Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Reverse (-)

2888415 .. 2888966

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGACGATTCAACCGTACTCAGCCCACACCCGGCGACCCCACTGCCCTCGTCAGGGAAGCTCTGCCGCAGAAACTCTATCTGCACATCCGTGGTGGTCCCCGCCAAGCTCAGCCTGCTCTCCGCCACCACCACTCCTACCTCAACTACCAAGCTCCGGCGCCTCCGCAACCCCAGCCTCCCAGCCCAAAACGGCGGCGTGTCGGGCCCAGAGCCACTCCAACTGGACCTGGAGCTCCTCTCCTTCAAGAGCTCCAAATCCTACACTTCTCTCAAAGACCTGCTCCCCTCCTCCGCCGCCGTGAATTCCCCCACCGCTGCCTCCGCCAACAACTCCGGCTACGAAATCTCCATTCGCAACCGCCTCGTTAAGCAGGCCGCCTGGGCCTACCTCCAGCCCATGTCCTCCACCTCCGGCCCATCTGGCCCAAACTTCCTCCGCCGCCTCTGCCTCAAGCTCTCCCCCTGCCTCTCTTTCTTCACCCACTGCGTCGTCCCCTTCCTCTCCCAAGCCCTCCGCCGCACACTCCGCTGCATCGGACTCGCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

19.54

Weight (kDa)

