Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Forward (+)

40919763 .. 40921004

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGACCTCCTTGATTAAGAGTTCGAGTCTCAACAATGTCCCCAATTCCCACTCCCCCACCTTCCTCTCCCACAACGGCTTCGCCTCCCCGCAGCTCGACGTCTCCGACATAGAGATGATCGCCATACAGACCGTCACCTACACCAGCCTCAAGGACCTGTTACCGGCCTACCCGCCGACGATCGGCTCGCCGACGCACAACTCCAGCTGGCACGAAATTCCGATCAAGAACCCGCTCGTCAAGCACGCCGCTCTCGCCTACCTCCAGCCAATGTCGACGCGGCCCGAGGTCGGCGGCAAGGGGATAATCCGGACGGTCAGGGACAAGTGCGGGTGTACGGACGGGATCGGATGCCTGGACTGGCTGCGCGACGTCGTTTGGAATTCGGTTAGGGAGGCGTTTGGGGAGGATGGCCGGAGGGAGGGGAATTGGGATGAGGACGATGATGACGACGACGATGAAGATGATTACGTCAAGGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.97

Weight (kDa)

4.54

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	105, 378
AccBSI	CCGCTC	2 cut(s)	238, 254
AccI	GTMKAC	1 cut(s)	278
AccII	CGCG	2 cut(s)	283, 372
AccIII	TCCGGA	1 cut(s)	312
AciI	CCGC	7 cut(s)	92, 176, 236, 252, 283, 297, 333
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	219, 385
AcyI	GRCGYC	2 cut(s)	102, 375
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	4 cut(s)	166, 185, 293, 424
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	2 cut(s)	97, 210
AluI	AGCT	2 cut(s)	97, 210
Alw26I	GTCTC	2 cut(s)	35, 109
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	312
AoxI	GGCC	3 cut(s)	168, 284, 415
ApeKI	GCWGC	2 cut(s)	94, 367
ApoI	RAATTY	2 cut(s)	219, 385
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	157, 285
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	106, 354
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	35, 109
BisI	GCNGC	5 cut(s)	95, 252, 284, 298, 368
BlsI	GCNGC	5 cut(s)	96, 253, 285, 299, 369
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	157, 285
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	344
BpmI	CTGGAG	2 cut(s)	190, 251
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	2 cut(s)	102, 375
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 185, 293, 424
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	368
BseAI	TCCGGA	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	359, 418, 442
BseLI	CCNNNNNNNGG	4 cut(s)	166, 185, 293, 424
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	106, 354
Bsh1236I	CGCG	2 cut(s)	283, 372
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	170, 286, 417
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	167, 313, 418
BslFI	GGGAC	2 cut(s)	26, 338
BslI	CCNNNNNNNGG	4 cut(s)	166, 185, 293, 424
BsmAI	GTCTC	2 cut(s)	35, 109
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	26, 338
BsnI	GGCC	3 cut(s)	170, 286, 417
BsoBI	CYCGRG	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	312
Bsp143I	GATC	4 cut(s)	120, 183, 225, 348
BspACI	CCGC	7 cut(s)	92, 176, 236, 252, 283, 297, 333
BspANI	GGCC	3 cut(s)	170, 286, 417
BspEI	TCCGGA	1 cut(s)	312
BspFNI	CGCG	2 cut(s)	283, 372
BspPI	GGATC	1 cut(s)	356
BsrBI	CCGCTC	2 cut(s)	238, 254
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	4 cut(s)	120, 183, 225, 348
BssNI	GRCGYC	2 cut(s)	102, 375
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	136, 319
BstACI	GRCGYC	2 cut(s)	102, 375
BstC8I	GCNNGC	3 cut(s)	191, 212, 249
BstF5I	GGATG	3 cut(s)	359, 418, 442
BstFNI	CGCG	2 cut(s)	283, 372
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	4 cut(s)	123, 186, 228, 351
BstMAI	GTCTC	2 cut(s)	35, 109
BstMBI	GATC	4 cut(s)	120, 183, 225, 348
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 257
