Rroxscaffold_3G00226150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005359
Physical Location & Seq
Reverse (-)
9577189 .. 9577464
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226150.1

Sequence Viewer

Length: 276 bp
ATGGAGAAGAAGAAGCTGGAACAAGTAGAGAAGAAAAACAACGTCGTGAAGCCACGCCATTGGCCGCCGCCGCTCGACACGGAGTTGAGGGAGGAGCTCGAGTCATACACCTCCTTCAAGAACCTCCTCCCCTCCTCCTTCGCCGCCGTCCGGTCCCCGACGCCCAACTCCACCACCAACTCCGGCTATGAGATCTCCATCCCCAATCGTCTAGTTAATCGCCGTCTAGTCCTCGTTCGGCGAGATGGTGGTGAACTAGGGAATTGGAGTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.44

Weight (kDa)

9.69

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 73
AciI CCGC 4 cut(s) 65, 68, 71, 144
AcoI YGGCCR 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 2 cut(s) 16, 97
AluI AGCT 2 cut(s) 16, 97
Alw21I GWGCWC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 2 cut(s) 206, 239
BceAI ACGGC 2 cut(s) 131, 207
BfaI CTAG 3 cut(s) 212, 227, 257
BglII AGATCT 1 cut(s) 192
BisI GCNGC 4 cut(s) 65, 68, 71, 144
BlsI GCNGC 4 cut(s) 66, 69, 72, 145
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 197
BseGI GGATG 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 150
BseRI GAGGAG 3 cut(s) 107, 116, 124
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 151, 183
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 4 cut(s) 65, 68, 71, 144
BspANI GGCC 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 73
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 60
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 1 cut(s) 169
CviJI RGCY 5 cut(s) 16, 52, 64, 97, 186
CviKI_1 RGCY 5 cut(s) 16, 52, 64, 97, 186
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 99
FaiI YATR 2 cut(s) 106, 189
FaqI GGGAC 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 65, 68, 71, 144
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 65, 68, 71, 144
FspBI CTAG 3 cut(s) 212, 227, 257
GluI GCNGC 4 cut(s) 65, 68, 71, 144
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 151, 183
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 161
HinfI GANTC 2 cut(s) 101, 268
HpaII CCGG 2 cut(s) 151, 183
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 254
Hpy188III TCNNGA 2 cut(s) 46, 118
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 2 cut(s) 47, 163
HpyAV CCTTC 2 cut(s) 124, 148
HpyCH4IV ACGT 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 2, 164, 196
MaeI CTAG 3 cut(s) 212, 227, 257
MaeII ACGT 1 cut(s) 42
MalI GATC 1 cut(s) 194
MbiI CCGCTC 1 cut(s) 73
MboI GATC 1 cut(s) 192
MboII GAAGA 3 cut(s) 19, 22, 43
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 8 cut(s) 81, 85, 121, 134, 137, 142, 145, 242
MseI TTAA 1 cut(s) 216
MspI CCGG 2 cut(s) 151, 183
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 98
PkrI GCNGC 4 cut(s) 66, 69, 72, 145
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 155
PspPI GGNCC 1 cut(s) 153
PspXI VCTCGAGB 1 cut(s) 98
PsuI RGATCY 1 cut(s) 192
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 4 cut(s) 65, 68, 71, 144
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 99
SetI ASST 5 cut(s) 18, 45, 99, 113, 126
Sfr274I CTCGAG 1 cut(s) 98
SinI GGWCC 1 cut(s) 153
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 1 cut(s) 262
SsiI CCGC 4 cut(s) 65, 68, 71, 144
SspMI CTAG 3 cut(s) 212, 227, 257
SstI GAGCTC 1 cut(s) 99
TaiI ACGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 75, 99
TasI AATT 1 cut(s) 262
TauI GCSGC 4 cut(s) 67, 70, 73, 146
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspGWI ACGGA 2 cut(s) 95, 261
VpaK11BI GGWCC 1 cut(s) 153
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 3 cut(s) 212, 227, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.