 201, 324
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	320
MaeII	ACGT	2 cut(s)	351, 447
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	3 cut(s)	98, 203, 326
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	3 cut(s)	96, 201, 324
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	3 cut(s)	108, 194, 342
MroI	TCCGGA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	4 cut(s)	263, 289, 298, 391
MspR9I	CCNGG	2 cut(s)	107, 299
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	132, 348
MwoI	GCNNNNNNNGC	2 cut(s)	220, 233
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	96, 201, 324
NmuCI	GTSAC	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	6 cut(s)	81, 420, 423, 426, 429, 432
PfeI	GAWTC	3 cut(s)	13, 196, 283
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	6 cut(s)	153, 229, 261, 275, 311, 314
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	291
PvuII	CAGCTG	1 cut(s)	186
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	74
SatI	GCNGC	6 cut(s)	152, 228, 260, 274, 310, 313
Sau3AI	GATC	3 cut(s)	96, 201, 324
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	107, 299
SetI	ASST	8 cut(s)	119, 138, 188, 243, 270, 354, 450, 456
SfaNI	GCATC	1 cut(s)	320
SinI	GGWCC	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	92
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	7 cut(s)	130, 152, 212, 228, 260, 273, 309
StuI	AGGCCT	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	105, 297
TaiI	ACGT	2 cut(s)	354, 450
TaqI	TCGA	1 cut(s)	75
TauI	GCSGC	5 cut(s)	154, 230, 262, 276, 312
TfiI	GAWTC	3 cut(s)	13, 196, 283
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	112
TspGWI	ACGGA	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	75
ZraI	GACGTC	2 cut(s)	352, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.