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	2 cut(s)	283, 372
BstV1I	GCAGC	2 cut(s)	106, 354
BsuRI	GGCC	3 cut(s)	170, 286, 417
BtsCI	GGATG	3 cut(s)	359, 418, 442
Cac8I	GCNNGC	3 cut(s)	191, 212, 249
CfoI	GCGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	157, 285
CseI	GACGC	2 cut(s)	205, 289
Csp6I	GTAC	1 cut(s)	339
CviQI	GTAC	1 cut(s)	339
DpnI	GATC	4 cut(s)	122, 185, 227, 350
DpnII	GATC	4 cut(s)	120, 183, 225, 348
EaeI	YGGCCR	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	109
FaiI	YATR	2 cut(s)	113, 128
FaqI	GGGAC	2 cut(s)	26, 338
FauI	CCCGC	4 cut(s)	99, 183, 243, 326
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	5 cut(s)	95, 252, 284, 298, 368
FokI	GGATG	3 cut(s)	366, 425, 449
Fsp4HI	GCNGC	5 cut(s)	95, 252, 284, 298, 368
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	5 cut(s)	95, 252, 284, 298, 368
GsuI	CTGGAG	2 cut(s)	190, 251
HaeIII	GGCC	3 cut(s)	170, 286, 417
HapII	CCGG	3 cut(s)	167, 313, 418
HgaI	GACGC	2 cut(s)	205, 289
HhaI	GCGC	1 cut(s)	372
Hin1I	GRCGYC	2 cut(s)	102, 375
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	2 cut(s)	279, 484
HindII	GTYRAC	2 cut(s)	279, 484
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	3 cut(s)	167, 313, 418
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	3 cut(s)	279, 339, 484
Hpy188I	TCNGA	3 cut(s)	109, 225, 353
Hpy188III	TCNNGA	2 cut(s)	229, 313
Hpy8I	GTNNAC	3 cut(s)	279, 339, 484
Hpy99I	CGWCG	8 cut(s)	104, 184, 199, 283, 377, 380, 458, 461
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	136, 319
HpyCH4IV	ACGT	3 cut(s)	102, 375, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 257
HpySE526I	ACGT	3 cut(s)	102, 375, 474
Hsp92I	GRCGYC	2 cut(s)	102, 375
HspAI	GCGC	1 cut(s)	370
Kpn2I	TCCGGA	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	120, 183, 225, 348
Lsp1109I	GCAGC	2 cut(s)	106, 354
LweI	GCATC	1 cut(s)	344
MaeII	ACGT	3 cut(s)	102, 375, 474
MaeIII	GTNAC	2 cut(s)	136, 162
MalI	GATC	4 cut(s)	122, 185, 227, 350
MbiI	CCGCTC	2 cut(s)	238, 254
MboI	GATC	4 cut(s)	120, 183, 225, 348
MboII	GAAGA	1 cut(s)	476
MluCI	AATT	4 cut(s)	46, 219, 385, 430
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	132
MroI	TCCGGA	1 cut(s)	312
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	3 cut(s)	167, 313, 418
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	2 cut(s)	283, 372
MwoI	GCNNNNNNNGC	2 cut(s)	244, 257
NdeII	GATC	4 cut(s)	120, 183, 225, 348
NmuCI	GTSAC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 450
PkrI	GCNGC	5 cut(s)	96, 253, 285, 299, 369
Ple19I	CGATCG	1 cut(s)	186
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	157, 285
PspPPI	RGGWCCY	1 cut(s)	157
PvuI	CGATCG	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	5 cut(s)	95, 252, 284, 298, 368
Sau3AI	GATC	4 cut(s)	120, 183, 225, 348
Sau96I	GGNCC	2 cut(s)	157, 285
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	359
SfaNI	GCATC	1 cut(s)	344
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	46, 219, 385, 430
SsiI	CCGC	7 cut(s)	92, 176, 236, 252, 283, 297, 333
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	136, 319
TaiI	ACGT	3 cut(s)	105, 378, 477
TaqI	TCGA	3 cut(s)	26, 99, 278
TasI	AATT	4 cut(s)	46, 219, 385, 430
TauI	GCSGC	3 cut(s)	254, 286, 300
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	94, 367
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	219, 385
XmiI	GTMKAC	1 cut(s)	278
ZraI	GACGTC	2 cut(s)	103, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.