10.12

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	304
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	4 cut(s)	31, 53, 54, 156
AgsI	TTSAA	2 cut(s)	12, 247
AjnI	CCWGG	2 cut(s)	228, 380
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	6 cut(s)	61, 109, 154, 235, 252, 457
AluI	AGCT	6 cut(s)	61, 109, 154, 235, 252, 457
Alw21I	GWGCWC	2 cut(s)	237, 254
AoxI	GGCC	5 cut(s)	205, 375, 384, 415, 424
ApaI	GGGCCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	317, 531
ApoI	RAATTY	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	7 cut(s)	97, 205, 206, 226, 384, 416, 425
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	2 cut(s)	97, 226
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	159
BanII	GRGCYC	3 cut(s)	209, 237, 254
Bbv12I	GWGCWC	2 cut(s)	237, 254
BbvI	GCAGC	2 cut(s)	304, 518
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	2 cut(s)	208, 284
BcgI	CGANNNNNNTGC	5 cut(s)	25, 59, 346, 380, 523
BciT130I	CCWGG	2 cut(s)	230, 382
BcnI	CCSGG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	288
BglI	GCCNNNNNGGC	2 cut(s)	383, 423
BisI	GCNGC	8 cut(s)	67, 196, 297, 318, 378, 442, 520, 532
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	8 cut(s)	68, 197, 298, 319, 379, 443, 521, 533
Bme1390I	CCNGG	3 cut(s)	32, 230, 382
Bme18I	GGWCC	2 cut(s)	97, 226
BmgT120I	GGNCC	7 cut(s)	97, 205, 206, 226, 384, 416, 425
BmiI	GGNNCC	3 cut(s)	99, 161, 207
BmrFI	CCNGG	3 cut(s)	32, 230, 382
BmsI	GCATC	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	2 cut(s)	251, 377
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	90, 381
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 332, 362
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 53, 54, 156
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	230, 382
BseDI	CCNNGG	2 cut(s)	90, 381
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	4 cut(s)	31, 53, 54, 156
BseMII	CTCAG	2 cut(s)	34, 124
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	227, 280
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	304, 518
BseYI	CCCAGC	2 cut(s)	173, 181
BsgI	GTGCAG	1 cut(s)	67
BshFI	GGCC	5 cut(s)	207, 377, 386, 417, 426
BshNI	GGYRCC	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	237, 254
BsiSI	CCGG	4 cut(s)	32, 157, 336, 414
BslFI	GGGAC	2 cut(s)	83, 479
BslI	CCNNNNNNNGG	4 cut(s)	31, 53, 54, 156
BsmFI	GGGAC	2 cut(s)	83, 479
BsnI	GGCC	5 cut(s)	207, 377, 386, 417, 426
Bsp120I	GGGCCC	1 cut(s)	205
Bsp1286I	GDGCHC	3 cut(s)	209, 237, 254
Bsp1720I	GCTNAGC	1 cut(s)	110
BspANI	GGCC	5 cut(s)	207, 377, 386, 417, 426
BspCNI	CTCAG	2 cut(s)	33, 123
BspLI	GGNNCC	3 cut(s)	99, 161, 207
BspMI	ACCTGC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	90, 381
BssNI	GRCGYC	1 cut(s)	160
Bst2UI	CCWGG	2 cut(s)	230, 382
Bst4CI	ACNGT	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	116, 375
BstDEI	CTNAG	2 cut(s)	20, 110
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	8 cut(s)	115, 174, 204, 323, 383, 423, 447, 528
BstNI	CCWGG	2 cut(s)	230, 382
BstSCI	CCNGG	3 cut(s)	30, 228, 380
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	304, 518
BsuRI	GGCC	5 cut(s)	207, 377, 386, 417, 426
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	2 cut(s)	41, 484
BtsIMutI	CAGTG	2 cut(s)	41, 484
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	116, 375
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	7 cut(s)	97, 205, 206, 226, 384, 416, 425
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	400
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	20, 110
DinI	GGCGCC	1 cut(s)	161
EciI	GGCGGA	5 cut(s)	112, 283, 313, 428, 506
Ecl136II	GAGCTC	2 cut(s)	235, 252
Eco24I	GRGCYC	3 cut(s)	209, 237, 254
Eco47I	GGWCC	2 cut(s)	97, 226
Eco53kI	GAGCTC	2 cut(s)	235, 252
EcoICRI	GAGCTC	2 cut(s)	235, 252
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	228, 380
EcoT38I	GRGCYC	3 cut(s)	209, 237, 254
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
FaeI	CATG	1 cut(s)	403
FaiI	YATR	1 cut(s)	401
FaqI	GGGAC	2 cut(s)	83, 479
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	8 cut(s)	67, 196, 297, 318, 378, 442, 520, 532
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	3 cut(s)	209, 237, 254
Fsp4HI	GCNGC	8 cut(s)	67, 196, 297, 318, 378, 442, 520, 532
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	8 cut(s)	67, 196, 297, 318, 378, 442, 520, 532
GsaI	CCCAGC	2 cut(s)	177, 185
GsuI	CTGGAG	2 cut(s)	251, 377
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	5 cut(s)	207, 377, 386, 417, 426
HapII	CCGG	4 cut(s)	32, 157, 336, 414
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	8, 540
HpaII	CCGG	4 cut(s)	32, 157, 336, 414
HphI	GGTGA	1 cut(s)	472
Hpy188I	TCNGA	1 cut(s)	539
Hpy188III	TCNNGA	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	2 cut(s)	253, 508
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	84, 534
HpyF10VI	GCNNNNNNNGC	8 cut(s)	115, 174, 204, 323, 383, 423, 447, 528
HpyF3I	CTNAG	2 cut(s)	20, 110
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	160
KasI	GGCGCC	1 cut(s)	159
LmnI	GCTCC	5 cut(s)	159, 232, 240, 257, 288
Lsp1109I	GCAGC	2 cut(s)	304, 518
LweI	GCATC	1 cut(s)	543
MboII	GAAGA	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	209, 237, 254
MluCI	AATT	1 cut(s)	304
Mly113I	GGCGCC	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	534
MmeI	TCCRAC	1 cut(s)	244
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	317, 531
MspI	CCGG	4 cut(s)	32, 157, 336, 414
MspR9I	CCNGG	3 cut(s)	32, 230, 382
MvaI	CCWGG	2 cut(s)	230, 382
MwoI	GCNNNNNNNGC	8 cut(s)	115, 174, 204, 323, 383, 423, 447, 528
NarI	GGCGCC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	32
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	3 cut(s)	99, 161, 207
OliI	CACNNNNGTG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	8 cut(s)	68, 197, 298, 319, 379, 443, 521, 533
PleI	GAGTC	1 cut(s)	534
PluTI	GGCGCC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	534
Psp124BI	GAGCTC	2 cut(s)	237, 254
Psp6I	CCWGG	2 cut(s)	228, 380
PspFI	CCCAGC	2 cut(s)	173, 181
PspGI	CCWGG	2 cut(s)	228, 380
PspN4I	GGNNCC	3 cut(s)	99, 161, 207
PspOMI	GGGCCC	1 cut(s)	205
PspPI	GGNCC	7 cut(s)	97, 205, 206, 226, 384, 416, 425
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	2 cut(s)	237, 254
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	8 cut(s)	67, 196, 297, 318, 378, 442, 520, 532
Sau96I	GGNCC	7 cut(s)	97, 205, 206, 226, 384, 416, 425
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	3 cut(s)	32, 230, 382
SduI	GDGCHC	3 cut(s)	209, 237, 254
SfaNI	GCATC	1 cut(s)	543
SfiI	GGCCNNNNNGGCC	2 cut(s)	383, 423
SfoI	GGCGCC	1 cut(s)	161
SinI	GGWCC	2 cut(s)	97, 226
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	1 cut(s)	304
SspDI	GGCGCC	1 cut(s)	159
SstI	GAGCTC	2 cut(s)	237, 254
StyD4I	CCNGG	3 cut(s)	30, 228, 380
TaaI	ACNGT	1 cut(s)	16
TasI	AATT	1 cut(s)	304
TauI	GCSGC	6 cut(s)	69, 198, 299, 380, 444, 522
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	48, 491
TseI	GCWGC	2 cut(s)	317, 531
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	48, 491
VpaK11BI	GGWCC	2 cut(s)	97, 226
XapI	RAATTY	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.